SLC4A11

General Information

Gene Name       : SLC4A11
Gene ID             : ENSG00000088836.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC4A11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC4A11ENSG00000088836.130.060.530.30ENCSR000AEF
HepG2SLC4A11ENSG00000088836.1312.703.678.18ENCSR985KAT
K562SLC4A11ENSG00000088836.130.340.330.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC4A11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC4A11 RNA is bound by 5 proteins.  







eCLIP assay for SLC4A11 is not avaliable on ENCORE database.





5 proteins are bound to SLC4A11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2032181743218258-5'-UTR,CDS,intron-Distal,intron-Proximal4.648413.59236HepG2AQR
chr2032195253219650-5'-UTR,intron-Distal5.1563615.85929HepG2EFTUD2
chr2032181523218192-CDS,intron-Distal,intron-Proximal4.922733.70131HepG2PRPF8
chr2032182383218324-CDS,intron-Distal,intron-Proximal4.853596.80569HepG2SF3B4
chr2032108903210914-CDS,intron-Distal,intron-Proximal3.624753.67894HepG2AQR
chr2032110993211164-CDS,intron-Distal,intron-Proximal4.205256.58230HepG2AQR
chr2032108793210935-CDS,intron-Distal,intron-Proximal3.909328.69552HepG2PRPF8
chr2032111163211148-intron-Distal,intron-Proximal6.0061811.80896HepG2PRPF8
chr2032109143210930-intron-Distal,intron-Proximal4.443474.28193HepG2AQR
chr2032110833211110-intron-Distal,intron-Proximal3.680264.71457HepG2PRPF8
chr2032104813210620-intron-Distal,intron-Proximal3.152234.70437HepG2RBFOX2
chr2032111483211161-intron-Distal,intron-Proximal5.498736.01989HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC4A11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC4A11 is not available on ENCORE database.

  • 104 RBPs can affect the levels of SLC4A11.  








The Knockdown/knockout RNA-Seq assay for SLC4A11 is not available on ENCORE database.





