TRMT1L

General Information

Gene Name       : TRMT1L
Gene ID             : ENSG00000121486.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRMT1L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRMT1LENSG00000121486.1117.1515.3116.23ENCSR000AEF
HepG2TRMT1LENSG00000121486.118.3212.5810.45ENCSR985KAT
K562TRMT1LENSG00000121486.1126.5930.5228.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRMT1L is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRMT1L RNA is bound by 13 proteins.  







eCLIP assay for TRMT1L is not avaliable on ENCORE database.





13 proteins are bound to TRMT1L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1185094071185094090-3'-UTR,CDS,intron-Distal,intron-Proximal4.313854.30417K562YBX3
chr1185088208185088306-3'-UTR,intron-Distal4.303996.41483HepG2SUB1
chr1185087884185088004-3'-UTR,intron-Distal5.0705012.02341K562FAM120A
chr1185088188185088306-3'-UTR,intron-Distal5.249075.78691HepG2FUBP3
chr1185089223185089293-3'-UTR,CDS,intron-Distal3.124933.78871K562IGF2BP1
chr1185125882185126016-5'-UTR,intron-Distal3.217717.47467K562GEMIN5
chr1185125607185125688-5'-UTR,CDS,intron-Distal3.939993.82414HepG2HNRNPK
chr1185108555185108668-CDS,intron-Distal3.522878.07578K562YBX3
chr1185106736185106781-CDS,intron-Distal,intron-Proximal3.909845.85226K562UCHL5
chr1185106757185106845-CDS,intron-Distal3.425475.65306K562ZNF622
chr1185113092185113217-CDS,intron-Distal,intron-Proximal3.535915.55825HepG2U2AF2
chr1185106730185106779-CDS,intron-Distal,intron-Proximal4.337623.89826HepG2BCLAF1
chr1185114605185114671-CDS,intron-Distal4.033664.07825K562YBX3
chr1185109136185109296-CDS,intron-Distal4.902275.68196HepG2BCLAF1
chr1185097834185097881-CDS,intron-Distal,intron-Proximal3.310873.17151K562UCHL5
chr1185121752185121847-intron-Distal4.472103.41738HepG2PTBP1
chr1185111828185111964-intron-Distal3.322234.08064K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRMT1L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRMT1L is not available on ENCORE database.

  • 64 RBPs can affect the levels of TRMT1L.  








The Knockdown/knockout RNA-Seq assay for TRMT1L is not available on ENCORE database.





