RNASEK-C17orf49

General Information

Gene Name : RNASEK-C17orf49
Gene ID : ENSG00000161939.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNASEK-C17orf49)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNASEK-C17orf49	ENSG00000161939.19	0.00	0.96	0.48	ENCSR000AEF
HepG2	RNASEK-C17orf49	ENSG00000161939.19	0.68	0.07	0.38	ENCSR985KAT
K562	RNASEK-C17orf49	ENSG00000161939.19	4.01	1.19	2.60	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNASEK-C17orf49 is not avaliable on ENCORE database.

Proteins bound to RNA

RNASEK-C17orf49 RNA is bound by 14 proteins.

eCLIP assay for RNASEK-C17orf49 is not avaliable on ENCORE database.

14 proteins are bound to RNASEK-C17orf49 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	6920615	6920670	+	3'-UTR,CDS	3.97177	3.87091	K562	IGF2BP2
chr17	6920606	6920710	+	3'-UTR,CDS	3.05326	3.70380	HepG2	LARP4
chr17	6920670	6920800	+	3'-UTR	3.48268	4.54958	K562	IGF2BP2
chr17	6919811	6919842	+	CDS,intron-Proximal	3.46024	7.36929	K562	YBX3
chr17	6917057	6917060	+	3'-UTR,CDS	4.11172	4.32914	K562	YBX3
chr17	6917514	6917573	+	3'-UTR,CDS	4.11376	14.95230	HepG2	LARP4
chr17	6917573	6917637	+	3'-UTR,CDS,intron-Proximal	6.68899	26.85709	HepG2	LARP4
chr17	6919918	6919982	+	CDS,intron-Distal,intron-Proximal	5.26654	20.52075	K562	YBX3
chr17	6917521	6917528	+	3'-UTR,CDS	4.61689	20.61611	K562	YBX3
chr17	6917464	6917476	+	3'-UTR,CDS	3.54127	5.37252	K562	YBX3
chr17	6917461	6917487	+	3'-UTR,CDS,intron-Proximal	3.56894	3.20659	K562	SND1
chr17	6917595	6917699	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.69262	6.10902	HepG2	PCBP1
chr17	6919858	6919918	+	CDS,intron-Proximal	3.87124	5.53855	K562	YBX3
chr17	6917528	6917588	+	3'-UTR,CDS	3.56933	24.61552	K562	YBX3
chr17	6917476	6917521	+	3'-UTR,CDS	4.60088	25.06232	K562	YBX3
chr17	6918470	6918535	+	CDS,intron-Proximal	4.99984	6.35567	HepG2	PRPF8
chr17	6916995	6917059	+	3'-UTR,CDS	3.84747	6.79756	K562	SND1
chr17	6917434	6917500	+	3'-UTR,CDS,intron-Proximal	4.51222	4.28193	HepG2	AQR
chr17	6917732	6917835	+	3'-UTR,5'-UTR,intron-Distal	3.07102	4.52597	K562	UPF1
chr17	6917697	6917829	+	3'-UTR,5'-UTR,intron-Distal	4.34860	22.42988	HepG2	PCBP2
chr17	6917699	6917824	+	3'-UTR,5'-UTR,intron-Distal	5.41067	11.64291	HepG2	PCBP1
chr17	6917730	6917786	+	3'-UTR,intron-Distal	4.57197	31.14720	HepG2	LARP4
chr17	6917744	6917783	+	3'-UTR,intron-Distal	3.21983	4.84690	K562	PABPC4
chr17	6917668	6917790	+	3'-UTR,intron-Distal,intron-Proximal	3.95263	13.12150	K562	PCBP1
chr17	6917702	6917727	+	3'-UTR,intron-Distal	4.19426	13.61457	K562	YBX3
chr17	6917646	6917702	+	3'-UTR,intron-Distal,intron-Proximal	3.37790	12.53474	K562	YBX3
chr17	6917683	6917730	+	3'-UTR,intron-Distal,intron-Proximal	3.75427	15.85755	HepG2	LARP4
chr17	6917689	6917744	+	3'-UTR,intron-Distal,intron-Proximal	3.49654	5.66231	K562	PABPC4
chr17	6917637	6917807	+	3'-UTR,intron-Distal,intron-Proximal	3.01627	16.85645	HepG2	DDX55
chr17	6916102	6916223	+	intron-Distal,intron-Proximal	6.09622	9.35430	HepG2	EFTUD2
chr17	6917652	6917820	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.97954	7.81366	HepG2	UPF1
chr17	6918128	6918189	+	5'-UTR,CDS,intron-Distal	6.35119	8.23278	HepG2	DDX3X
chr17	6917786	6917820	+	3'-UTR,5'-UTR,intron-Distal	4.72667	17.20804	HepG2	LARP4
chr17	6917805	6917844	+	3'-UTR,5'-UTR,intron-Distal	5.40076	8.52455	K562	PABPC4
chr17	6917639	6917693	+	3'-UTR,intron-Proximal	3.76110	7.43270	HepG2	PCBP2
chr17	6917599	6917668	+	3'-UTR,CDS,intron-Proximal	5.36902	6.14498	K562	PCBP1
chr17	6917637	6917683	+	3'-UTR,intron-Proximal	4.17020	14.25869	HepG2	LARP4
chr17	6915968	6916077	+	5'-UTR,CDS,intron-Proximal	4.64787	29.03261	HepG2	DDX3X
chr17	6917641	6917682	+	3'-UTR,intron-Proximal	4.90198	13.70377	K562	PABPC4
chr17	6917629	6917689	+	3'-UTR,intron-Proximal	4.12652	3.87385	HepG2	AKAP1
chr17	6917600	6917641	+	3'-UTR,CDS,intron-Proximal	5.33734	12.17370	K562	PABPC4
chr17	6917076	6917130	+	intron-Proximal	4.08836	5.90868	HepG2	PRPF8
chr17	6915994	6916080	+	5'-UTR,CDS,intron-Proximal	3.86828	29.52149	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RNASEK-C17orf49 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNASEK-C17orf49 is not available on ENCORE database.
12 RBPs can affect the levels of RNASEK-C17orf49.

