OPN3

General Information

Gene Name       : OPN3
Gene ID             : ENSG00000054277.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OPN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OPN3ENSG00000054277.139.566.317.94ENCSR000AEF
HepG2OPN3ENSG00000054277.1316.7222.4619.59ENCSR985KAT
K562OPN3ENSG00000054277.1313.0714.8713.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OPN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OPN3 RNA is bound by 22 proteins.  







eCLIP assay for OPN3 is not avaliable on ENCORE database.





22 proteins are bound to OPN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1241757582241757663-3'-UTR,intron-Distal4.400415.86108K562YBX3
chr1241803506241803626-5'-UTR,CDS,intron-Distal,intron-Proximal4.3899312.63857K562DDX3X
chr1241803546241803615-5'-UTR,CDS,intron-Distal,intron-Proximal5.341788.17272HepG2DDX3X
chr1241803367241803409-CDS,intron-Distal3.936754.82666HepG2DDX3X
chr1241803357241803431-CDS,intron-Distal5.045438.02646K562FMR1
chr1241803297241803454-CDS,intron-Distal3.3325715.81942K562DDX3X
chr1241803203241803257-CDS,intron-Distal4.823976.05264HepG2DDX3X
chr1241803437241803546-CDS,intron-Distal,intron-Proximal4.2048018.70677HepG2DDX3X
chr1241803214241803297-CDS,intron-Distal3.117288.65111K562DDX3X
chr1241803134241803197-CDS,intron-Distal3.248075.28657K562RBM15
chr1241803183241803279-CDS,intron-Distal3.851353.45590K562GRWD1
chr1241792582241792655-3'-UTR,intron-Distal3.617054.64200K562KHDRBS1
chr1241795994241796042-3'-UTR,intron-Distal4.7842226.30856K562LIN28B
chr1241794149241794209-3'-UTR,intron-Distal3.877543.81856K562IGF2BP1
chr1241796564241796627-3'-UTR,intron-Distal4.689245.73330K562KHDRBS1
chr1241795219241795275-3'-UTR,intron-Distal3.815897.50442K562UPF1
chr1241795075241795123-3'-UTR,intron-Distal3.018333.51543K562PPIL4
chr1241793496241793527-3'-UTR,intron-Distal4.066543.05019K562PPIL4
chr1241798851241798929-CDS,intron-Distal4.3920614.37547K562RBM15
chr1241797958241798072-CDS,intron-Distal5.000466.30939K562IGF2BP1
chr1241797620241797655-CDS,intron-Distal3.179783.08145HepG2HLTF
chr1241796669241796762-3'-UTR,intron-Distal3.830565.86270K562TIA1
chr1241797691241797789-CDS,intron-Distal3.679896.23530K562FXR1
chr1241802938241803038-intron-Distal3.309246.31999HepG2PCBP2
chr1241797857241797913-CDS,intron-Distal3.837595.13030K562RBM15
chr1241793715241793851-3'-UTR,intron-Distal4.6585439.26136K562QKI
chr1241793409241793509-3'-UTR,intron-Distal4.359509.23779K562IGF2BP1
chr1241795968241796023-3'-UTR,intron-Distal3.522154.84058HepG2LIN28B
chr1241802938241803020-intron-Distal3.620574.34707HepG2HNRNPK
chr1241795764241795821-3'-UTR,intron-Distal3.946175.70424K562IGF2BP1
chr1241770793241770864-intron-Distal5.296766.90462K562PTBP1
chr1241797010241797049-3'-UTR,intron-Distal3.815043.01429K562IGF2BP1
chr1241802891241803009-intron-Distal3.278435.80500K562HNRNPK
chr1241793193241793233-3'-UTR,intron-Distal4.360364.88815K562KHDRBS1
chr1241794011241794098-3'-UTR,intron-Distal3.627518.20012K562IGF2BP1
chr1241797345241797409-CDS,intron-Distal5.3002310.55688K562LIN28B
chr1241796983241797049-3'-UTR,intron-Distal4.256603.71570HepG2BCLAF1
chr1241798662241798694-CDS,intron-Distal3.776755.36986K562RBM15
chr1241799414241799497-intron-Distal3.891876.59733K562KHSRP
chr1241795140241795207-3'-UTR,intron-Distal4.2285012.96831K562QKI
chr1241794209241794268-3'-UTR,intron-Distal4.949405.29045K562IGF2BP1
chr1241795960241795994-3'-UTR,intron-Distal4.9895326.98263K562LIN28B
chr1241797584241797661-CDS,intron-Distal4.275613.87091K562IGF2BP2
chr1241794986241795049-3'-UTR,intron-Distal3.714913.43509K562HNRNPU
chr1241797340241797375-CDS,intron-Distal3.311544.77768K562SAFB
chr1241795878241795910-3'-UTR,intron-Distal4.369395.44167K562SAFB
chr1241770788241770866-intron-Distal4.507304.07628HepG2PTBP1
chr1241795134241795192-3'-UTR,intron-Distal3.106613.97172HepG2QKI
chr1241796978241797049-3'-UTR,intron-Distal3.033686.56833K562PPIL4
chr1241793722241793851-3'-UTR,intron-Distal5.271388.94626HepG2QKI
chr1241796503241796545-3'-UTR,intron-Distal3.013683.02914K562KHDRBS1
chr1241798961241799021-CDS,intron-Distal3.556768.76447K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OPN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OPN3 is not available on ENCORE database.

