PTPRC

General Information

Gene Name       : PTPRC
Gene ID             : ENSG00000081237.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTPRC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTPRCENSG00000081237.19102.79106.24104.52ENCSR000AEF
HepG2PTPRCENSG00000081237.190.000.000.00ENCSR985KAT
K562PTPRCENSG00000081237.1953.0757.9455.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTPRC is not avaliable on ENCORE database.



Proteins bound to RNA
  • PTPRC RNA is bound by 15 proteins.  







eCLIP assay for PTPRC is not avaliable on ENCORE database.





15 proteins are bound to PTPRC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1198726053198726107+3'-UTR5.470039.07598K562PUM2
chr1198725572198725626+3'-UTR3.631973.57062K562IGF2BP1
chr1198725564198725641+3'-UTR5.6688735.57843K562TARDBP
chr1198725567198725633+3'-UTR3.455404.77875HepG2SUB1
chr1198725461198725525+3'-UTR4.0753813.18661K562PUM2
chr1198663908198663953+3'-UTR,intron-Distal4.095584.57279K562PTBP1
chr1198725754198725809+3'-UTR5.6847915.30625K562PUM2
chr1198725049198725099+CDS3.059404.14618K562ZNF622
chr1198721845198721900+CDS4.660224.77252K562ZNF622
chr1198701428198701468+CDS,intron-Proximal4.406203.02572K562SND1
chr1198687263198687387+CDS3.689724.22960K562SND1
chr1198697468198697555+CDS,intron-Proximal3.543634.50206K562SND1
chr1198672426198672502+CDS,intron-Proximal3.595735.37252K562YBX3
chr1198704255198704362+CDS,intron-Proximal3.850855.57819K562UCHL5
chr1198700829198700897+CDS,intron-Proximal4.288114.21433K562PRPF8
chr1198682072198682133+CDS,intron-Proximal4.302495.29744K562U2AF2
chr1198687422198687481+CDS,intron-Proximal4.7300110.02061K562PRPF8
chr1198721441198721500+CDS4.078768.68374K562YBX3
chr1198711000198711087+CDS3.552063.95937K562UCHL5
chr1198698250198698358+CDS,intron-Proximal4.284594.98250K562AQR
chr1198704255198704342+CDS,intron-Proximal3.475843.66187K562ZNF622
chr1198721736198721809+CDS3.796515.32768K562YBX3
chr1198703461198703541+CDS4.104685.38431K562LIN28B
chr1198673599198673627+CDS,intron-Proximal3.200733.57974K562IGF2BP1
chr1198682100198682159+CDS3.532443.07411K562LIN28B
chr1198700429198700496+intron-Distal3.775063.25538K562KHSRP
chr1198612072198612117+intron-Distal4.685563.91475K562PTBP1
chr1198611504198611583+intron-Distal4.073035.63677K562PTBP1
chr1198698120198698189+intron-Distal,intron-Proximal4.600603.42734K562PTBP1
chr1198664347198664428+intron-Distal4.330325.47669K562PTBP1
chr1198643974198644109+intron-Distal5.256107.15244K562QKI
chr1198611618198611683+intron-Distal4.201426.59655K562PTBP1
chr1198679807198679880+intron-Distal3.830573.71397K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PTPRC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTPRC is not available on ENCORE database.

  • 85 RBPs can affect the levels of PTPRC.  








The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.





