ZCCHC9

General Information

Gene Name       : ZCCHC9
Gene ID             : ENSG00000131732.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZCCHC9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZCCHC9ENSG00000131732.1142.4734.6038.53ENCSR000AEF
HepG2ZCCHC9ENSG00000131732.1127.1152.3239.72ENCSR985KAT
K562ZCCHC9ENSG00000131732.1145.0450.2447.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZCCHC9Ribo-STAMP-293TshRNAZCCHC9-BGRSLV05-51,ZCCHC9-BGRSLV05-52NT-BGRSLV05-1,NT-BGRSLV05-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZCCHC9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZCCHC9 RNA is bound by 10 proteins.  







eCLIP assay for ZCCHC9 is not avaliable on ENCORE database.





10 proteins are bound to ZCCHC9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58060889580608933+3'-UTR4.8249616.20576K562PABPC4
chr58060044680600555+5'-UTR,intron-Distal,intron-Proximal5.2571810.47957K562KHSRP
chr58060048180600559+5'-UTR,intron-Distal,intron-Proximal3.188243.29213HepG2KHSRP
chr58059818780598291+5'-UTR,intron-Distal3.769545.48327HepG2XPO5
chr58060056780600666+5'-UTR,CDS,intron-Distal3.414674.94406K562YBX3
chr58060055280600610+5'-UTR,CDS,intron-Distal,intron-Proximal3.520695.15500HepG2BCLAF1
chr58060056480600713+5'-UTR,CDS,intron-Distal3.194725.60602HepG2GRWD1
chr58060055680600622+5'-UTR,CDS,intron-Distal,intron-Proximal3.508606.09767K562UCHL5
chr58059744280597517+5'-UTR,intron-Proximal3.388843.74019K562DDX3X
chr58059743280597566+5'-UTR,intron-Proximal3.194654.88807HepG2NCBP2
chr58060437680604460+CDS,intron-Proximal3.138087.70439HepG2BCLAF1
chr58060703280607099+CDS,intron-Proximal3.938445.79432HepG2BCLAF1
chr58060836080608431+CDS,intron-Proximal5.326267.49561HepG2BCLAF1
chr58060446280604507+CDS3.513064.06757K562UCHL5
chr58060087480600955+CDS,intron-Distal3.706115.76104HepG2BCLAF1
chr58060446080604516+CDS3.203703.94979HepG2BCLAF1
chr58060087180600964+CDS,intron-Distal,intron-Proximal3.635626.43326K562UCHL5
chr58060836180608445+CDS,intron-Proximal3.697684.06757K562UCHL5
chr58060438280604511+CDS3.666074.30740K562PUM1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZCCHC9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZCCHC9 is not available on ENCORE database.

  • 69 RBPs can affect the levels of ZCCHC9.  








The Knockdown/knockout RNA-Seq assay for ZCCHC9 is not available on ENCORE database.





