CDS2

General Information

Gene Name       : CDS2
Gene ID             : ENSG00000101290.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CDS2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDS2ENSG00000101290.1318.4917.9418.21ENCSR000AEF
HepG2CDS2ENSG00000101290.1345.8053.3349.56ENCSR985KAT
K562CDS2ENSG00000101290.1311.2012.7911.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDS2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDS2 RNA is bound by 28 proteins.  







eCLIP assay for CDS2 is not avaliable on ENCORE database.





28 proteins are bound to CDS2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2051717595171843+3'-UTR4.2016713.28998K562PUM2
chr2051749065174972+3'-UTR4.310286.88258HepG2RBFOX2
chr2051715595171650+3'-UTR3.759124.36355HepG2LIN28B
chr2051731115173131+3'-UTR5.5790613.03208K562LIN28B
chr2051729775173068+3'-UTR4.046989.81238HepG2UPF1
chr2051731315173152+3'-UTR6.0369519.55075K562LIN28B
chr2051719495172070+3'-UTR,polyA_site4.075626.83037K562KHSRP
chr2051717175171778+3'-UTR3.432367.22920HepG2IGF2BP1
chr2051710075171055+3'-UTR3.885063.55178K562PUM2
chr2051738025173847+3'-UTR3.310633.07801K562UPF1
chr2051709995171086+3'-UTR3.573963.24770HepG2TIA1
chr2051711395171245+3'-UTR3.452146.51800HepG2UPF1
chr2051729815173065+3'-UTR4.044038.94816HepG2RBFOX2
chr2051713405171401+3'-UTR4.239877.68824HepG2IGF2BP1
chr2051710635171112+3'-UTR4.753555.84664K562PUM2
chr2051731215173153+3'-UTR5.7156938.28846HepG2LIN28B
chr2051731525173192+3'-UTR4.8703413.41656K562LIN28B
chr2051731535173173+3'-UTR5.9631334.74152HepG2LIN28B
chr2051716705171775+3'-UTR3.849935.99887HepG2IGF2BP3
chr2051076145107735+5'-UTR5.43199400.00000HepG2DDX3X
chr2051595785159640+5'-UTR,CDS,intron-Proximal3.809833.31824HepG2TIAL1
chr2051630285163095+5'-UTR,CDS,intron-Proximal3.504348.99805HepG2BCLAF1
chr2051077355107793+5'-UTR,CDS3.7675628.19257HepG2DDX3X
chr2051595725159609+5'-UTR,CDS,intron-Proximal3.397215.45876HepG2BCLAF1
chr2051076705107791+5'-UTR,CDS6.2636713.74210K562DDX3X
chr2051664515166515+CDS,intron-Proximal3.183715.06115HepG2PRPF8
chr2051541945154306+CDS,intron-Distal,intron-Proximal3.245677.20038HepG2DDX3X
chr2051077905107835+CDS,intron-Proximal4.295273.59236HepG2AQR
chr2051637545163795+CDS,intron-Proximal3.044424.89002HepG2BCLAF1
chr2051542815154386+CDS,intron-Distal,intron-Proximal4.160703.49003K562PRPF8
chr2051573175157361+CDS,intron-Distal4.009334.93978HepG2BCLAF1
chr2051637045163754+CDS,intron-Proximal3.343377.33138HepG2BCLAF1
chr2051698255169877+CDS,intron-Proximal3.589835.34140HepG2PRPF8
chr2051655685165660+CDS,intron-Proximal3.348787.29769HepG2PRPF8
