LMCD1

General Information

Gene Name       : LMCD1
Gene ID             : ENSG00000071282.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LMCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LMCD1ENSG00000071282.110.801.130.96ENCSR000AEF
HepG2LMCD1ENSG00000071282.1111.657.469.55ENCSR985KAT
K562LMCD1ENSG00000071282.110.070.000.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LMCD1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on LMCD1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for LMCD1 is not avaliable on ENCORE database.






NO known proteins are bound to LMCD1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for LMCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LMCD1 is not available on ENCORE database.

  • 76 RBPs can affect the levels of LMCD1.  








The Knockdown/knockout RNA-Seq assay for LMCD1 is not available on ENCORE database.





76 RBPs can affect the gene expression of LMCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LMCD1ENSG00000071282.7173.37070108.319400.678502.576401.53880HepG2AATF
LMCD1ENSG00000071282.7528.26670121.912402.1153041.2925039.62140HepG2ACO1
LMCD1ENSG00000071282.7345.55130141.830801.284609.053508.15330HepG2AKAP1
LMCD1ENSG00000071282.7207.45780122.507600.759804.332603.38720HepG2AKAP8L
LMCD1ENSG00000071282.755.75680111.48620-0.999603.221702.39010HepG2CIRBP
LMCD1ENSG00000071282.7122.77540247.86570-1.013504.827403.81190HepG2CNOT7
LMCD1ENSG00000071282.790.08340143.15720-0.668302.581301.60120HepG2YBX3
LMCD1ENSG00000071282.7490.20310175.586001.4811015.1190013.85370HepG2CELF1
LMCD1ENSG00000071282.7115.20280188.75790-0.712403.574802.75170HepG2DAZAP1
LMCD1ENSG00000071282.758.54840112.76390-0.945604.135403.13870HepG2DDX19B
LMCD1ENSG00000071282.767.24870116.97280-0.798602.703901.80220HepG2DDX24
LMCD1ENSG00000071282.7162.95270255.48770-0.648803.297101.88650HepG2DDX47
LMCD1ENSG00000071282.7370.64690135.761701.4489011.423509.98010HepG2DDX55
LMCD1ENSG00000071282.7509.15930116.746202.1246027.5968025.95260HepG2DDX6
LMCD1ENSG00000071282.774.90620135.57330-0.855903.349402.27560HepG2DHX30
LMCD1ENSG00000071282.759.09260116.64410-0.981103.718202.95540HepG2DKC1
LMCD1ENSG00000071282.7269.94550112.173201.266808.712507.69840HepG2EIF2S1
LMCD1ENSG00000071282.7197.5825095.387101.050505.343604.11710HepG2EIF3D
LMCD1ENSG00000071282.750.05500123.93660-1.308005.385604.49570HepG2EIF4A3
LMCD1ENSG00000071282.7103.51930178.41500-0.785303.209302.33530HepG2EIF4G2
LMCD1ENSG00000071282.7300.09390119.154101.3325010.773609.16090HepG2EWSR1
LMCD1ENSG00000071282.7113.13550216.46260-0.936104.000001.55030HepG2FASTKD1
LMCD1ENSG00000071282.7312.01810104.579301.5769010.315708.95940HepG2FIP1L1
LMCD1ENSG00000071282.738.2745090.65360-1.244002.445401.49560HepG2FTO
LMCD1ENSG00000071282.738.9052075.15570-0.949902.397501.66490HepG2FUBP3
LMCD1ENSG00000071282.7222.63140137.458600.695602.836601.70960HepG2FUS
LMCD1ENSG00000071282.7214.12470125.131500.774903.437002.67080HepG2FXR1
LMCD1ENSG00000071282.754.67780123.24230-1.172504.423203.28570HepG2G3BP2
LMCD1ENSG00000071282.773.75640141.90680-0.944103.610302.88540HepG2HNRNPA1
LMCD1ENSG00000071282.783.34680157.84970-0.921403.630002.84390HepG2HNRNPC
LMCD1ENSG00000071282.768.06720178.74680-1.392909.348608.12720HepG2HNRNPF
LMCD1ENSG00000071282.734.5153097.90680-1.504205.027104.20430HepG2HNRNPLL
LMCD1ENSG00000071282.754.36260176.01620-1.6950011.5197010.14090HepG2IGF2BP1
LMCD1ENSG00000071282.768.84700125.90960-0.870902.769801.52190HepG2KRR1