  • 118 RBPs can affect the levels of OPN3.  








The Knockdown/knockout RNA-Seq assay for OPN3 is not available on ENCORE database.





118 RBPs can affect the gene expression of OPN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OPN3ENSG00000054277.8477.53250335.318300.510004.543003.80070HepG2ACO1
OPN3ENSG00000054277.8157.34220351.43880-1.1594010.245008.49200HepG2ADAR
OPN3ENSG00000054277.8235.66780336.90010-0.515603.452202.60670HepG2AKAP8L
OPN3ENSG00000054277.8186.46030302.42590-0.697703.005802.06700HepG2BCLAF1
OPN3ENSG00000054277.8563.40840430.921100.386702.672701.91380HepG2CALR
OPN3ENSG00000054277.8658.19510487.013300.434502.624501.87040HepG2CIRBP
OPN3ENSG00000054277.8412.05930636.87010-0.628103.264502.42800HepG2CNOT7
OPN3ENSG00000054277.8468.56630206.454501.1823012.2110010.88320HepG2CPSF6
OPN3ENSG00000054277.8319.84340215.021500.572803.589302.37950HepG2CSTF2
OPN3ENSG00000054277.8779.03350603.103700.369203.690302.85460HepG2DAZAP1
OPN3ENSG00000054277.8428.18890310.124900.465303.959102.98330HepG2DDX19B
OPN3ENSG00000054277.8517.62860347.379900.575304.163503.34760HepG2DDX21
OPN3ENSG00000054277.8487.32760339.863000.519803.595502.54570HepG2DDX24
OPN3ENSG00000054277.8369.51580593.43260-0.683405.148104.31860HepG2DDX3X
OPN3ENSG00000054277.8811.74050509.879000.670803.989103.25870HepG2DDX6
OPN3ENSG00000054277.8175.01430341.32030-0.963707.876706.30910HepG2DHX30
OPN3ENSG00000054277.8600.72270320.810700.9049010.374009.23220HepG2DKC1
OPN3ENSG00000054277.8246.80400359.38460-0.542202.594101.69890HepG2EEF2
OPN3ENSG00000054277.8274.95610541.51290-0.977808.550307.42900HepG2EIF4A3
OPN3ENSG00000054277.8712.03440527.337900.433102.015001.42220HepG2EIF4B
OPN3ENSG00000054277.8289.22140569.93560-0.978607.632606.30890HepG2EIF4G2
OPN3ENSG00000054277.8536.28960327.672700.710704.887703.78190HepG2EWSR1
OPN3ENSG00000054277.8165.62040356.39780-1.105606.994205.82870HepG2FIP1L1
OPN3ENSG00000054277.8364.17810506.89560-0.477002.639901.98910HepG2G3BP1
OPN3ENSG00000054277.8221.81840374.39450-0.755205.096403.70790HepG2GNB2L1
OPN3ENSG00000054277.8240.49100320.13760-0.412702.437001.51300HepG2HDGF
OPN3ENSG00000054277.81015.06330513.470600.9831013.3007011.87860HepG2HNRNPK
OPN3ENSG00000054277.8789.59990549.397200.523206.830805.81560HepG2HNRNPL
OPN3ENSG00000054277.8406.16840245.880500.724005.511504.21670HepG2HNRNPM
OPN3ENSG00000054277.8163.70730394.77320-1.2699017.0840015.67780HepG2HNRNPU
OPN3ENSG00000054277.8322.47840606.83430-0.912107.744805.66430HepG2KHDRBS1
OPN3ENSG00000054277.8149.09370518.27720-1.7975019.7895017.01190HepG2KHSRP
OPN3ENSG00000054277.8168.03500580.39730-1.7883013.9803012.15060HepG2LARP4
OPN3ENSG00000054277.8353.41860562.67560-0.670904.741003.92460HepG2NCBP2
OPN3ENSG00000054277.8734.16050598.033600.295801.964201.31860HepG2NOL12
