C4orf36

General Information

Gene Name       : C4orf36
Gene ID             : ENSG00000163633.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4orf36)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C4orf36ENSG00000163633.110.250.930.59ENCSR000AEF
HepG2C4orf36ENSG00000163633.110.130.000.07ENCSR985KAT
K562C4orf36ENSG00000163633.110.210.300.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4orf36 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4orf36 RNA is bound by 1 proteins.  







eCLIP assay for C4orf36 is not avaliable on ENCORE database.





1 proteins are bound to C4orf36 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr48783838887838443-intron-Distal4.843324.67693K562PTBP1
chr48783844387838496-intron-Distal4.289863.42734K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4orf36 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4orf36 is not available on ENCORE database.

  • 62 RBPs can affect the levels of C4orf36.  








The Knockdown/knockout RNA-Seq assay for C4orf36 is not available on ENCORE database.





62 RBPs can affect the gene expression of C4orf36 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4orf36ENSG00000163633.654.0409097.60100-0.852802.547901.59070HepG2ADAR
C4orf36ENSG00000163633.6267.64720160.026800.741903.748302.54460HepG2AKAP8
C4orf36ENSG00000163633.6177.21390114.344000.632003.018002.30600HepG2AUH
C4orf36ENSG00000163633.6155.3510071.836001.112705.072104.29220HepG2BOP1
C4orf36ENSG00000163633.6172.1857098.637900.803703.567702.70860HepG2CALR
C4orf36ENSG00000163633.6176.00740113.064100.638402.579301.51210HepG2CPSF7
C4orf36ENSG00000163633.6212.74320125.428700.762104.186803.42710HepG2CELF1
C4orf36ENSG00000163633.671.72740116.30380-0.697302.660801.84130HepG2DDX19B
C4orf36ENSG00000163633.6163.6428077.188001.084003.816802.92360HepG2DDX55
C4orf36ENSG00000163633.6385.57640128.862201.581106.576505.65570HepG2DDX6
C4orf36ENSG00000163633.6161.5895085.778400.913503.641502.36040HepG2AGO1
C4orf36ENSG00000163633.6269.01590123.894601.118507.149706.22850HepG2EIF2S1
C4orf36ENSG00000163633.6139.2103063.547901.131303.801902.75200HepG2EIF3D
C4orf36ENSG00000163633.6139.6175066.068601.079302.654101.66040HepG2FTO
C4orf36ENSG00000163633.6246.42980128.147200.943305.375304.46080HepG2G3BP1
C4orf36ENSG00000163633.673.62250136.02830-0.885703.156702.20440HepG2G3BP2
C4orf36ENSG00000163633.6150.3124091.879500.710002.449601.49610HepG2GNB2L1
C4orf36ENSG00000163633.654.64470110.36580-1.014103.198802.46010HepG2HNRNPC
C4orf36ENSG00000163633.6130.8690071.323600.875602.860402.22150HepG2HNRNPLL
C4orf36ENSG00000163633.6106.01600174.09600-0.715602.496201.31940HepG2KRR1
C4orf36ENSG00000163633.667.52280138.17690-1.033104.041003.24930HepG2MAGOH
C4orf36ENSG00000163633.6217.02940112.203600.951705.331404.23820HepG2MSI2
C4orf36ENSG00000163633.6277.61500114.768101.274307.173205.69800HepG2PABPC1
C4orf36ENSG00000163633.658.86580117.26370-0.994304.003503.30120HepG2PCBP1
C4orf36ENSG00000163633.671.99370127.67300-0.826503.005902.38920HepG2PUF60
C4orf36ENSG00000163633.6280.24030106.932701.389907.508806.37860HepG2RAVER1
C4orf36ENSG00000163633.664.57540123.67450-0.937503.573702.88550HepG2RECQL
C4orf36ENSG00000163633.6275.43340105.502201.384306.746205.74660HepG2RPLP0
C4orf36ENSG00000163633.6203.5479058.873801.7896010.502309.11780HepG2RRP9
