ZNF548

General Information

Gene Name       : ZNF548
Gene ID             : ENSG00000188785.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF548)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF548ENSG00000188785.1113.3811.0812.23ENCSR000AEF
HepG2ZNF548ENSG00000188785.117.939.758.84ENCSR985KAT
K562ZNF548ENSG00000188785.112.142.422.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF548 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF548 RNA is bound by 5 proteins.  







eCLIP assay for ZNF548 is not avaliable on ENCORE database.





5 proteins are bound to ZNF548 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195790147957901524+5'-UTR,CDS,intron-Distal,intron-Proximal5.670378.52745HepG2AQR
chr195790148057901494+5'-UTR,CDS,intron-Distal,intron-Proximal5.370319.94888HepG2PRPF8
chr195790147957901527+5'-UTR,CDS,intron-Distal,intron-Proximal4.388896.99120K562AQR
chr195790203857902109+5'-UTR,CDS,intron-Distal,intron-Proximal4.027315.63763K562AQR
chr195790407757904215+5'-UTR,CDS,intron-Distal,intron-Proximal3.989436.41317HepG2QKI
chr195790416757904340+5'-UTR,CDS,intron-Distal,intron-Proximal3.159223.47879HepG2PPIG
chr195790513157905304+intron-Distal3.666843.26999K562KHSRP
chr195790149457901532+intron-Distal,intron-Proximal4.7766411.25775HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF548 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF548 is not available on ENCORE database.

  • 75 RBPs can affect the levels of ZNF548.  








The Knockdown/knockout RNA-Seq assay for ZNF548 is not available on ENCORE database.