69 RBPs can affect the gene expression of ZCCHC9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZCCHC9ENSG00000131732.71479.222901037.600000.511504.584103.39570HepG2ABCF1
ZCCHC9ENSG00000131732.7596.71300710.37960-0.251601.921901.39790HepG2ACO1
ZCCHC9ENSG00000131732.7570.96830713.72540-0.322002.659101.90560HepG2AKAP8L
ZCCHC9ENSG00000131732.7753.219501066.64880-0.501906.857705.85450HepG2AUH
ZCCHC9ENSG00000131732.7269.34590541.91060-1.008605.763504.51880HepG2BCLAF1
ZCCHC9ENSG00000131732.7644.818701067.69710-0.727508.593707.60830HepG2BOP1
ZCCHC9ENSG00000131732.71070.21790873.110900.293602.186901.49590HepG2CALR
ZCCHC9ENSG00000131732.71104.91690867.151900.349502.291901.58380HepG2CIRBP
ZCCHC9ENSG00000131732.7334.91850542.56400-0.696003.672202.78530HepG2CNOT7
ZCCHC9ENSG00000131732.7626.29590980.22430-0.646306.275205.27040HepG2CPSF6
ZCCHC9ENSG00000131732.7770.717601012.45540-0.393605.473504.47860HepG2DAZAP1
ZCCHC9ENSG00000131732.7537.26990657.00390-0.290302.504401.70790HepG2DDX19B
ZCCHC9ENSG00000131732.7307.24820524.95690-0.772806.908705.18270HepG2DDX1
ZCCHC9ENSG00000131732.7731.48820565.067600.372302.458701.81520HepG2DDX21
ZCCHC9ENSG00000131732.7442.892001056.72430-1.2546018.5266017.06020HepG2DDX3X
ZCCHC9ENSG00000131732.7621.71960907.62090-0.545803.767403.05590HepG2DDX6
ZCCHC9ENSG00000131732.71047.11220679.643300.623505.248404.36930HepG2DKC1
ZCCHC9ENSG00000131732.7228.61530510.27440-1.1584012.3341011.06090HepG2DNAJC2
ZCCHC9ENSG00000131732.7300.03570872.64420-1.5403024.2604022.62340HepG2EIF2S1
ZCCHC9ENSG00000131732.7716.48770533.662400.424903.372702.19630HepG2EIF3G
ZCCHC9ENSG00000131732.71263.22680964.435400.389302.531401.91910HepG2EIF4A3
ZCCHC9ENSG00000131732.71263.71970899.003800.491204.894403.48220HepG2ESF1
ZCCHC9ENSG00000131732.71587.463001224.669600.374205.375604.58590HepG2ETF1
ZCCHC9ENSG00000131732.7783.032701047.78480-0.420202.320801.61170HepG2FIP1L1
ZCCHC9ENSG00000131732.7403.92840902.59550-1.1600014.8789013.39570HepG2G3BP1
ZCCHC9ENSG00000131732.7745.31030519.663700.520204.159303.38930HepG2HNRNPA1
ZCCHC9ENSG00000131732.7649.30190922.78680-0.507103.013601.96100HepG2KHSRP
ZCCHC9ENSG00000131732.7528.18470649.38220-0.298002.481901.51600HepG2KIF1C
ZCCHC9ENSG00000131732.7693.123301198.89160-0.790503.956702.96020HepG2LARP4
ZCCHC9ENSG00000131732.7755.00130978.70610-0.374402.099801.54570HepG2MATR3
ZCCHC9ENSG00000131732.7626.25980848.26300-0.437803.245602.37210HepG2MSI2
ZCCHC9ENSG00000131732.7310.306601001.78460-1.6908029.3680027.46880HepG2NCBP2
ZCCHC9ENSG00000131732.7781.460501003.94210-0.361403.528402.66720HepG2NOL12
ZCCHC9ENSG00000131732.71210.24380940.250500.364102.636501.90540HepG2NSUN2
ZCCHC9ENSG00000131732.7685.42940914.09780-0.415304.761504.00050HepG2PCBP1
ZCCHC9ENSG00000131732.7999.72790743.764600.426605.078304.06440HepG2PRPF4
ZCCHC9ENSG00000131732.7469.23210930.11360-0.9871020.3534019.13180HepG2PTBP1
ZCCHC9ENSG00000131732.7708.553801017.25580-0.521708.074607.17200HepG2PUM1
ZCCHC9ENSG00000131732.7465.00430723.56910-0.637909.026708.02000HepG2PUS1
ZCCHC9ENSG00000131732.7763.771701007.36820-0.399403.859803.13840HepG2QKI
ZCCHC9ENSG00000131732.7450.732401023.59420-1.1833026.2244024.95490HepG2RBM22
ZCCHC9ENSG00000131732.71134.87580803.458600.498104.513103.66950HepG2RPLP0
ZCCHC9ENSG00000131732.7354.33400525.12470-0.567504.450403.68970HepG2RPS19
ZCCHC9ENSG00000131732.7816.87520544.620200.584803.673902.75300HepG2RPS3A
ZCCHC9ENSG00000131732.7634.28260968.39540-0.610509.002508.02890HepG2SF3B4
ZCCHC9ENSG00000131732.7833.950601167.92700-0.485902.509101.76650HepG2SNRNP70