OPN3ENSG00000054277.8136.58900493.38610-1.8529033.7512032.03560HepG2PCBP1
OPN3ENSG00000054277.8164.53950422.98820-1.3622011.476509.57890HepG2PCBP2
OPN3ENSG00000054277.8271.37720352.10660-0.375702.087101.43950HepG2PPIL4
OPN3ENSG00000054277.8149.39960229.51800-0.619403.557702.69030HepG2PRPF4
OPN3ENSG00000054277.8419.65330570.86080-0.443903.091602.46760HepG2PUF60
OPN3ENSG00000054277.8472.07190605.97680-0.360303.323702.68630HepG2PUM1
OPN3ENSG00000054277.8149.82900605.54480-2.0149039.8309037.56140HepG2PUM2
OPN3ENSG00000054277.8243.53030341.54450-0.488003.336602.67570HepG2PUS1
OPN3ENSG00000054277.8384.45660543.75460-0.500104.034503.29980HepG2QKI
OPN3ENSG00000054277.8503.65400361.256200.479303.545602.58620HepG2RBM15
OPN3ENSG00000054277.8868.14770482.075600.8486013.2024012.23820HepG2RBM22
OPN3ENSG00000054277.8129.64510493.46600-1.9284031.1088029.03900HepG2RBM25
OPN3ENSG00000054277.8244.28140400.95640-0.714903.714702.62120HepG2RPS10
OPN3ENSG00000054277.8132.44060283.87710-1.099908.526507.51780HepG2RPS19
OPN3ENSG00000054277.8321.57620639.50150-0.991808.414507.04430HepG2RPS3A
OPN3ENSG00000054277.8355.00430261.220800.442502.179601.47290HepG2RRP9
OPN3ENSG00000054277.8259.35800351.56450-0.438802.803802.15630HepG2SAFB2
OPN3ENSG00000054277.8416.79610602.20240-0.530903.003001.64090HepG2SART3
OPN3ENSG00000054277.8368.83900607.50880-0.719904.110502.23470HepG2SBDS
OPN3ENSG00000054277.8148.14660284.95200-0.943705.856304.50300HepG2SERBP1
OPN3ENSG00000054277.8430.80490221.077900.962408.390107.22410HepG2SF3B1
OPN3ENSG00000054277.873.57750234.67120-1.673303.429201.77240HepG2SFPQ
OPN3ENSG00000054277.8386.22280547.33140-0.503005.006104.10580HepG2SLBP
OPN3ENSG00000054277.8452.13710245.985900.878104.644103.62140HepG2SNRNP70
OPN3ENSG00000054277.81176.55340544.485401.1115030.0429028.84980HepG2SRFBP1
OPN3ENSG00000054277.8266.97440563.62140-1.0780016.6798015.32550HepG2SRSF5
OPN3ENSG00000054277.8938.10150472.740100.9886021.7257020.58630HepG2SSB
OPN3ENSG00000054277.8262.27960641.01030-1.2892025.7898024.20920HepG2SUCLG1
OPN3ENSG00000054277.8656.88500340.617300.947409.006207.90040HepG2SUPV3L1
OPN3ENSG00000054277.8131.57890383.60580-1.5437020.0647018.94410HepG2TIAL1
OPN3ENSG00000054277.8264.77620557.67890-1.0747013.1106011.01040HepG2TUFM
OPN3ENSG00000054277.8180.85680304.85830-0.753304.250503.48050HepG2U2AF1
OPN3ENSG00000054277.8367.97290590.27600-0.681803.830102.83910HepG2UBE2L3
OPN3ENSG00000054277.8430.56520254.338100.759407.401605.78010HepG2UTP18
OPN3ENSG00000054277.8484.30040272.135800.8315010.819209.91440HepG2ZNF622
OPN3ENSG00000054277.8624.91080424.229200.558705.391903.44150K562BCCIP
OPN3ENSG00000054277.8313.81310409.97550-0.385602.514701.60190K562BCLAF1
OPN3ENSG00000054277.8299.49680481.16310-0.684004.659702.75550K562BUD13