75 RBPs can affect the gene expression of ZNF548 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF548ENSG00000188785.7291.70440382.11100-0.389502.512301.92800HepG2ACO1
ZNF548ENSG00000188785.7460.65180300.415100.616604.280703.07000HepG2ADAR
ZNF548ENSG00000188785.7281.70160583.60880-1.050805.018604.32840HepG2AKAP1
ZNF548ENSG00000188785.7345.91520519.02840-0.585405.414304.57000HepG2CELF1
ZNF548ENSG00000188785.7491.91640353.412900.477004.573903.53800HepG2DDX19B
ZNF548ENSG00000188785.7564.00420351.654900.681405.816404.87300HepG2DDX21
ZNF548ENSG00000188785.7686.10200344.182600.9951013.2033011.27270HepG2DDX24
ZNF548ENSG00000188785.7382.95220559.12510-0.546001.988701.44970HepG2DDX3X
ZNF548ENSG00000188785.7310.08400480.13040-0.630802.106501.56100HepG2DDX6
ZNF548ENSG00000188785.7391.74230291.763000.425002.310901.41610HepG2DHX30
ZNF548ENSG00000188785.7566.56560365.585100.631906.583205.62280HepG2DKC1
ZNF548ENSG00000188785.7769.41750323.874301.2482013.9550011.69870HepG2AGO1
ZNF548ENSG00000188785.7831.00780510.346600.703305.487704.58830HepG2EIF4A3
ZNF548ENSG00000188785.7617.72090364.826400.7596010.656208.91720HepG2HDGF
ZNF548ENSG00000188785.7489.67260339.701700.527403.295702.54440HepG2HNRNPC
ZNF548ENSG00000188785.7298.34600483.27360-0.695903.191902.44350HepG2HNRNPK
ZNF548ENSG00000188785.7353.21980508.35650-0.525304.907004.02860HepG2HNRNPL
ZNF548ENSG00000188785.71032.03670298.925501.7875031.5987029.12230HepG2HNRNPM
ZNF548ENSG00000188785.7217.70400337.45560-0.632304.979804.18640HepG2HNRNPU
ZNF548ENSG00000188785.7405.35350290.447700.480802.960402.21380HepG2IGF2BP1
ZNF548ENSG00000188785.7681.61340514.850600.404702.261601.66620HepG2MAGOH
ZNF548ENSG00000188785.7463.10170350.685400.401102.477401.70990HepG2MSI2
ZNF548ENSG00000188785.7591.50170332.238100.832102.384501.49170HepG2MTPAP
ZNF548ENSG00000188785.7395.83240288.857300.454402.306601.62170HepG2NSUN2
ZNF548ENSG00000188785.7406.78440300.983000.434502.898302.14660HepG2PPIL4
ZNF548ENSG00000188785.7380.12920275.626200.463703.246002.41460HepG2PRPF4
ZNF548ENSG00000188785.7330.68600477.84820-0.531104.478703.81930HepG2PTBP1
ZNF548ENSG00000188785.7406.70670528.25560-0.377202.191301.65240HepG2PUF60
ZNF548ENSG00000188785.7396.28260560.35840-0.499803.837703.05140HepG2PUM2
ZNF548ENSG00000188785.7555.08620389.209600.512105.045804.25880HepG2PUS1
ZNF548ENSG00000188785.7651.15070400.696800.700403.341202.56950HepG2RAVER1
ZNF548ENSG00000188785.7431.63150317.767600.441702.258201.63220HepG2RPLP0
ZNF548ENSG00000188785.7199.07350274.91990-0.465702.087001.54650HepG2RPS19
ZNF548ENSG00000188785.7446.78760322.452900.470402.745502.04130HepG2SF3B1
ZNF548ENSG00000188785.7371.67950497.55800-0.420803.149702.52370HepG2SF3B4
ZNF548ENSG00000188785.7383.22750519.31990-0.438403.509602.99330HepG2SRSF1
ZNF548ENSG00000188785.71037.16700524.111500.9846023.4543022.28400HepG2SSB
ZNF548ENSG00000188785.7470.05580593.17620-0.335602.599901.99300HepG2SUCLG1
ZNF548ENSG00000188785.7439.69830317.518100.469602.638401.92820HepG2TARDBP
ZNF548ENSG00000188785.7449.26280327.892200.454203.140502.61310HepG2TIAL1
ZNF548ENSG00000188785.7635.85010370.587400.778807.248006.23800HepG2U2AF1
ZNF548ENSG00000188785.7302.13200440.58710-0.544202.444401.44990HepG2XRCC6
ZNF548ENSG00000188785.7409.95550272.000900.591805.155804.28750HepG2ZC3H8
ZNF548ENSG00000188785.7378.85150261.656700.533902.882501.62850K562ABCF1
ZNF548ENSG00000188785.7818.79590260.111501.654309.199808.23070K562AQR
ZNF548ENSG00000188785.7226.91290149.099900.605803.166102.14260K562BCLAF1
ZNF548ENSG00000188785.7316.33450130.840101.273504.639203.49900K562BOP1
ZNF548ENSG00000188785.7308.25050176.491000.804405.756003.57280K562CEBPZ
ZNF548ENSG00000188785.7426.95410217.344400.974005.427503.87780K562CNOT7
ZNF548ENSG00000188785.7282.15410139.121401.020007.509806.21210K562CPSF6
ZNF548ENSG00000188785.7619.09720361.935900.774308.329506.67330K562CELF1
ZNF548ENSG00000188785.7302.15670202.865300.574703.185201.87840K562DDX21
ZNF548ENSG00000188785.7352.24360253.539300.474303.095202.41080K562DDX47
ZNF548ENSG00000188785.7244.77970116.536001.070605.705803.83770K562EEF2
ZNF548ENSG00000188785.7177.17310112.571400.654202.275601.44810K562EFTUD2
ZNF548ENSG00000188785.7200.50080120.487200.734602.842701.79390K562EIF3D
ZNF548ENSG00000188785.7248.37700117.056201.085207.899806.51240K562EIF4A3
ZNF548ENSG00000188785.7500.60230294.403000.765808.146906.55480K562EIF4G2
ZNF548ENSG00000188785.7371.14000141.551101.3905013.3899011.45120K562FMR1
ZNF548ENSG00000188785.7273.08650119.976601.186508.396306.71020K562FTO
ZNF548ENSG00000188785.7212.25730136.378600.638102.539201.86690K562G3BP2
ZNF548ENSG00000188785.7209.76030132.827400.659102.837002.03210K562GPKOW
ZNF548ENSG00000188785.7324.55210200.690700.693403.847002.96130K562GRSF1
ZNF548ENSG00000188785.7247.01460158.846600.636903.442302.23930K562HNRNPA1
ZNF548ENSG00000188785.7365.98570123.771601.5640016.7367015.34720K562HNRNPC
ZNF548ENSG00000188785.7840.33590154.695002.4414051.2739047.50510K562HNRNPM
ZNF548ENSG00000188785.7230.94990113.416201.025904.980603.68410K562KRR1
ZNF548ENSG00000188785.7245.15690348.72400-0.508403.090802.12050K562MBNL1
ZNF548ENSG00000188785.7236.46960129.654100.866903.657802.64220K562METAP2
ZNF548ENSG00000188785.7458.99720313.813200.548503.652602.35360K562MSI2
ZNF548ENSG00000188785.7274.57830176.481500.637604.078903.11320K562MTPAP
ZNF548ENSG00000188785.7497.55630322.006600.627704.678502.70580K562NOL12
ZNF548ENSG00000188785.7340.40910196.076800.795807.054305.94230K562NSUN2
ZNF548ENSG00000188785.7507.40310321.223100.659505.418704.27930K562PUF60
ZNF548ENSG00000188785.7516.94250341.620400.597505.290103.77810K562PUM1
ZNF548ENSG00000188785.7452.65730334.772200.435103.030102.02830K562PUM2
ZNF548ENSG00000188785.7193.10970290.90630-0.591102.648202.11330K562PUS1
ZNF548ENSG00000188785.7177.06930283.43190-0.678704.100203.39550K562RBM15
ZNF548ENSG00000188785.7198.57390111.554000.831803.253702.36680K562RPS19
ZNF548ENSG00000188785.7366.38470193.492700.921004.352703.34790K562SF3A3
ZNF548ENSG00000188785.7269.41340126.321101.092606.671405.12080K562SF3B1
ZNF548ENSG00000188785.763.45210165.92150-1.386808.061106.86340K562SRSF1
ZNF548ENSG00000188785.7340.61460181.057300.911608.135706.13010K562SRSF7
ZNF548ENSG00000188785.7185.01040106.008900.803303.175102.08430K562SUPV3L1
ZNF548ENSG00000188785.7421.72700132.281901.6726019.1924016.14130K562U2AF1
ZNF548ENSG00000188785.7457.08890136.590001.7425028.3613025.84580K562U2AF2
ZNF548ENSG00000188785.7286.55880207.905200.462802.614801.91670K562UPF1
ZNF548ENSG00000188785.7357.37810177.896601.006309.340307.69230K562WDR3
ZNF548ENSG00000188785.7249.86620185.000700.433502.246001.47610K562WDR43
ZNF548ENSG00000188785.7192.61630114.320100.752603.163501.83840K562XRN2
ZNF548ENSG00000188785.7475.27110292.980100.697803.667702.64790K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF548 is not available on ENCORE database.





1 RBPs can affect the splicing of ZNF548 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF548ENSG00000188785.7chr19+5790416857904316579013325790148257905555579055910.340000.000220.05118includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF548 is not avaliable on ENCORE database.