ZCCHC9ENSG00000131732.7924.956701156.10680-0.321803.773903.21650HepG2SRFBP1
ZCCHC9ENSG00000131732.7837.851201010.78410-0.270702.437801.98630HepG2SRSF1
ZCCHC9ENSG00000131732.7701.55910946.15050-0.431505.292204.46710HepG2SRSF5
ZCCHC9ENSG00000131732.7543.11430822.31720-0.598408.708007.82540HepG2SRSF9
ZCCHC9ENSG00000131732.71839.318601003.765400.8736026.9828025.75230HepG2SSB
ZCCHC9ENSG00000131732.7865.841501076.07460-0.313603.764203.05850HepG2SUCLG1
ZCCHC9ENSG00000131732.7743.691701033.46250-0.474703.944003.09690HepG2TARDBP
ZCCHC9ENSG00000131732.7279.00620409.13650-0.552302.335701.41340HepG2TFIP11
ZCCHC9ENSG00000131732.7608.18800834.82160-0.457004.185503.16520HepG2TIA1
ZCCHC9ENSG00000131732.7760.68840936.16990-0.299502.185401.41500HepG2TUFM
ZCCHC9ENSG00000131732.71233.77070896.456700.460702.301601.72350HepG2U2AF1
ZCCHC9ENSG00000131732.7695.55940952.10940-0.453005.972005.00870HepG2UPF1
ZCCHC9ENSG00000131732.7824.17410600.816300.455903.664102.83800HepG2XRN2
ZCCHC9ENSG00000131732.71109.832101400.33320-0.335402.664902.02310K562AKAP8L
ZCCHC9ENSG00000131732.7549.71400776.77790-0.498805.671004.27900K562BCLAF1
ZCCHC9ENSG00000131732.71024.113801462.15460-0.513705.794004.66640K562CPSF6
ZCCHC9ENSG00000131732.71861.562501589.617200.227702.545001.91670K562DDX47
ZCCHC9ENSG00000131732.7557.52410714.53980-0.358003.126101.82820K562EIF2S1
ZCCHC9ENSG00000131732.7657.06620445.821100.559502.570901.60480K562EIF3A
ZCCHC9ENSG00000131732.7841.61000706.786800.251801.842901.32920K562FXR1
ZCCHC9ENSG00000131732.71152.88760866.892100.411202.373001.72580K562G3BP2
ZCCHC9ENSG00000131732.7622.96150785.59300-0.334602.158401.62260K562HNRNPC
ZCCHC9ENSG00000131732.72113.594601718.454200.298502.191801.48190K562HSPD1
ZCCHC9ENSG00000131732.7495.87680704.34690-0.506303.528902.48920K562PSIP1
ZCCHC9ENSG00000131732.7673.74210998.93940-0.568204.236303.43080K562PTBP1
ZCCHC9ENSG00000131732.7923.877401388.80700-0.588106.693205.89120K562PUS1
ZCCHC9ENSG00000131732.7774.34060592.961700.384902.280801.54220K562RPS19
ZCCHC9ENSG00000131732.71006.284901183.84250-0.234402.304801.44260K562SRPK2
ZCCHC9ENSG00000131732.71119.77170868.323500.366803.518502.61320K562U2AF2
ZCCHC9ENSG00000131732.71075.969401411.75530-0.391902.715401.52630K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZCCHC9 is not available on ENCORE database.





10 RBPs can affect the splicing of ZCCHC9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806044710.121000.000280.05992includedK562FTO
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806044710.138000.000020.00423includedK562FMR1
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974428059748980604379806044710.083000.001410.05143includedK562FXR1
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806044710.162000.000000.00056includedK562HNRNPA1
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806045300.107000.000340.05758includedK562NSUN2
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806045300.137000.000000.00312includedK562GPKOW
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974428059748980604379806045300.101000.000100.02997includedK562SBDS
SEZCCHC9ENSG00000131732.7chr5+8059779480597874805974428059748980600559806009600.081000.001350.04270includedK562UTP18
SEZCCHC9ENSG00000131732.7chr5+806005598060096080597430805975178060437980604471-0.080000.005310.09744excludedK562AGGF1
SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974308059751780604379806044710.139000.000290.01553includedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZCCHC9 is not avaliable on ENCORE database.