64 RBPs can affect the gene expression of TRMT1L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRMT1LENSG00000121486.7470.62290687.20150-0.546204.012703.19870HepG2CPSF6
TRMT1LENSG00000121486.7636.04280793.95220-0.319902.756802.11470HepG2CELF1
TRMT1LENSG00000121486.7676.91100853.78620-0.334903.895903.04030HepG2DAZAP1
TRMT1LENSG00000121486.7620.19560448.159800.468603.582802.53450HepG2DDX24
TRMT1LENSG00000121486.7578.85120759.01830-0.390902.110901.56470HepG2DDX6
TRMT1LENSG00000121486.7670.77790543.221700.304202.272601.64870HepG2DKC1
TRMT1LENSG00000121486.7381.84540486.04340-0.348102.716502.06930HepG2DNAJC2
TRMT1LENSG00000121486.7488.34350785.08520-0.685004.422803.56410HepG2EIF4B
TRMT1LENSG00000121486.7317.87360423.51990-0.414002.259101.54240HepG2FUBP3
TRMT1LENSG00000121486.7631.88660813.58160-0.364602.161501.54650HepG2FXR1
TRMT1LENSG00000121486.7561.84910754.68850-0.425702.561401.92030HepG2G3BP1
TRMT1LENSG00000121486.7509.19190801.23480-0.654005.680504.39320HepG2G3BP2
TRMT1LENSG00000121486.7373.32100550.70130-0.560903.912803.09910HepG2HNRNPC
TRMT1LENSG00000121486.7446.10780777.76190-0.8019014.4390013.01110HepG2HNRNPL
TRMT1LENSG00000121486.7791.52690547.061200.532806.748905.84030HepG2HNRNPU
TRMT1LENSG00000121486.7468.26520719.94350-0.620602.294801.40600HepG2IGF2BP3
TRMT1LENSG00000121486.7490.71400771.60450-0.653004.284003.00870HepG2KHSRP
TRMT1LENSG00000121486.7624.97620967.20820-0.630004.588803.51100HepG2LARP4
TRMT1LENSG00000121486.7511.72210813.86580-0.669405.815504.87520HepG2MAGOH
TRMT1LENSG00000121486.7347.69850477.08000-0.456402.877601.64000HepG2NAA15
TRMT1LENSG00000121486.7638.25880837.68360-0.392302.288801.71060HepG2NCBP2
TRMT1LENSG00000121486.7702.52700846.60760-0.269102.046101.38790HepG2NOL12
TRMT1LENSG00000121486.7562.03850668.55560-0.250401.832501.32150HepG2PCBP1
TRMT1LENSG00000121486.7338.01690487.93680-0.529604.481203.56360HepG2PPIL4
TRMT1LENSG00000121486.7601.52640857.84120-0.512107.673606.78810HepG2PUM1
TRMT1LENSG00000121486.7343.83800487.18860-0.502804.476903.69110HepG2SAFB2
TRMT1LENSG00000121486.7557.46370708.29250-0.345502.954702.34760HepG2SF3B4
TRMT1LENSG00000121486.7599.27830774.81400-0.370603.957503.14110HepG2SLBP
TRMT1LENSG00000121486.7378.28780560.97160-0.568403.241602.19530HepG2SMNDC1
TRMT1LENSG00000121486.71054.53900906.550100.218101.807501.37660HepG2SRFBP1
TRMT1LENSG00000121486.7530.95560739.27210-0.477505.148004.55420HepG2SRSF1
TRMT1LENSG00000121486.7463.28420791.75260-0.773206.100904.56830HepG2SRSF3
TRMT1LENSG00000121486.7611.22490797.87980-0.384503.887903.16770HepG2SRSF5
TRMT1LENSG00000121486.7987.06310787.120100.326503.457402.89860HepG2SSB
TRMT1LENSG00000121486.7772.88510907.44010-0.231502.031901.48290HepG2SUCLG1
TRMT1LENSG00000121486.7498.84300724.54650-0.538504.186303.31750HepG2TARDBP
TRMT1LENSG00000121486.7419.56150531.61300-0.341502.226001.76780HepG2TIAL1
TRMT1LENSG00000121486.7330.66600536.32140-0.697708.267907.37570HepG2TRIM56
TRMT1LENSG00000121486.7605.68900789.46480-0.382302.939102.03560HepG2TUFM
TRMT1LENSG00000121486.7874.50830600.511000.542204.251503.48140HepG2U2AF1
TRMT1LENSG00000121486.7204.91680335.25490-0.710204.051603.13320HepG2UCHL5
TRMT1LENSG00000121486.7360.49960581.33990-0.689407.873706.94670HepG2UTP3
TRMT1LENSG00000121486.7833.13930605.419700.460502.383801.40040HepG2XRCC6
TRMT1LENSG00000121486.7542.06260662.23560-0.288902.420201.89880HepG2ZNF622
TRMT1LENSG00000121486.71418.782402172.64650-0.614807.406806.52190K562AQR
TRMT1LENSG00000121486.71889.275501513.970200.319403.651902.59060K562ATP5C1
TRMT1LENSG00000121486.71156.979101550.21370-0.422104.576803.57010K562CPSF6
TRMT1LENSG00000121486.7906.438201167.85180-0.365603.209402.08200K562DDX3X
TRMT1LENSG00000121486.7966.898201184.03330-0.292302.694201.41110K562DDX6
TRMT1LENSG00000121486.71211.309401544.66870-0.350704.150203.29590K562EIF2S2
TRMT1LENSG00000121486.7489.05360699.41630-0.516202.258601.36050K562EIF3A
TRMT1LENSG00000121486.7755.700401106.86610-0.550607.509606.20860K562EIF3G
TRMT1LENSG00000121486.7799.238601220.09450-0.610307.150505.83740K562EIF4A3
TRMT1LENSG00000121486.7896.098801098.73990-0.294102.666001.54050K562EIF4B
TRMT1LENSG00000121486.71085.263901268.84310-0.225501.911101.39010K562FXR1
TRMT1LENSG00000121486.71592.772602058.53690-0.370103.727202.85380K562GRSF1
TRMT1LENSG00000121486.7661.612801259.38600-0.9287015.5467014.21510K562HNRNPC
TRMT1LENSG00000121486.72221.586401619.735400.455704.208102.64380K562HNRNPK
TRMT1LENSG00000121486.71622.242101963.06440-0.275102.284801.33450K562HNRNPL
TRMT1LENSG00000121486.72494.613201779.887700.486907.739706.25280K562HNRNPU
TRMT1LENSG00000121486.71669.927902060.03100-0.302902.421601.67350K562HSPD1
TRMT1LENSG00000121486.71229.143201620.91240-0.399202.614101.62620K562IGF2BP2
TRMT1LENSG00000121486.71111.164501704.19690-0.617008.042206.57550K562MAGOH
TRMT1LENSG00000121486.72024.653801405.990900.526004.872203.77150K562PCBP3
TRMT1LENSG00000121486.71495.828401078.397200.472005.798504.64230K562POLR2G
TRMT1LENSG00000121486.7866.847801129.14450-0.381402.856101.93480K562PSIP1
TRMT1LENSG00000121486.71143.132901655.68310-0.534404.503203.67600K562PTBP1
TRMT1LENSG00000121486.71072.273301431.06440-0.416403.679803.06640K562PUS1
TRMT1LENSG00000121486.7958.807401587.97480-0.727908.828507.19680K562RBM22
TRMT1LENSG00000121486.71012.686601337.52060-0.401403.318402.38020K562SF3B4
TRMT1LENSG00000121486.7684.00770976.49050-0.513604.543503.13980K562SRFBP1
TRMT1LENSG00000121486.71482.324501791.73530-0.273503.607902.55500K562SRPK2
TRMT1LENSG00000121486.7526.739801623.04490-1.6235032.7470030.35080K562SRSF1
TRMT1LENSG00000121486.71163.162601532.65430-0.398003.495802.29060K562SRSF5
TRMT1LENSG00000121486.71021.707301642.79220-0.685207.801606.53800K562TARDBP
TRMT1LENSG00000121486.71207.595201584.61530-0.392004.048303.03060K562TIA1
TRMT1LENSG00000121486.71154.111401554.58850-0.429804.124402.74690K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRMT1L is not available on ENCORE database.