OPN3ENSG00000054277.8336.47730486.51400-0.532003.628702.14940K562CIRBP
OPN3ENSG00000054277.8487.38360374.863800.378602.300201.57850K562CPSF6
OPN3ENSG00000054277.8517.747201028.18440-0.9898015.5664013.41040K562CELF1
OPN3ENSG00000054277.8343.63650592.24190-0.7853010.233909.07160K562DDX47
OPN3ENSG00000054277.8155.50150266.22150-0.775705.495403.41070K562DDX6
OPN3ENSG00000054277.8205.84360352.94780-0.777904.526302.85230K562EEF2
OPN3ENSG00000054277.8584.56500341.003300.777506.967005.46620K562EFTUD2
OPN3ENSG00000054277.8191.27190288.40240-0.592504.068502.58380K562EIF2S1
OPN3ENSG00000054277.8745.15230546.652400.446804.442003.55780K562EIF2S2
OPN3ENSG00000054277.895.37800200.87160-1.074504.040302.79850K562EIF3A
OPN3ENSG00000054277.8178.34360248.80330-0.480302.250701.52750K562EIF3G
OPN3ENSG00000054277.8381.26400274.328000.474802.669101.86400K562EIF4A3
OPN3ENSG00000054277.8156.82010247.03810-0.655604.037502.59430K562EIF4B
OPN3ENSG00000054277.8502.87500836.40710-0.734007.895306.32300K562EIF4G2
OPN3ENSG00000054277.8190.78400496.55650-1.3800017.1696014.86850K562FIP1L1
OPN3ENSG00000054277.8188.28140352.64290-0.905306.347704.51790K562FKBP4
OPN3ENSG00000054277.8143.40060219.96060-0.617202.959201.56710K562FUS
OPN3ENSG00000054277.8394.33720285.287900.466902.973702.34970K562FXR1
OPN3ENSG00000054277.8253.66430433.97240-0.774706.397804.12240K562G3BP1
OPN3ENSG00000054277.8315.69560444.86250-0.494803.654202.35150K562GLRX3
OPN3ENSG00000054277.8249.31050570.00710-1.1930016.8766014.52290K562HNRNPA1
OPN3ENSG00000054277.8272.28690406.13480-0.576803.658902.98500K562HNRNPC
OPN3ENSG00000054277.8252.91320362.69150-0.520102.929901.75380K562HNRNPF
OPN3ENSG00000054277.8802.01330453.439300.822608.530306.31610K562HNRNPK
OPN3ENSG00000054277.8708.83530408.418800.795307.078805.48100K562HNRNPM
OPN3ENSG00000054277.8379.82570631.24490-0.732908.709607.13500K562HNRNPU
OPN3ENSG00000054277.8435.98150673.23360-0.626805.388404.29390K562HSPD1
OPN3ENSG00000054277.8220.15380453.67970-1.043208.509606.33570K562IGF2BP2
OPN3ENSG00000054277.8310.40960461.56020-0.572304.265802.71220K562IGF2BP3
OPN3ENSG00000054277.8267.12640423.04990-0.663302.788001.36220K562ILF2
OPN3ENSG00000054277.8127.52860206.32690-0.694103.113301.52400K562ILF3
OPN3ENSG00000054277.8120.07620199.38330-0.731603.399801.74880K562KHDRBS1
OPN3ENSG00000054277.8228.03310459.13660-1.009708.550505.52030K562KHSRP
OPN3ENSG00000054277.8273.80970393.32680-0.522603.068401.59180K562LARP7
OPN3ENSG00000054277.8297.47510476.13520-0.678603.807102.71050K562MATR3
OPN3ENSG00000054277.8559.43510358.178100.643206.016504.57750K562MBNL1
OPN3ENSG00000054277.8235.10320349.36070-0.571403.338902.37530K562METAP2
OPN3ENSG00000054277.8668.72430891.56590-0.414902.688901.57680K562MSI2
OPN3ENSG00000054277.8366.20800519.68490-0.505004.906403.95260K562NSUN2