LMCD1ENSG00000071282.771.18980125.17550-0.814202.671502.02670HepG2MAGOH
LMCD1ENSG00000071282.739.3748099.84440-1.342403.559802.45130HepG2MTPAP
LMCD1ENSG00000071282.7302.83300187.174100.694005.058904.03080HepG2NOL12
LMCD1ENSG00000071282.728.2881086.81050-1.617704.710203.74270HepG2NSUN2
LMCD1ENSG00000071282.7216.57410155.205000.480602.151601.39720HepG2PARN
LMCD1ENSG00000071282.7177.38120113.934100.638602.921202.30070HepG2PCBP1
LMCD1ENSG00000071282.7191.81440104.731200.872903.731902.81070HepG2PRPF8
LMCD1ENSG00000071282.7175.88280115.939600.601102.703002.16100HepG2PTBP1
LMCD1ENSG00000071282.7259.39630189.695300.451402.631302.04970HepG2PUM1
LMCD1ENSG00000071282.7628.48750125.489802.3242025.0072023.09620HepG2RAVER1
LMCD1ENSG00000071282.7305.45910119.292001.3564012.7369011.10410HepG2RBM15
LMCD1ENSG00000071282.7253.06520129.023400.971804.659303.99120HepG2NELFE
LMCD1ENSG00000071282.7100.01480192.52880-0.944904.669303.81320HepG2RPLP0
LMCD1ENSG00000071282.742.49870123.38440-1.537704.601503.39330HepG2RPS10
LMCD1ENSG00000071282.7194.8749092.829001.069805.817904.96500HepG2RPS19
LMCD1ENSG00000071282.784.31860249.10380-1.562808.241606.88350HepG2RPS3A
LMCD1ENSG00000071282.7253.51610151.360200.744003.485202.27550HepG2RPS5
LMCD1ENSG00000071282.748.12540139.63970-1.536809.016007.95820HepG2SAFB2
LMCD1ENSG00000071282.7116.96460234.56880-1.003904.754603.04070HepG2SART3
LMCD1ENSG00000071282.7132.75280236.51930-0.833203.235401.55430HepG2SBDS
LMCD1ENSG00000071282.7124.8632045.899601.443703.062201.52110HepG2SFPQ
LMCD1ENSG00000071282.7119.55240171.35800-0.519401.913501.31180HepG2SLBP
LMCD1ENSG00000071282.7260.47050162.838900.677604.497003.71220HepG2SMN1
LMCD1ENSG00000071282.7317.69180173.909500.869206.815006.12590HepG2SRFBP1
LMCD1ENSG00000071282.7198.86900125.984600.658503.084302.59220HepG2SRSF1
LMCD1ENSG00000071282.7123.77310176.44120-0.511501.856801.32980HepG2SRSF5
LMCD1ENSG00000071282.774.17260175.60700-1.243407.969206.88890HepG2SRSF7
LMCD1ENSG00000071282.7179.64500102.499900.809404.508003.83560HepG2SRSF9
LMCD1ENSG00000071282.755.61310150.98440-1.440908.804707.99030HepG2SSB
LMCD1ENSG00000071282.7339.31880216.764500.646403.475702.22930HepG2STIP1
LMCD1ENSG00000071282.7296.39550200.648900.562803.800103.09210HepG2SUCLG1
LMCD1ENSG00000071282.7870.63400135.149302.6874049.3903047.24010HepG2SUPV3L1
LMCD1ENSG00000071282.737.6897095.41930-1.340104.374503.49030HepG2TARDBP
LMCD1ENSG00000071282.750.10120123.31260-1.299404.053502.77930HepG2TBRG4
LMCD1ENSG00000071282.7104.16110152.34870-0.548601.976101.53870HepG2TIAL1
LMCD1ENSG00000071282.7247.61610153.729200.687604.561803.87440HepG2TRIM56
LMCD1ENSG00000071282.7111.29710174.58920-0.649502.384901.57790HepG2TUFM
LMCD1ENSG00000071282.7163.5189049.105801.735404.622103.32730HepG2U2AF2
LMCD1ENSG00000071282.758.57210123.75690-1.079203.217702.13330HepG2UPF2
LMCD1ENSG00000071282.7161.3392048.619901.730405.164304.38900HepG2UTP3
LMCD1ENSG00000071282.7125.36460223.13450-0.831802.956801.81710HepG2XPO5
LMCD1ENSG00000071282.780.42770133.03960-0.726102.102901.46280HepG2XRN2
LMCD1ENSG00000071282.79.651900.0000099999.999902.404701.70360K562PRPF8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LMCD1 is not available on ENCORE database.





1 RBPs can affect the splicing of LMCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELMCD1ENSG00000071282.7chr3+8578870857912685744228574511859025385905890.123000.007240.07092includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LMCD1 is not avaliable on ENCORE database.