6 RBPs can affect the splicing of TRMT1L :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRMT1LENSG00000121486.7chr1-185108498185108711185106737185106928185109104185109354-0.056000.001130.01564excludedHepG2U2AF2
SETRMT1LENSG00000121486.7chr1-185108498185108711185106737185106928185109104185109354-0.156000.000340.03726excludedHepG2SRSF7
SETRMT1LENSG00000121486.7chr1-1850929881850930511850895141850896411850940751850942420.054000.000020.01390includedK562PPIL4
SETRMT1LENSG00000121486.7chr1-1850929881850930511850895141850896411850940751850942420.056000.000010.00616includedK562SBDS
SETRMT1LENSG00000121486.7chr1-185108498185108711185106737185106928185109104185109354-0.086000.000190.01251excludedK562HNRNPK
A3SSTRMT1LENSG00000121486.7chr1-1850940751850943171850940751850942421850978001850980040.054000.000280.00222longerK562AQR
A3SSTRMT1LENSG00000121486.7chr1-1851130371851132071851130371851131611851145701851147000.058000.000010.00011longerK562AQR
MXETRMT1LENSG00000121486.7chr1-185109104185109354185112488185112568185106737185106928185113037185113161-0.524000.000020.000242includedHepG2U2AF2
MXETRMT1LENSG00000121486.7chr1-185109104185109354185113037185113161185106737185106928185114570185114700-0.066000.000390.028802includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRMT1L is not avaliable on ENCORE database.