85 RBPs can affect the gene expression of PTPRC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTPRCENSG00000081237.143473.676004752.37170-0.452205.698204.16340K562AKAP8
PTPRCENSG00000081237.142975.444204500.30970-0.596909.406808.12000K562AKAP8L
PTPRCENSG00000081237.143588.543304298.42790-0.260402.551001.36150K562APOBEC3C
PTPRCENSG00000081237.141969.781003381.52260-0.7796014.1801012.99600K562AQR
PTPRCENSG00000081237.141776.950102241.38150-0.335004.931702.15120K562ASCC1
PTPRCENSG00000081237.143939.358904721.84670-0.261403.338602.32700K562ATP5C1
PTPRCENSG00000081237.141393.364202726.76840-0.9686032.1686028.63830K562BCCIP
PTPRCENSG00000081237.142235.727902634.85810-0.237002.999402.00170K562BCLAF1
PTPRCENSG00000081237.141053.154001755.03350-0.736809.675207.99480K562BOP1
PTPRCENSG00000081237.14662.077401067.98340-0.689807.748105.74830K562CCAR1
PTPRCENSG00000081237.143724.919805168.69920-0.472608.058406.03440K562CCDC124
PTPRCENSG00000081237.142385.342401616.492200.561204.644902.65760K562CEBPZ
PTPRCENSG00000081237.141868.617403496.76000-0.9040018.2898015.59560K562CIRBP
PTPRCENSG00000081237.143760.119603247.790800.211202.740001.63980K562CPEB4
PTPRCENSG00000081237.147841.650505989.813100.388506.186904.73770K562CELF1
PTPRCENSG00000081237.142375.512001858.052200.354304.279702.75350K562DDX21
PTPRCENSG00000081237.141592.846802310.58450-0.536707.954705.72010K562DDX27
PTPRCENSG00000081237.141467.774702324.18040-0.6631011.259509.00010K562DDX3X
PTPRCENSG00000081237.142458.063703360.61940-0.451208.049607.01570K562DDX47
PTPRCENSG00000081237.141322.240102257.35110-0.771607.681505.59250K562EEF2
PTPRCENSG00000081237.141991.370202552.93810-0.358405.759703.98390K562EIF2S1
PTPRCENSG00000081237.143382.921402791.654800.277002.522301.82960K562EIF2S2
PTPRCENSG00000081237.14590.359801086.32130-0.879806.554604.95240K562EIF3A
PTPRCENSG00000081237.141102.748702335.27990-1.0825016.1367013.47440K562EIF3D
PTPRCENSG00000081237.141395.576302292.39360-0.7160015.9015013.93510K562EIF3G
PTPRCENSG00000081237.142991.207804061.23040-0.441204.406901.91780K562EIF3H
PTPRCENSG00000081237.141572.340502428.20470-0.627009.112907.62240K562EIF4A3
PTPRCENSG00000081237.141813.911502186.73950-0.269702.776401.62050K562EIF4B
PTPRCENSG00000081237.142923.904504871.40370-0.7364024.2163021.69290K562EIF4G2
PTPRCENSG00000081237.141846.714201462.133600.336803.223001.84210K562EXOSC5
PTPRCENSG00000081237.141076.850202334.58360-1.1163024.3563021.53600K562FIP1L1
PTPRCENSG00000081237.141115.477701609.32760-0.528803.657002.59170K562FTO
PTPRCENSG00000081237.141824.330702525.23240-0.469008.533407.54190K562FXR1
PTPRCENSG00000081237.144159.928802636.657100.657706.192705.04230K562G3BP2
PTPRCENSG00000081237.142510.961903720.51100-0.567304.988703.97520K562GRSF1
PTPRCENSG00000081237.143948.927702730.737600.532103.417701.64960K562HNRNPAB
PTPRCENSG00000081237.14763.409702165.46460-1.5041046.1022043.78360K562HNRNPC
PTPRCENSG00000081237.141192.512201933.81740-0.6974010.954308.67180K562HNRNPF
PTPRCENSG00000081237.144761.454803258.722900.547004.433302.83820K562HNRNPK
PTPRCENSG00000081237.144043.861503037.098400.412905.306003.78890K562HNRNPL
PTPRCENSG00000081237.141196.419001920.26720-0.682607.449905.80410K562HNRNPM
PTPRCENSG00000081237.142790.519203491.77430-0.323404.457603.31560K562HNRNPU
PTPRCENSG00000081237.144036.039503165.145200.350603.364602.48850K562HSPD1
PTPRCENSG00000081237.142145.419103262.02450-0.604505.941504.19690K562IGF2BP2
PTPRCENSG00000081237.141437.190301078.293800.414403.099801.52610K562KHDRBS1
PTPRCENSG00000081237.142366.169703299.23070-0.479604.403601.97510K562KHSRP
PTPRCENSG00000081237.141102.419301521.32190-0.464702.983202.00920K562KRR1
PTPRCENSG00000081237.142920.073702097.137000.477505.710403.60590K562LARP7
PTPRCENSG00000081237.141284.199602196.39060-0.7743010.848607.86550K562LIN28B
PTPRCENSG00000081237.142244.641403428.87100-0.611209.953208.29320K562MAGOH
PTPRCENSG00000081237.141942.952203422.00790-0.8166018.0643015.64970K562MATR3
PTPRCENSG00000081237.146310.665905350.385900.238002.120801.34100K562MBNL1
PTPRCENSG00000081237.141634.510902417.79640-0.5648013.7660012.13420K562MTPAP
PTPRCENSG00000081237.141911.790002802.96110-0.552003.554502.13760K562PABPC1
PTPRCENSG00000081237.14858.546201859.83060-1.1152018.6008016.52230K562PCBP3
PTPRCENSG00000081237.14630.637801426.58010-1.1777027.5774025.27880K562POLR2G
PTPRCENSG00000081237.141381.598102122.42150-0.619407.537206.29720K562PRPF8
PTPRCENSG00000081237.141813.058103331.31720-0.8777021.2245019.45670K562PTBP1
PTPRCENSG00000081237.144217.694805315.06150-0.333603.628502.69680K562PUF60
PTPRCENSG00000081237.142825.201004463.30540-0.6598010.062409.07260K562PUS1
PTPRCENSG00000081237.142700.295304348.62560-0.6874017.9179016.38030K562RBM15
PTPRCENSG00000081237.145971.454003527.584000.7593010.658007.65360K562RBM17
PTPRCENSG00000081237.142477.795403194.66950-0.366603.594202.62590K562RBM22
PTPRCENSG00000081237.143678.089202501.806800.555909.182706.61240K562RBM25
PTPRCENSG00000081237.141149.191801771.51460-0.624409.475507.62080K562RCC2
PTPRCENSG00000081237.141375.266302161.94380-0.652606.453605.19510K562RPS19
PTPRCENSG00000081237.141154.874702533.72810-1.1335022.1378019.20740K562RPS3
PTPRCENSG00000081237.141158.858601816.20450-0.648204.492502.47550K562SERBP1
PTPRCENSG00000081237.142045.288902650.79850-0.374105.704204.56490K562SF3A3
PTPRCENSG00000081237.141034.506701694.42700-0.711907.602805.94210K562SF3B1
PTPRCENSG00000081237.141982.825102742.53540-0.468006.924705.53420K562SF3B4
PTPRCENSG00000081237.141512.530102903.74550-0.941005.341103.28550K562SFPQ
PTPRCENSG00000081237.144288.015102734.909300.648702.823201.58210K562SNRNP200
PTPRCENSG00000081237.141227.819801679.34090-0.451804.584303.17260K562SRFBP1
PTPRCENSG00000081237.142761.786703265.73290-0.241802.126401.49750K562SRSF1
PTPRCENSG00000081237.143686.387702364.639800.640504.220302.59290K562SSB
PTPRCENSG00000081237.145598.506004637.440300.271603.456501.77350K562SUCLG1
PTPRCENSG00000081237.141038.056002054.99610-0.9853014.6013012.26830K562SUPV3L1
PTPRCENSG00000081237.14981.071901430.86030-0.544505.097803.97520K562SYNCRIP
PTPRCENSG00000081237.141350.625103305.28270-1.2911031.5136028.54700K562TARDBP
PTPRCENSG00000081237.142268.530203188.27950-0.491006.288904.97980K562TIA1
PTPRCENSG00000081237.141874.214202640.25690-0.494407.606406.27070K562U2AF2
PTPRCENSG00000081237.143210.605002848.399600.172602.063101.43680K562UPF1
PTPRCENSG00000081237.144136.145103347.002600.305303.151001.34210K562UPF2
PTPRCENSG00000081237.145018.958304006.651300.324903.514602.05050K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.