C4orf36ENSG00000163633.666.53410114.93470-0.788602.599601.94570HepG2SF3A3
C4orf36ENSG00000163633.6476.9106078.543802.602007.800806.48450HepG2SNRNP70
C4orf36ENSG00000163633.6248.53310123.931801.003807.595606.87830HepG2SRFBP1
C4orf36ENSG00000163633.678.91320129.66690-0.716502.327801.88430HepG2SRSF1
C4orf36ENSG00000163633.6347.62410105.489801.7203024.9549023.60770HepG2SRSF9
C4orf36ENSG00000163633.6223.7553099.924101.162905.314003.64900HepG2SUB1
C4orf36ENSG00000163633.6174.6899076.832001.184904.542703.70770HepG2SUPV3L1
C4orf36ENSG00000163633.667.82240116.54610-0.781102.647202.09760HepG2TAF15
C4orf36ENSG00000163633.676.52470170.52160-1.156004.107502.82590HepG2TBRG4
C4orf36ENSG00000163633.666.58040106.53810-0.678202.028701.58650HepG2TIAL1
C4orf36ENSG00000163633.6267.60980101.929601.3925011.8216010.55970HepG2UPF1
C4orf36ENSG00000163633.6229.79820112.102901.035408.149607.33940HepG2ZNF622
C4orf36ENSG00000163633.685.75830163.77710-0.933404.450303.76100K562AGGF1
C4orf36ENSG00000163633.6120.50630179.95160-0.578502.371701.47300K562AKAP8
C4orf36ENSG00000163633.682.03830170.41390-1.054705.394304.46530K562AKAP8L
C4orf36ENSG00000163633.665.96910150.70490-1.191904.791404.05710K562AQR
C4orf36ENSG00000163633.6105.15000178.79840-0.765903.801302.71750K562ATP5C1
C4orf36ENSG00000163633.6121.10870183.40020-0.598702.746601.87610K562DKC1
C4orf36ENSG00000163633.6106.35170165.56880-0.638602.119701.45250K562GRSF1
C4orf36ENSG00000163633.664.47540139.92140-1.117803.269501.91050K562HNRNPA2B1
C4orf36ENSG00000163633.6127.8243077.702300.718002.657201.78190K562HNRNPU
C4orf36ENSG00000163633.6113.80920180.86440-0.668302.655701.84920K562KIF1C
C4orf36ENSG00000163633.6117.34690202.61200-0.787903.892902.78470K562MBNL1
C4orf36ENSG00000163633.668.31340142.01530-1.055803.687802.63230K562NAA15
C4orf36ENSG00000163633.635.55730122.34500-1.782704.477603.13540K562PABPN1
C4orf36ENSG00000163633.6193.9373077.108001.330507.254505.90770K562PCBP3
C4orf36ENSG00000163633.6152.1851059.145301.363407.626806.32120K562POLR2G
C4orf36ENSG00000163633.659.46820169.02970-1.507108.531807.62570K562PUS1
C4orf36ENSG00000163633.667.97690164.67250-1.276507.118706.19680K562RBM15
C4orf36ENSG00000163633.652.4130095.05490-0.858802.707701.87670K562RBM22
C4orf36ENSG00000163633.6159.12550106.912400.573602.284001.42460K562SRPK2
C4orf36ENSG00000163633.653.2355097.20910-0.868702.599001.91110K562SRSF1
C4orf36ENSG00000163633.690.74200171.35230-0.917102.921401.58190K562UTP18
C4orf36ENSG00000163633.6110.02620178.52880-0.698303.100401.72510K562WRN
C4orf36ENSG00000163633.6115.80490169.78830-0.552002.136501.38850K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4orf36 is not available on ENCORE database.





4 RBPs can affect the splicing of C4orf36 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC4orf36ENSG00000163633.6chr4-878533738785347187847379878474788785454687854694-0.708000.002210.03947excludedK562SRSF1
SEC4orf36ENSG00000163633.6chr4-8785337387853471878473798784747887854546878546940.122000.006390.06447includedHepG2U2AF2
SEC4orf36ENSG00000163633.6chr4-878533738785347187847379878474788785454687854694-0.235000.000660.08046excludedK562LARP4
SEC4orf36ENSG00000163633.6chr4-8785337387853471878473798784747887854546878546940.276000.000250.05625includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C4orf36 is not avaliable on ENCORE database.