The Knockdown/knockout RNA-Seq assay for RNASEK-C17orf49 is not available on ENCORE database.

12 RBPs can affect the gene expression of RNASEK-C17orf49 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNASEK-C17orf49	ENSG00000161939.14	8.61060	0.00000	99999.99990	2.52270	1.94780	HepG2	BOP1
RNASEK-C17orf49	ENSG00000161939.14	10.44590	0.00000	99999.99990	1.83600	1.30720	HepG2	GPKOW
RNASEK-C17orf49	ENSG00000161939.14	12.99950	1.89000	2.78190	2.40960	1.84860	HepG2	PUM1
RNASEK-C17orf49	ENSG00000161939.14	32.91350	7.92040	2.05490	3.44630	2.60300	HepG2	UCHL5
RNASEK-C17orf49	ENSG00000161939.14	34.31450	5.09340	2.75200	4.50080	3.78590	K562	AQR
RNASEK-C17orf49	ENSG00000161939.14	0.00000	10.64170	-99999.99999	3.31270	2.60950	K562	DDX47
RNASEK-C17orf49	ENSG00000161939.14	12.55420	0.00000	99999.99990	2.88390	2.01080	K562	FMR1
RNASEK-C17orf49	ENSG00000161939.14	17.63970	3.06660	2.52400	2.54250	1.86960	K562	G3BP2
RNASEK-C17orf49	ENSG00000161939.14	10.00810	0.00000	99999.99990	2.64190	1.73170	K562	KRR1
RNASEK-C17orf49	ENSG00000161939.14	28.78440	9.18190	1.64830	3.01550	2.16320	K562	PUF60
RNASEK-C17orf49	ENSG00000161939.14	11.82060	0.00000	99999.99990	3.30530	1.62360	K562	SBDS
RNASEK-C17orf49	ENSG00000161939.14	14.49540	0.98120	3.88480	3.06390	2.32290	K562	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNASEK-C17orf49 is not available on ENCORE database.