16 RBPs can affect the splicing of PTPRC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPTPRCENSG00000081237.14chr1+1986686921986688331986614751986615021986724261986725010.282000.000000.00000includedK562SRSF1
SEPTPRCENSG00000081237.14chr1+1986686921986688331986614751986615021986724261986725010.184000.000220.05284includedK562WDR3
SEPTPRCENSG00000081237.14chr1+198678815198678953198677261198677390198682081198682201-0.070000.000000.00042excludedK562AKAP8L
SEPTPRCENSG00000081237.14chr1+1986715151986716591986686921986688331986724261986725010.396000.000000.00001includedK562AQR
SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.240000.000000.00002excludedK562ABCF1
SEPTPRCENSG00000081237.14chr1+1986686921986688331986614751986615021986724261986725010.176000.000630.02698includedK562FXR1
SEPTPRCENSG00000081237.14chr1+198678815198678953198677261198677390198682081198682201-0.086000.000000.00002excludedK562PUS1
SEPTPRCENSG00000081237.14chr1+1986715151986716591986686921986688331986724261986725010.121000.000190.03704includedK562NSUN2
SEPTPRCENSG00000081237.14chr1+1986715151986716591986686921986688331986724261986725010.160000.000060.00761includedK562HNRNPL
SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.175000.000000.00000excludedK562HNRNPL
SEPTPRCENSG00000081237.14chr1+1986715151986716591986614751986615021986724261986725010.189000.000000.00156includedK562SBDS
SEPTPRCENSG00000081237.14chr1+1986715151986716591986686921986688331986724261986725010.107000.000420.06953includedK562UPF1
SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.076000.003900.05952excludedK562U2AF2
SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.082000.003450.09561excludedK562HNRNPU
SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.106000.000450.01471excludedK562RBM15
SEPTPRCENSG00000081237.14chr1+198678815198678953198677261198677390198682081198682201-0.087000.000000.00009excludedK562RBM15
SEPTPRCENSG00000081237.14chr1+1986715151986716591986686921986688331986724261986725010.709000.000000.00000includedK562CPSF6
SEPTPRCENSG00000081237.14chr1+1986686921986688331986614751986615021986724261986725010.277000.000000.00253includedK562EIF3G
MXEPTPRCENSG00000081237.14chr1+198668692198668833198671515198671659198661475198661502198672426198672501-0.212000.000020.005302includedK562HNRNPL
MXEPTPRCENSG00000081237.14chr1+198668692198668833198671515198671659198661475198661502198672426198672501-0.152000.005900.096992includedK562SBDS
MXEPTPRCENSG00000081237.14chr1+198668692198668833198671515198671659198661475198661502198672426198672501-0.611000.000000.000002includedK562CPSF6
MXEPTPRCENSG00000081237.14chr1+198668692198668833198671515198671659198665840198666038198672426198672501-0.379000.000000.000002includedK562CPSF6
MXEPTPRCENSG00000081237.14chr1+198663146198663269198665840198666038198661475198661502198668692198668833-0.183000.000000.001092includedK562CPSF6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTPRC is not avaliable on ENCORE database.