chr2051559085155927+CDS,intron-Distal,intron-Proximal3.459467.66871HepG2BCLAF1
chr2051178035117846+intron-Distal3.439703.39827HepG2MATR3
chr2051170705117112+intron-Distal4.357953.96879HepG2MATR3
chr2051257345125804+intron-Distal4.996794.22343HepG2XPO5
chr2051473655147410+intron-Distal4.184903.97018HepG2HNRNPM
chr2051175625117624+intron-Distal3.159013.33633HepG2MATR3
chr2051174595117492+intron-Distal3.733485.06177HepG2SUGP2
chr2051166835116766+intron-Distal3.029599.28863HepG2SUGP2
chr2051522575152317+intron-Distal3.341933.63437HepG2HNRNPM
chr2051168865116954+intron-Distal5.058227.15419HepG2MATR3
chr2051164645116545+intron-Distal3.3456413.88025HepG2SUGP2
chr2051597795159796+intron-Distal3.998624.04854HepG2HNRNPC
chr2051161845116235+intron-Distal4.332633.97018HepG2HNRNPM
chr2051524385152482+intron-Distal3.344863.66782HepG2HNRNPM
chr2051432595143432+intron-Distal3.882293.63869HepG2TAF15
chr2051160345116080+intron-Distal3.685058.74865HepG2SUGP2
chr2051476835147758+intron-Distal3.884185.37814HepG2HNRNPM
chr2051597965159846+intron-Distal3.219543.63916HepG2HNRNPC
chr2051664895166584+intron-Distal,intron-Proximal3.719255.31870HepG2RBM22
chr2051543285154376+intron-Distal,intron-Proximal3.161783.57000HepG2BUD13
chr2051083935108442+intron-Distal4.188013.84437HepG2PRPF4
chr2051079715108058+intron-Distal3.190417.59371HepG2EFTUD2
chr2051450875145162+intron-Distal5.6852910.96113HepG2RBFOX2
chr2051161835116198+intron-Distal3.444224.33009HepG2SUGP2
chr2051198645119993+intron-Distal4.305694.18168HepG2ILF3
chr2051350035135075+intron-Distal3.997285.95943HepG2HNRNPM
chr2051706135170658+intron-Distal,intron-Proximal4.363373.79000HepG2U2AF2
chr2051208885120943+intron-Distal3.272243.91859HepG2SUGP2
chr2051353035135356+intron-Distal4.045983.79098HepG2SUGP2
chr2051698535169939+intron-Distal,intron-Proximal3.724286.58258HepG2PCBP2
chr2051593085159372+intron-Distal,intron-Proximal4.264109.50052HepG2XPO5
chr2051169185116980+intron-Distal3.003776.57022HepG2SUGP2
chr2051523165152385+intron-Distal3.338973.84025HepG2SUGP2
chr2051163365116378+intron-Distal3.457986.96174HepG2SUGP2
chr2051174035117474+intron-Distal3.629836.91197HepG2MATR3
chr2051124705112560+intron-Distal4.351614.38204HepG2SFPQ
chr2051164215116464+intron-Distal3.412346.31916HepG2SUGP2
chr2051078055107841+intron-Proximal4.033405.64484HepG2PRPF8
chr2051703125170379+intron-Proximal4.275883.82050HepG2SF3B4
chr2051593705159454+intron-Proximal3.803513.31322HepG2SF3B4
chr2051698685169932+intron-Proximal3.786899.60060HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDS2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDS2 is not available on ENCORE database.

