PTPN3

General Information

Gene Name : PTPN3
Gene ID : ENSG00000070159.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTPN3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPN3	ENSG00000070159.13	0.23	0.16	0.20	ENCSR000AEF
HepG2	PTPN3	ENSG00000070159.13	5.14	6.84	5.99	ENCSR985KAT
K562	PTPN3	ENSG00000070159.13	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPN3 is not avaliable on ENCORE database.

Proteins bound to RNA

PTPN3 RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for PTPN3 is not avaliable on ENCORE database.

7 proteins are bound to PTPN3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	112150852	112150927	-	intron-Distal	5.25597	8.94499	HepG2	SUGP2
chr9	112150625	112150723	-	intron-Distal	3.40167	8.75882	HepG2	SUGP2
chr9	112148404	112148465	-	intron-Distal	5.11127	8.67089	HepG2	SUGP2
chr9	112150962	112151036	-	intron-Distal	3.61496	8.14948	HepG2	SUGP2
chr9	112148208	112148281	-	intron-Distal	5.09372	7.65425	HepG2	SUGP2
chr9	112149029	112149081	-	intron-Distal	4.80902	7.59209	HepG2	SUGP2
chr9	112148708	112148780	-	intron-Distal	3.24057	7.25521	HepG2	SUGP2
chr9	112148281	112148344	-	intron-Distal	4.02869	6.51675	HepG2	SUGP2
chr9	112150551	112150606	-	intron-Distal	3.68693	5.56133	HepG2	SUGP2
chr9	112150332	112150395	-	intron-Distal	3.31462	5.35016	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for PTPN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPN3 is not available on ENCORE database.
90 RBPs can affect the levels of PTPN3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTPN3 is not available on ENCORE database.

90 RBPs can affect the gene expression of PTPN3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPN3	ENSG00000070159.9	2848.71100	1056.29860	1.43120	81.44520	79.69850	HepG2	SRFBP1
PTPN3	ENSG00000070159.9	1733.61930	596.34470	1.53950	71.98540	69.96000	HepG2	SRSF9
PTPN3	ENSG00000070159.9	457.07490	917.09990	-1.00460	21.90740	20.76550	HepG2	SSB
PTPN3	ENSG00000070159.9	1534.64960	705.84880	1.12040	20.72300	18.98710	HepG2	SF3B1
PTPN3	ENSG00000070159.9	1519.17890	682.33170	1.15460	16.26910	14.93430	HepG2	DDX6
PTPN3	ENSG00000070159.9	1050.56300	495.54220	1.08400	12.94530	11.45150	HepG2	RRP9
PTPN3	ENSG00000070159.9	217.87440	480.17450	-1.14010	12.55180	10.74760	HepG2	GEMIN5
PTPN3	ENSG00000070159.9	1460.45260	974.55920	0.58350	10.88000	9.66840	HepG2	AUH
PTPN3	ENSG00000070159.9	1559.12440	707.27920	1.14030	9.87540	8.59950	HepG2	RAVER1
PTPN3	ENSG00000070159.9	321.25420	636.39460	-0.98620	9.81800	8.47030	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPN3 is not available on ENCORE database.

3 RBPs can affect the splicing of PTPN3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTPN3	ENSG00000070159.9	chr9	-	112184997	112185132	112182703	112182880	112189229	112189402	0.41900	0.00001	0.00032	included	HepG2	HNRNPK
SE	PTPN3	ENSG00000070159.9	chr9	-	112219452	112219495	112216775	112216854	112219571	112219679	-0.36900	0.00004	0.00220	excluded	HepG2	SF3A3
SE	PTPN3	ENSG00000070159.9	chr9	-	112184997	112185132	112182703	112182880	112189229	112189402	0.39500	0.00118	0.08964	included	HepG2	PRPF8

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPN3

General Information

Functions

Localization

Domains (AlphaFold: PTPN3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPN3 is not avaliable on ENCORE database.

7 proteins are bound to PTPN3 RNA:

eCLIP assay for PTPN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPN3 is not available on ENCORE database.

90 RBPs can affect the gene expression of PTPN3 :

The Knockdown/knockout RNA-Seq assay for PTPN3 is not available on ENCORE database.

3 RBPs can affect the splicing of PTPN3 :

The Knockdown/knockout RNA-Seq assay for PTPN3 is not avaliable on ENCORE database.