ASB3

General Information

Gene Name : ASB3
Gene ID : ENSG00000115239.21
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ASB3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ASB3	ENSG00000115239.21	14.10	11.67	12.88	ENCSR000AEF
HepG2	ASB3	ENSG00000115239.21	14.88	22.55	18.71	ENCSR985KAT
K562	ASB3	ENSG00000115239.21	10.50	12.61	11.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ASB3 is not avaliable on ENCORE database.

Proteins bound to RNA

ASB3 RNA is bound by 27 proteins.

eCLIP assay for ASB3 is not avaliable on ENCORE database.

27 proteins are bound to ASB3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	53897373	53897551	-	3'-UTR,intron-Distal,intron-Proximal	3.64624	4.94579	K562	ZC3H11A
chr2	54087166	54087231	-	5'-UTR,intron-Distal,intron-Proximal	4.40648	4.38582	HepG2	XRN2
chr2	53977921	53978052	-	CDS,intron-Distal,intron-Proximal	3.83647	9.81646	HepG2	GRWD1
chr2	53956592	53956702	-	CDS,intron-Distal,intron-Proximal	3.49449	4.88141	HepG2	GRWD1
chr2	53943807	53943881	-	CDS,intron-Distal,intron-Proximal	3.93053	3.79347	HepG2	GRWD1
chr2	53956632	53956701	-	CDS,intron-Distal	3.27650	6.19339	HepG2	BCLAF1
chr2	53943849	53943880	-	CDS,intron-Distal	3.91655	5.35703	HepG2	BCLAF1
chr2	53943705	53943743	-	CDS,intron-Distal	4.11184	3.45943	HepG2	BCLAF1
chr2	53927574	53927673	-	CDS,intron-Distal,intron-Proximal	3.15230	4.23325	HepG2	BCLAF1
chr2	53927610	53927679	-	CDS,intron-Distal,intron-Proximal	5.14642	9.25476	K562	BUD13
chr2	53956562	53956625	-	CDS,intron-Distal,intron-Proximal	3.62737	5.43815	HepG2	PRPF8
chr2	53927641	53927679	-	CDS,intron-Distal,intron-Proximal	5.17913	5.47221	K562	GPKOW
chr2	53992558	53992620	-	CDS,intron-Distal	3.90053	3.32022	K562	UCHL5
chr2	53955848	53955855	-	CDS,intron-Distal,intron-Proximal	3.35982	3.57857	HepG2	BCLAF1
chr2	53921017	53921089	-	CDS,intron-Distal,intron-Proximal	3.37282	4.85828	HepG2	BCLAF1
chr2	53956545	53956611	-	CDS,intron-Distal,intron-Proximal	3.37839	3.18246	K562	PRPF8
chr2	53921020	53921100	-	CDS,intron-Distal,intron-Proximal	3.26347	4.25541	HepG2	GRWD1
chr2	53977883	53977925	-	CDS,intron-Distal,intron-Proximal	5.99845	7.02967	HepG2	PRPF8
chr2	53992527	53992620	-	CDS,intron-Distal	3.45945	7.24602	HepG2	GRWD1
chr2	53977925	53977979	-	CDS,intron-Distal,intron-Proximal	3.79458	7.26133	HepG2	PRPF8
chr2	53897245	53897347	-	3'-UTR,intron-Distal,intron-Proximal	4.15689	4.11076	HepG2	ZC3H11A
chr2	53983885	53984061	-	intron-Distal,intron-Proximal	3.13762	5.34532	HepG2	SRSF1
chr2	54085643	54085729	-	intron-Distal	4.28953	10.66089	HepG2	PTBP1
chr2	53941401	53941484	-	intron-Distal,intron-Proximal	4.66631	10.76443	K562	PRPF8
chr2	54081095	54081141	-	CDS,intron-Distal	4.11785	3.81597	K562	RBM15
chr2	53985108	53985185	-	intron-Distal	5.47201	15.55512	K562	PTBP1
chr2	53957468	53957632	-	intron-Distal	3.04616	4.72285	HepG2	HNRNPL
chr2	54081453	54081561	-	CDS,intron-Distal	5.32460	10.48467	K562	RBM15
chr2	54064504	54064589	-	intron-Distal	3.92993	3.58660	HepG2	ILF3
chr2	54082041	54082079	-	intron-Distal	4.27356	6.52138	HepG2	QKI
chr2	54084692	54084781	-	intron-Distal	3.93956	9.93837	HepG2	QKI
chr2	53989003	53989126	-	intron-Distal	4.24249	4.54401	K562	KHSRP
chr2	54082079	54082125	-	intron-Distal	6.10216	13.99567	HepG2	QKI
chr2	54081229	54081276	-	CDS,intron-Distal	4.14408	4.15208	K562	RBM15
chr2	53995402	53995477	-	intron-Distal,intron-Proximal	3.19792	3.40206	HepG2	HNRNPC
chr2	54013888	54014042	-	5'-UTR,intron-Distal,intron-Proximal	3.20742	4.81796	HepG2	NCBP2
chr2	53936323	53936398	-	intron-Distal	3.02597	3.00129	HepG2	SUGP2
chr2	54085625	54085722	-	intron-Distal	5.52959	9.44534	K562	PTBP1
chr2	53977108	53977184	-	intron-Distal	3.45001	5.32884	K562	KHSRP
chr2	54077199	54077264	-	intron-Distal	3.55290	5.47443	HepG2	PCBP2
chr2	54084768	54084830	-	intron-Distal	4.63242	5.14122	HepG2	PCBP2
chr2	53955576	53955672	-	intron-Distal	5.53393	11.15144	HepG2	QKI
chr2	54086511	54086596	-	intron-Distal	3.96390	11.33406	HepG2	HNRNPK
chr2	53977311	53977393	-	intron-Distal	5.30070	14.71518	HepG2	U2AF2
chr2	53939832	53939909	-	intron-Distal	4.43697	4.92524	K562	TARDBP
chr2	53941409	53941494	-	intron-Distal,intron-Proximal	3.41611	3.93669	K562	AQR
chr2	53979051	53979145	-	intron-Distal	3.92632	4.52298	HepG2	QKI
chr2	54000143	54000258	-	intron-Distal	3.21657	3.12625	HepG2	QKI
chr2	54085504	54085561	-	intron-Distal	4.21565	4.66266	K562	TARDBP
chr2	53949624	53949693	-	intron-Distal	4.65504	4.80399	K562	EXOSC5
chr2	54082002	54082148	-	intron-Distal	4.67546	7.90406	K562	QKI
chr2	53976875	53976924	-	intron-Distal	4.33975	11.61338	HepG2	U2AF2
chr2	53941427	53941485	-	intron-Distal,intron-Proximal	4.66468	5.55733	K562	BUD13
chr2	54081606	54081641	-	CDS,intron-Distal	4.13611	3.28989	K562	RBM15
chr2	53985100	53985195	-	intron-Distal	5.90907	36.93444	HepG2	PTBP1
chr2	53989258	53989302	-	intron-Distal	4.76264	6.92541	HepG2	HNRNPL
chr2	54081711	54081755	-	CDS,intron-Distal	4.22107	4.48994	K562	RBM15
chr2	54081834	54081919	-	3'-UTR,CDS,intron-Distal	3.92859	6.70275	K562	RBM15
chr2	53926892	53926962	-	intron-Distal	3.72565	3.77350	HepG2	CSTF2
chr2	54085632	54085697	-	intron-Distal	4.12098	3.96879	HepG2	MATR3
chr2	53976870	53976927	-	intron-Distal	4.00418	4.13361	HepG2	U2AF1
chr2	54082702	54082798	-	intron-Distal	3.40099	4.61945	HepG2	HNRNPK
chr2	53941447	53941502	-	intron-Distal,intron-Proximal	4.99784	3.78571	K562	GPKOW
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for ASB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ASB3 is not available on ENCORE database.
1 RBPs can affect the levels of ASB3.