27 RBPs can affect the splicing of RNASEK-C17orf49 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.27100	0.00000	0.00000	included	K562	TAF15
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.09400	0.00445	0.06759	excluded	K562	SF3B4
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.12000	0.00018	0.00937	excluded	K562	PRPF8
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.09700	0.00008	0.02557	excluded	K562	PCBP1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.08700	0.00000	0.00000	included	HepG2	HNRNPK
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.10300	0.00056	0.01657	excluded	HepG2	HNRNPK
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.14300	0.00898	0.08376	excluded	HepG2	U2AF2
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.06900	0.00007	0.02253	included	K562	METAP2
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.07500	0.00080	0.03288	excluded	K562	FXR1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.09100	0.00080	0.03287	excluded	K562	FXR1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.13500	0.00003	0.00542	excluded	HepG2	DDX3X
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.06600	0.00006	0.01722	included	K562	DROSHA
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.10800	0.00041	0.02986	excluded	HepG2	NCBP2
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.13000	0.00008	0.00598	excluded	HepG2	MATR3
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6920228	6920333	6919813	6920004	6920575	6920723	-0.24700	0.00016	0.02540	excluded	HepG2	PCBP2
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.05600	0.00011	0.03327	included	K562	SBDS
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.18300	0.00041	0.01501	excluded	HepG2	SF3A3
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.15200	0.00004	0.03610	included	K562	TBRG4
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6920228	6920333	6919813	6920004	6920575	6920723	-0.24100	0.00004	0.00312	excluded	HepG2	PCBP1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6919092	6919194	6918380	6918475	6919813	6920004	-0.20100	0.00001	0.00119	excluded	HepG2	PCBP1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.09700	0.00001	0.00108	excluded	K562	TARDBP
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	0.13800	0.00054	0.02818	included	K562	HNRNPK
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.11300	0.00034	0.07506	excluded	K562	SERBP1
SE	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916835	6915953	6916080	6916984	6917061	-0.08100	0.00000	0.00004	excluded	K562	HNRNPC
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916874	6916637	6916835	6916984	6917061	0.15000	0.00000	0.00017	longer	K562	AQR
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6920268	6920483	6920268	6920333	6920575	6920723	0.19200	0.00000	0.00003	longer	K562	AQR
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.07500	0.00014	0.03662	shorter	HepG2	IGF2BP3
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.10300	0.00020	0.09610	shorter	K562	XRCC6
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.10600	0.00003	0.00896	shorter	HepG2	TIAL1
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.11500	0.00000	0.00001	shorter	HepG2	SRSF1
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.12400	0.00039	0.04253	shorter	K562	PRPF8
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	0.09600	0.00000	0.00230	longer	K562	GPKOW
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	-0.06600	0.00004	0.02005	shorter	HepG2	TBRG4
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	0.06300	0.00000	0.00026	longer	HepG2	DDX6
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916874	6916637	6916854	6916984	6917061	0.32300	0.00154	0.07394	longer	K562	SRSF1
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916637	6916854	6916637	6916835	6916984	6917061	-0.08000	0.00021	0.01553	shorter	K562	SRSF1
A5SS	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6915978	6916096	6915978	6916076	6916984	6917061	0.10400	0.00001	0.01552	longer	HepG2	SUB1
RI	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6917463	6918475	6917463	6918197	6918380	6918475	-0.09700	0.01123	0.09477	excluded	HepG2	HNRNPK
RI	RNASEK-C17orf49	ENSG00000161939.14	chr17	+	6916835	6917061	6916835	6916874	6916984	6917061	0.25200	0.00069	0.00485	included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNASEK-C17orf49

General Information

Functions

Localization

Domains (AlphaFold: RNASEK-C17orf49)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNASEK-C17orf49 is not avaliable on ENCORE database.

14 proteins are bound to RNASEK-C17orf49 RNA:

eCLIP assay for RNASEK-C17orf49 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNASEK-C17orf49 is not available on ENCORE database.

12 RBPs can affect the gene expression of RNASEK-C17orf49 :

The Knockdown/knockout RNA-Seq assay for RNASEK-C17orf49 is not available on ENCORE database.

27 RBPs can affect the splicing of RNASEK-C17orf49 :

The Knockdown/knockout RNA-Seq assay for RNASEK-C17orf49 is not avaliable on ENCORE database.