OPN3ENSG00000054277.8262.42800399.89790-0.607703.692801.95720K562NUSAP1
OPN3ENSG00000054277.8300.95330466.20340-0.631405.047303.16120K562PCBP1
OPN3ENSG00000054277.8650.13780355.206600.872007.891906.48620K562PCBP3
OPN3ENSG00000054277.8505.06190272.454900.890309.697608.23610K562POLR2G
OPN3ENSG00000054277.8529.18540331.836100.673204.836403.84760K562PRPF8
OPN3ENSG00000054277.8266.15250364.14590-0.452302.497001.64350K562PSIP1
OPN3ENSG00000054277.81357.32520912.614800.572606.656705.38920K562PUF60
OPN3ENSG00000054277.8631.12900970.48540-0.620804.014802.70720K562PUM1
OPN3ENSG00000054277.8207.60400298.76870-0.525202.458701.93980K562PUS1
OPN3ENSG00000054277.8349.74930210.379200.733203.272901.71010K562RAVER1
OPN3ENSG00000054277.8938.56260690.780100.442103.849901.94590K562RBM17
OPN3ENSG00000054277.8306.84690444.56290-0.534903.444002.50050K562RBM22
OPN3ENSG00000054277.891.80070209.20910-1.188407.599305.27200K562RBM25
OPN3ENSG00000054277.8208.86750332.25280-0.669704.361503.11570K562RCC2
OPN3ENSG00000054277.863.35680242.76600-1.9380016.9166014.52370K562SAFB
OPN3ENSG00000054277.8699.22050206.284101.761005.184603.37520K562SF1
OPN3ENSG00000054277.8468.52930229.338301.0306012.6400010.72300K562SF3B4
OPN3ENSG00000054277.8237.49580454.33230-0.935806.771905.67650K562SRSF1
OPN3ENSG00000054277.8214.53620429.00940-0.999808.826406.84970K562SRSF5
OPN3ENSG00000054277.8422.40800796.28150-0.914607.400705.13860K562SUCLG1
OPN3ENSG00000054277.8123.40810216.43070-0.810502.928901.40890K562TAF15
OPN3ENSG00000054277.8680.72020459.877600.565704.584103.66830K562TARDBP
OPN3ENSG00000054277.8178.65160292.86650-0.713103.948601.94660K562TFIP11
OPN3ENSG00000054277.8294.12080443.58720-0.592803.982802.97540K562TIA1
OPN3ENSG00000054277.8231.81250350.24540-0.595403.198902.18750K562TIAL1
OPN3ENSG00000054277.8280.10210435.14010-0.635504.307802.89570K562TRA2A
OPN3ENSG00000054277.8266.57920372.10930-0.481202.570701.66520K562TRIM56
OPN3ENSG00000054277.8366.69780543.88970-0.568705.536703.71840K562TROVE2
OPN3ENSG00000054277.8329.54890220.784100.577803.749802.81320K562U2AF2
OPN3ENSG00000054277.8445.95870551.03180-0.305202.143701.50530K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OPN3 is not available on ENCORE database.





3 RBPs can affect the splicing of OPN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEOPN3ENSG00000054277.8chr1-241767561241767881241761047241761299241803183241803663-0.255000.003500.09399excludedK562PRPF8
SEOPN3ENSG00000054277.8chr1-2417675612417678812417610472417612992418031832418036630.271000.000240.01397includedHepG2MATR3
SEOPN3ENSG00000054277.8chr1-2417675612417678812417610472417612992418031832418036630.244000.000500.03868includedK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for OPN3 is not avaliable on ENCORE database.