The Knockdown/knockout RNA-Seq assay for ASB3 is not available on ENCORE database.

1 RBPs can affect the gene expression of ASB3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ASB3	ENSG00000270898.1	16.95450	0.00000	99999.99990	4.31530	3.67210	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ASB3 is not available on ENCORE database.

7 RBPs can affect the splicing of ASB3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ASB3	ENSG00000270898.1	chr2	-	53975417	53975504	53956594	53956707	53977919	53978078	0.50600	0.00000	0.00000	included	HepG2	U2AF1
SE	ASB3	ENSG00000270898.1	chr2	-	53975417	53975504	53956594	53956707	53977919	53978078	0.49100	0.00000	0.00000	included	HepG2	U2AF2
SE	ASB3	ENSG00000270898.1	chr2	-	53955848	53955984	53943702	53943880	53956594	53956707	-0.10500	0.00051	0.00690	excluded	K562	AQR
SE	ASB3	ENSG00000270898.1	chr2	-	53975417	53975504	53956594	53956707	53977919	53978078	0.20000	0.00000	0.00006	included	K562	U2AF1
SE	ASB3	ENSG00000270898.1	chr2	-	53990618	53990743	53978051	53978078	53992513	53992722	0.24400	0.00039	0.03194	included	K562	HNRNPL
SE	ASB3	ENSG00000270898.1	chr2	-	53975417	53975504	53956594	53956707	53977919	53978078	0.12600	0.00052	0.08893	included	K562	SBDS
SE	ASB3	ENSG00000270898.1	chr2	-	53990618	53990743	53978051	53978078	53992513	53992722	-0.10700	0.00354	0.07042	excluded	K562	RBM15
SE	ASB3	ENSG00000270898.1	chr2	-	53990618	53990743	53978051	53978078	53992513	53992722	-0.11600	0.00107	0.02939	excluded	K562	AGGF1
A3SS	ASB3	ENSG00000270898.1	chr2	-	53977919	53978126	53977919	53978078	53992513	53992722	0.09900	0.00134	0.00904	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ASB3

General Information

Functions

Localization

Domains (AlphaFold: ASB3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ASB3 is not avaliable on ENCORE database.

27 proteins are bound to ASB3 RNA:

eCLIP assay for ASB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ASB3 is not available on ENCORE database.

1 RBPs can affect the gene expression of ASB3 :

The Knockdown/knockout RNA-Seq assay for ASB3 is not available on ENCORE database.

7 RBPs can affect the splicing of ASB3 :

The Knockdown/knockout RNA-Seq assay for ASB3 is not avaliable on ENCORE database.