  • 82 RBPs can affect the levels of CDS2.  








The Knockdown/knockout RNA-Seq assay for CDS2 is not available on ENCORE database.





82 RBPs can affect the gene expression of CDS2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDS2ENSG00000101290.94049.759106948.57970-0.7789010.063309.11550HepG2AKAP1
CDS2ENSG00000101290.92736.533403344.97060-0.289602.745701.34860HepG2ATP5C1
CDS2ENSG00000101290.92817.340102119.446200.410503.482002.47810HepG2BCLAF1
CDS2ENSG00000101290.92741.953801981.623800.468405.412504.60990HepG2BOP1
CDS2ENSG00000101290.93433.886102777.336800.306002.856501.60450HepG2BUD13
CDS2ENSG00000101290.93766.218202980.556800.337404.177603.25410HepG2CALR
CDS2ENSG00000101290.94199.478105462.38570-0.379303.496502.63360HepG2CIRBP
CDS2ENSG00000101290.92321.006103332.37520-0.5218016.6919015.35300HepG2CKAP4
CDS2ENSG00000101290.92498.347104398.16080-0.815906.931405.72120HepG2CNOT7
CDS2ENSG00000101290.92214.285702892.84900-0.385605.942504.30390HepG2DDX1
CDS2ENSG00000101290.94448.553606656.52810-0.581406.855605.91300HepG2DDX3X
CDS2ENSG00000101290.93943.422402065.868100.932607.364705.81090HepG2DDX59
CDS2ENSG00000101290.94148.344005717.35500-0.462803.986903.25670HepG2DDX6
CDS2ENSG00000101290.93747.217302735.903100.453705.645904.27620HepG2DHX30
CDS2ENSG00000101290.92598.532503188.93860-0.295404.680003.84070HepG2DKC1
CDS2ENSG00000101290.92041.142402986.70790-0.549206.317004.97820HepG2EEF2
CDS2ENSG00000101290.92148.416305914.33270-1.4609025.2103023.29720HepG2EIF4B
CDS2ENSG00000101290.95870.115405141.193700.191202.581001.99690HepG2ETF1
CDS2ENSG00000101290.91918.200203642.98690-0.9254021.8991019.79160HepG2FUBP3
CDS2ENSG00000101290.93731.272006128.49620-0.7159010.431709.17330HepG2FXR1
CDS2ENSG00000101290.93759.074705685.64460-0.596906.668805.65650HepG2G3BP1
CDS2ENSG00000101290.91383.986702158.71510-0.641308.461406.93540HepG2GEMIN5
CDS2ENSG00000101290.92839.939704071.39020-0.519703.540302.27850HepG2GRSF1
CDS2ENSG00000101290.93768.534803185.429100.242401.963901.36870HepG2HNRNPC
CDS2ENSG00000101290.93375.540102907.462500.215302.602601.90670HepG2HNRNPF
CDS2ENSG00000101290.93609.896205755.90940-0.6731010.932009.62330HepG2HNRNPK
CDS2ENSG00000101290.92918.311501967.994700.568306.711605.77900HepG2HNRNPLL
CDS2ENSG00000101290.92019.598502582.60950-0.354804.002002.87780HepG2HNRNPM
CDS2ENSG00000101290.94655.475305779.53480-0.312002.404401.77020HepG2IGF2BP2
CDS2ENSG00000101290.92438.121603153.05330-0.371003.570302.27990HepG2LARP7
CDS2ENSG00000101290.93212.745606130.63090-0.9322016.2004014.67560HepG2MAGOH
CDS2ENSG00000101290.92012.608106165.11830-1.6151038.7216036.57240HepG2MATR3
CDS2ENSG00000101290.91682.851002537.46320-0.592503.943002.69190HepG2METAP2
CDS2ENSG00000101290.92873.149402007.180800.517403.329302.25880HepG2MTPAP
CDS2ENSG00000101290.93321.098102543.854000.384504.151902.66520HepG2NAA15
CDS2ENSG00000101290.93614.646206310.48360-0.8039011.8973010.62600HepG2NCBP2
CDS2ENSG00000101290.91938.653902851.07070-0.556406.863704.60760HepG2NIP7
CDS2ENSG00000101290.94822.250604175.585600.207602.307401.61110HepG2NOL12
CDS2ENSG00000101290.92311.920901745.030900.405703.998503.10430HepG2NSUN2
CDS2ENSG00000101290.92684.867904019.87480-0.582303.386602.39820HepG2PABPC1
CDS2ENSG00000101290.94332.011205620.55060-0.375703.120602.35620HepG2PABPC4
CDS2ENSG00000101290.92530.370703132.16340-0.307804.897603.81020HepG2PARN
CDS2ENSG00000101290.92109.217505650.12350-1.4216098.4816095.81460HepG2PCBP1
CDS2ENSG00000101290.93395.762202747.910400.305304.992503.98570HepG2PRPF4
CDS2ENSG00000101290.93718.480405749.21250-0.6287022.2238020.95720HepG2PTBP1
CDS2ENSG00000101290.94248.655203395.060000.323506.804905.91310HepG2PUS1
