R3HDM4

General Information

Gene Name : R3HDM4
Gene ID : ENSG00000198858.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: R3HDM4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	R3HDM4	ENSG00000198858.9	10.33	18.54	14.43	ENCSR000AEF
HepG2	R3HDM4	ENSG00000198858.9	29.99	17.45	23.72	ENCSR985KAT
K562	R3HDM4	ENSG00000198858.9	78.71	58.93	68.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for R3HDM4 is not avaliable on ENCORE database.

Proteins bound to RNA

R3HDM4 RNA is bound by 39 proteins.

CanvasJS.com

eCLIP assay for R3HDM4 is not avaliable on ENCORE database.

39 proteins are bound to R3HDM4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	896856	896909	-	3'-UTR,intron-Distal	5.74395	400.00000	K562	PABPC4
chr19	896636	896692	-	3'-UTR,intron-Distal	4.27562	400.00000	K562	PABPC4
chr19	896705	896778	-	3'-UTR,intron-Distal	4.72167	83.17593	K562	PABPC4
chr19	896910	896949	-	3'-UTR,intron-Distal	4.80586	77.01542	K562	PABPC4
chr19	896862	896917	-	3'-UTR,intron-Distal	3.73109	71.23862	K562	PUM2
chr19	897040	897064	-	3'-UTR,intron-Distal	4.15234	54.95912	K562	PUM2
chr19	896635	896680	-	3'-UTR,intron-Distal	4.29284	50.40918	K562	DDX55
chr19	912423	912504	-	intron-Distal	6.78732	46.73523	HepG2	DDX59
chr19	896856	896912	-	3'-UTR,intron-Distal	3.69714	44.66797	K562	UPF1
chr19	896629	896695	-	3'-UTR,intron-Distal	3.23140	43.86249	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 209 entries

eCLIP assay for R3HDM4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for R3HDM4 is not available on ENCORE database.
115 RBPs can affect the levels of R3HDM4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for R3HDM4 is not available on ENCORE database.

115 RBPs can affect the gene expression of R3HDM4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
R3HDM4	ENSG00000198858.5	1845.18550	648.58480	1.50830	22.18440	20.66090	HepG2	DDX6
R3HDM4	ENSG00000198858.5	3086.59080	1551.87920	0.99190	21.39890	18.79310	K562	FIP1L1
R3HDM4	ENSG00000198858.5	3838.97060	2103.86820	0.86760	16.88370	15.03840	K562	HSPD1
R3HDM4	ENSG00000198858.5	1580.75090	983.97660	0.68380	15.51060	14.57780	HepG2	SRFBP1
R3HDM4	ENSG00000198858.5	1029.25370	631.88100	0.70380	15.13920	13.98090	HepG2	PUM1
R3HDM4	ENSG00000198858.5	728.78780	384.55080	0.92220	14.73070	13.21620	HepG2	DNAJC21
R3HDM4	ENSG00000198858.5	1047.64790	653.23300	0.68140	14.16910	13.17180	HepG2	ZNF622
R3HDM4	ENSG00000198858.5	1962.74120	1182.05900	0.73150	13.30550	11.90310	K562	PTBP1
R3HDM4	ENSG00000198858.5	725.50730	420.54950	0.78660	12.63330	11.55500	HepG2	TRIM56
R3HDM4	ENSG00000198858.5	238.28310	621.39010	-1.38280	12.99700	11.21760	K562	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 135 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for R3HDM4 is not available on ENCORE database.

37 RBPs can affect the splicing of R3HDM4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	R3HDM4	ENSG00000198858.5	chr19	-	902241	902434	901975	902130	913086	913204	-0.64100	0.00000	excluded	K562	SRSF1
SE	R3HDM4	ENSG00000198858.5	chr19	-	901421	901546	900819	900952	901975	902130	-0.29300	0.00000	excluded	K562	SF3B4
SE	R3HDM4	ENSG00000198858.5	chr19	-	902241	902434	901975	902130	913086	913204	-0.46000	0.00003	excluded	K562	TIA1
SE	R3HDM4	ENSG00000198858.5	chr19	-	901421	901546	900819	900952	901975	902130	-0.30200	0.00000	excluded	HepG2	U2AF1
SE	R3HDM4	ENSG00000198858.5	chr19	-	901421	901546	900822	900952	901975	902130	-0.10200	0.00000	excluded	K562	AKAP8L
SE	R3HDM4	ENSG00000198858.5	chr19	-	902241	902434	901975	902130	913086	913204	0.36200	0.00000	included	K562	XRCC6
SE	R3HDM4	ENSG00000198858.5	chr19	-	902241	902434	901975	902130	913086	913204	-0.44100	0.01627	excluded	K562	NONO
SE	R3HDM4	ENSG00000198858.5	chr19	-	901421	901546	900819	900952	901975	902130	-0.13500	0.00038	excluded	K562	FXR1
SE	R3HDM4	ENSG00000198858.5	chr19	-	901421	901546	900822	900952	901975	902130	-0.10300	0.00000	excluded	K562	PUS1
SE	R3HDM4	ENSG00000198858.5	chr19	-	902241	902434	901975	902130	913086	913204	-0.45400	0.00002	excluded	K562	UCHL5

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

R3HDM4

General Information

Functions

Localization

Domains (AlphaFold: R3HDM4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for R3HDM4 is not avaliable on ENCORE database.

39 proteins are bound to R3HDM4 RNA:

eCLIP assay for R3HDM4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for R3HDM4 is not available on ENCORE database.

115 RBPs can affect the gene expression of R3HDM4 :

The Knockdown/knockout RNA-Seq assay for R3HDM4 is not available on ENCORE database.

37 RBPs can affect the splicing of R3HDM4 :

The Knockdown/knockout RNA-Seq assay for R3HDM4 is not avaliable on ENCORE database.