104 RBPs can affect the gene expression of SLC4A11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC4A11ENSG00000088836.8391.217801285.53810-1.716309.711108.11380HepG2ABCF1
SLC4A11ENSG00000088836.8701.56320951.71460-0.440003.818903.12560HepG2ACO1
SLC4A11ENSG00000088836.8137.94490500.23780-1.8585027.0372024.54220HepG2ADAR
SLC4A11ENSG00000088836.81097.12600458.491701.2587011.0982010.10140HepG2AKAP1
SLC4A11ENSG00000088836.81792.83740851.332501.0744015.5484013.31230HepG2AKAP8
SLC4A11ENSG00000088836.81788.857601020.954800.8090021.8938020.30150HepG2AUH
SLC4A11ENSG00000088836.81513.058601048.434400.529105.560004.74720HepG2BOP1
SLC4A11ENSG00000088836.8606.946501385.73760-1.191006.239904.74970HepG2CCAR1
SLC4A11ENSG00000088836.8150.29200360.38490-1.261802.748601.97840HepG2CIRBP
SLC4A11ENSG00000088836.8526.77620951.31090-0.8527011.5173010.34800HepG2CKAP4
SLC4A11ENSG00000088836.81195.49190962.543800.312602.205601.58360HepG2CPSF6
SLC4A11ENSG00000088836.81571.214301058.018600.570404.107302.77310HepG2CPSF7
SLC4A11ENSG00000088836.8126.79000316.58490-1.320205.649904.19350HepG2CSTF2
SLC4A11ENSG00000088836.81019.59550795.133200.358603.518702.69980HepG2DAZAP1
SLC4A11ENSG00000088836.8333.34870880.10920-1.4007021.1861019.39740HepG2DDX19B
SLC4A11ENSG00000088836.8162.89160457.26670-1.4891016.7279015.23180HepG2DDX21
SLC4A11ENSG00000088836.8122.79830447.91320-1.8669019.3136017.15260HepG2DDX24
SLC4A11ENSG00000088836.81626.08080439.075601.8888038.6047036.54940HepG2DDX3X
SLC4A11ENSG00000088836.81441.35530377.469001.9329014.7563013.48120HepG2DDX6
SLC4A11ENSG00000088836.8215.75620910.48210-2.0772034.8191033.11640HepG2DKC1
SLC4A11ENSG00000088836.81003.49620503.692300.994307.670406.54650HepG2DNAJC21
SLC4A11ENSG00000088836.8296.34940632.39890-1.093503.024502.06160HepG2EEF2
SLC4A11ENSG00000088836.81441.40730362.578301.9910043.9310041.80890HepG2EIF2S1
SLC4A11ENSG00000088836.8190.67680432.10980-1.1803011.612409.71670HepG2EIF3G
SLC4A11ENSG00000088836.8176.90930400.55050-1.179002.605001.98360HepG2EIF4A3
SLC4A11ENSG00000088836.81258.20120751.602400.743202.491901.71730HepG2EIF4G2
SLC4A11ENSG00000088836.8316.967601113.18580-1.8123013.5907011.48090HepG2ESF1
SLC4A11ENSG00000088836.8437.03850929.82050-1.0892013.5812011.80460HepG2EWSR1
SLC4A11ENSG00000088836.82271.582301297.950100.807404.776703.78800HepG2FIP1L1
SLC4A11ENSG00000088836.8848.79580384.886401.140907.739206.46210HepG2FUBP3
SLC4A11ENSG00000088836.8722.78980404.565800.837103.382002.62140HepG2FXR1
SLC4A11ENSG00000088836.8593.15930375.069400.661202.144501.55620HepG2G3BP1
SLC4A11ENSG00000088836.8174.28030456.93860-1.390604.526403.37280HepG2GEMIN5
SLC4A11ENSG00000088836.8629.80450419.301500.586803.913402.69920HepG2GNB2L1
SLC4A11ENSG00000088836.8383.958101091.18370-1.5069015.4558014.06040HepG2GPKOW
SLC4A11ENSG00000088836.8889.70960467.110400.929504.273802.89630HepG2GRSF1
SLC4A11ENSG00000088836.8110.30620508.51840-2.2048033.4055031.63900HepG2HNRNPA1
SLC4A11ENSG00000088836.81100.00200417.031401.3992019.6674016.15580HepG2HNRNPAB
SLC4A11ENSG00000088836.81165.49390380.316301.615608.156507.00510HepG2HNRNPK
SLC4A11ENSG00000088836.8987.23620724.236900.446804.176603.36110HepG2HNRNPL
SLC4A11ENSG00000088836.8716.38980561.909100.350302.971402.34530HepG2HNRNPU
SLC4A11ENSG00000088836.8840.704601064.41570-0.340402.737702.01780HepG2IGF2BP1
SLC4A11ENSG00000088836.81005.37980573.968600.8086019.4273017.68520HepG2ILF2
SLC4A11ENSG00000088836.8509.658101464.30940-1.522607.665706.26940HepG2LARP4
SLC4A11ENSG00000088836.8837.64930410.879101.0275013.6173011.28450HepG2LARP7
SLC4A11ENSG00000088836.8229.77510431.29620-0.908508.228106.22590HepG2LIN28B
SLC4A11ENSG00000088836.8172.38410404.70890-1.231302.586301.95110HepG2MAGOH
SLC4A11ENSG00000088836.8827.65870537.065600.623802.848601.77980HepG2METAP2
SLC4A11ENSG00000088836.8654.084401049.88230-0.682703.418702.52120HepG2MSI2
SLC4A11ENSG00000088836.8750.124101061.87920-0.501402.167501.31840HepG2MTPAP
SLC4A11ENSG00000088836.81280.95430416.433001.6210027.9536026.09680HepG2NCBP2
SLC4A11ENSG00000088836.81101.83010788.464500.482702.556401.82360HepG2NOL12
SLC4A11ENSG00000088836.8365.32570923.29150-1.3376016.8855015.22130HepG2NSUN2
SLC4A11ENSG00000088836.81174.51930461.269101.3483012.8066010.85490HepG2PABPC1
SLC4A11ENSG00000088836.8744.66670370.601201.006605.982204.93110HepG2PABPC4
SLC4A11ENSG00000088836.8241.87040753.43150-1.6392040.9785038.75100HepG2PRPF4
SLC4A11ENSG00000088836.8156.26410477.06600-1.610206.124804.37420HepG2PRPF6
SLC4A11ENSG00000088836.8238.08500388.66180-0.707002.826402.00830HepG2PRPF8
SLC4A11ENSG00000088836.8642.24290394.893400.701604.401203.74610HepG2PTBP1
SLC4A11ENSG00000088836.8423.96900752.72110-0.828206.638805.76860HepG2PUF60
SLC4A11ENSG00000088836.8377.27870969.35420-1.3614020.2268018.83570HepG2PUS1