CDS2ENSG00000101290.95266.134604125.651300.352004.966203.85960HepG2RBM15
CDS2ENSG00000101290.92760.451603802.01280-0.461904.644803.33760HepG2RBM27
CDS2ENSG00000101290.92255.345103087.39660-0.453003.701502.47330HepG2RCC2
CDS2ENSG00000101290.94174.057206398.32110-0.6162021.6091020.37820HepG2NELFE
CDS2ENSG00000101290.94336.590605959.16740-0.4585012.6645011.49060HepG2RECQL
CDS2ENSG00000101290.91773.566102359.19480-0.411604.774903.99190HepG2RPS19
CDS2ENSG00000101290.93366.277404416.28230-0.391702.444801.69090HepG2RPS3A
CDS2ENSG00000101290.93543.816002818.000600.330506.998406.04140HepG2SAFB2
CDS2ENSG00000101290.92875.419504195.37510-0.545003.405601.68630HepG2SBDS
CDS2ENSG00000101290.91735.598402367.77130-0.448104.295003.13180HepG2SERBP1
CDS2ENSG00000101290.93015.114501947.904400.630209.208907.99450HepG2SF3B1
CDS2ENSG00000101290.94344.106805985.67130-0.4625012.7845011.65810HepG2SF3B4
CDS2ENSG00000101290.92682.301703286.24980-0.293006.342305.43190HepG2SMN1
CDS2ENSG00000101290.93934.569202167.393000.860108.082406.74800HepG2SNRNP70
CDS2ENSG00000101290.97107.076104853.421300.5502020.9681019.92470HepG2SRFBP1
CDS2ENSG00000101290.94341.402006247.74540-0.5252018.1874017.19890HepG2SRSF1
CDS2ENSG00000101290.94839.594303935.852800.298105.082604.27450HepG2SRSF5
CDS2ENSG00000101290.93415.798302856.513400.257903.526302.75410HepG2SRSF7
CDS2ENSG00000101290.94335.695505082.87400-0.229403.761303.13990HepG2SRSF9
CDS2ENSG00000101290.93749.427604476.00020-0.255504.604903.83920HepG2SUCLG1
CDS2ENSG00000101290.93061.416702527.456000.276402.384401.50670HepG2SUPT6H
CDS2ENSG00000101290.93988.692902387.349800.740409.666308.52940HepG2SUPV3L1
CDS2ENSG00000101290.93973.463105615.71830-0.4991011.4665010.44840HepG2TAF15
CDS2ENSG00000101290.93071.107001918.285000.6788010.393809.12370HepG2TARDBP
CDS2ENSG00000101290.94321.944603074.717700.491108.655107.85990HepG2TIAL1
CDS2ENSG00000101290.92361.522503102.26460-0.393608.009307.12860HepG2TRIM56
CDS2ENSG00000101290.94547.216603202.100500.505905.959905.05460HepG2U2AF1
CDS2ENSG00000101290.91020.654301410.30280-0.466503.827802.93590HepG2UCHL5
CDS2ENSG00000101290.92536.057403544.71430-0.4831012.3028011.17810HepG2UTP3
CDS2ENSG00000101290.92465.686103705.84830-0.587804.528903.18710HepG2XRCC6
CDS2ENSG00000101290.95760.808604037.977400.5125021.5672020.39610HepG2ZNF622
CDS2ENSG00000101290.9598.45050830.77720-0.473203.831602.31340K562CIRBP
CDS2ENSG00000101290.9430.73900638.65890-0.568203.321701.91200K562EEF2
CDS2ENSG00000101290.9530.22550685.34700-0.370202.474701.69890K562EIF4A3
CDS2ENSG00000101290.9430.08070617.17930-0.521105.162403.51390K562EIF4B
CDS2ENSG00000101290.9536.33260712.72970-0.410203.666402.98500K562FXR1
CDS2ENSG00000101290.9589.11940774.17750-0.394102.459001.30300K562HNRNPK
CDS2ENSG00000101290.9439.23330600.49270-0.451202.672901.93580K562PRPF8
CDS2ENSG00000101290.91136.83600916.074000.311402.085601.60170K562PUS1
CDS2ENSG00000101290.9569.06120758.92270-0.415403.050802.16240K562RBM22
CDS2ENSG00000101290.9370.47490533.35990-0.525703.807802.64150K562RCC2
CDS2ENSG00000101290.91222.54830958.481800.351003.780002.83520K562SF3A3
CDS2ENSG00000101290.9546.03110711.24840-0.381403.033802.13800K562SF3B4
CDS2ENSG00000101290.91563.280301232.635100.342703.154201.76370K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDS2 is not available on ENCORE database.





1 RBPs can affect the splicing of CDS2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDS2ENSG00000101290.9chr20+510879551093965107654510779551541685154305-0.060000.000260.00645excludedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDS2 is not avaliable on ENCORE database.