SLC4A11ENSG00000088836.8697.56260437.781700.672002.909402.18820HepG2RAVER1
SLC4A11ENSG00000088836.81328.12970979.718800.438905.749505.07110HepG2RBM22
SLC4A11ENSG00000088836.8732.53550388.079300.9164011.9340010.59320HepG2RBM25
SLC4A11ENSG00000088836.8242.13770402.34410-0.732604.017402.73820HepG2RCC2
SLC4A11ENSG00000088836.8667.90740466.452000.517802.927801.82020HepG2RPS5
SLC4A11ENSG00000088836.82081.28290384.435802.4366020.5827018.81250HepG2RRP9
SLC4A11ENSG00000088836.8831.42240500.394700.7324012.6242011.39770HepG2SAFB2
SLC4A11ENSG00000088836.8263.48470481.42660-0.869603.184001.51610HepG2SBDS
SLC4A11ENSG00000088836.81000.96970501.161000.998004.244203.08680HepG2SERBP1
SLC4A11ENSG00000088836.8464.94270854.80660-0.878504.124503.29260HepG2SF3A3
SLC4A11ENSG00000088836.8569.007001030.74950-0.8572010.811809.50200HepG2SF3B1
SLC4A11ENSG00000088836.8643.78860411.028300.647204.468203.74410HepG2SF3B4
SLC4A11ENSG00000088836.81385.78390583.527501.2477047.7968045.73630HepG2SMN1
SLC4A11ENSG00000088836.81432.09620447.539801.677909.402307.58250HepG2SMNDC1
SLC4A11ENSG00000088836.8775.590901146.87600-0.564303.250902.40190HepG2SNRNP70
SLC4A11ENSG00000088836.8891.857901106.56660-0.311203.038302.52120HepG2SRFBP1
SLC4A11ENSG00000088836.8796.096801108.98280-0.478202.976801.93090HepG2SRSF3
SLC4A11ENSG00000088836.81125.94100743.290400.5990010.471509.35780HepG2SRSF5
SLC4A11ENSG00000088836.8850.58240349.107201.2847031.1897029.72580HepG2SRSF9
SLC4A11ENSG00000088836.892.87730960.77960-3.37080135.57790133.47590HepG2SSB
SLC4A11ENSG00000088836.8540.12890934.85390-0.791406.665204.63950HepG2SUGP2
SLC4A11ENSG00000088836.8182.20750385.78390-1.082204.077503.41750HepG2TAF15
SLC4A11ENSG00000088836.8439.65510907.17330-1.045006.159704.63870HepG2TBRG4
SLC4A11ENSG00000088836.8849.12320336.329501.3360016.2436014.26270HepG2TFIP11
SLC4A11ENSG00000088836.8412.53900545.93440-0.404202.831702.32660HepG2TIAL1
SLC4A11ENSG00000088836.81899.55530550.884801.7857092.3515089.74240HepG2TRIM56
SLC4A11ENSG00000088836.81295.11370602.163401.104803.670102.52830HepG2U2AF2
SLC4A11ENSG00000088836.8689.87070296.406901.2186014.4533012.75530HepG2UCHL5
SLC4A11ENSG00000088836.8518.95990779.16670-0.586302.595001.57400HepG2UTP18
SLC4A11ENSG00000088836.8233.71520731.89600-1.646908.585307.62480HepG2UTP3
SLC4A11ENSG00000088836.8154.76920494.03840-1.674506.895805.76520HepG2XRN2
SLC4A11ENSG00000088836.81045.23240833.744200.326001.897601.42170HepG2ZNF622
SLC4A11ENSG00000088836.83.0432033.51880-3.461304.412403.70290K562AQR
SLC4A11ENSG00000088836.85.8920032.55090-2.465903.677302.42080K562CNOT7
SLC4A11ENSG00000088836.815.3851048.96210-1.670103.203702.15640K562CELF1
SLC4A11ENSG00000088836.855.7135021.297201.387302.983802.06720K562DKC1
SLC4A11ENSG00000088836.81.0015014.88500-3.893603.058601.70740K562EEF2
SLC4A11ENSG00000088836.84.8458019.66160-2.020601.944301.43270K562HNRNPC
SLC4A11ENSG00000088836.81.8892020.44920-3.436204.167702.33530K562ILF3
SLC4A11ENSG00000088836.849.1540023.530701.062702.245101.44060K562MBNL1
SLC4A11ENSG00000088836.811.3809042.46730-1.899703.251902.02450K562MSI2
SLC4A11ENSG00000088836.874.0465017.626902.070606.517805.03460K562PSIP1
SLC4A11ENSG00000088836.812.9810035.50950-1.451802.612801.81960K562SF3A3
SLC4A11ENSG00000088836.84.2411024.45560-2.527702.910901.43750K562SUPT6H
SLC4A11ENSG00000088836.88.5213038.15310-2.162704.445403.55720K562UPF1
SLC4A11ENSG00000088836.85.7110032.64610-2.515104.513803.38240K562WDR3
SLC4A11ENSG00000088836.88.2776037.76370-2.189704.476903.33750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC4A11 is not available on ENCORE database.





5 RBPs can affect the splicing of SLC4A11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSLC4A11ENSG00000088836.8chr20-321415932143813214159321428332145663214648-0.117000.001690.04070shorterHepG2U2AF2
A3SSSLC4A11ENSG00000088836.8chr20-321016932104223210169321035232108323210906-0.208000.000140.00509shorterHepG2U2AF2
A3SSSLC4A11ENSG00000088836.8chr20-321016932104223210169321035232108323210906-0.146000.000540.07878shorterHepG2TIAL1
A3SSSLC4A11ENSG00000088836.8chr20-320974032099093209740320985932099913210017-0.186000.000000.00105shorterHepG2RBM22
RISLC4A11ENSG00000088836.8chr20-3209740321009832097403209909320999132100980.190000.005500.05749includedHepG2PRPF8
RISLC4A11ENSG00000088836.8chr20-3209740321009832097403209909320999132100980.124000.001450.01579includedHepG2U2AF1
RISLC4A11ENSG00000088836.8chr20-3209740321009832097403209909320999132100980.127000.000360.00542includedHepG2RBM22
RISLC4A11ENSG00000088836.8chr20-320974032100983209740320985932099913210098-0.259000.000250.00413excludedHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC4A11 is not avaliable on ENCORE database.