SMAP1

General Information

Gene Name       : SMAP1
Gene ID             : ENSG00000112305.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMAP1ENSG00000112305.1424.9923.0824.03ENCSR000AEF
HepG2SMAP1ENSG00000112305.1410.4313.5612.00ENCSR985KAT
K562SMAP1ENSG00000112305.1415.3117.7316.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMAP1 RNA is bound by 12 proteins.  







eCLIP assay for SMAP1 is not avaliable on ENCORE database.





12 proteins are bound to SMAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr67157012171570182+3'-UTR3.976003.98716K562IGF2BP1
chr67157013571570195+3'-UTR4.066963.98488K562TIA1
chr67148307771483134+3'-UTR,CDS,intron-Proximal4.241303.89826HepG2BCLAF1
chr67157047471570529+3'-UTR3.356323.62890K562FAM120A
chr67156995271570064+3'-UTR,CDS3.260983.34065K562IGF2BP1
chr67157066471570724+3'-UTR3.143324.62974K562PUM2
chr67137761971377707+5'-UTR5.030338.90110K562YBX3
chr67156231371562367+CDS3.719593.43253K562YBX3
chr67137779071377840+CDS3.939333.66655K562YBX3
chr67156765871567724+CDS3.273044.08171K562YBX3
chr67144213571442215+CDS,intron-Proximal3.107135.51805K562YBX3
chr67150836971508449+CDS,intron-Proximal3.620823.95937K562UCHL5
chr67150836971508441+CDS,intron-Proximal3.387073.36945K562ZNF622
chr67146470571464751+CDS3.898813.83925K562YBX3
chr67155288171552970+intron-Distal4.324254.51735HepG2QKI
chr67144641571446483+intron-Distal4.600604.40618K562PTBP1
chr67144644871446507+intron-Distal4.130663.74583HepG2PTBP1
chr67141628171416386+intron-Distal4.123363.24603K562KHSRP
chr67156479371564879+intron-Distal4.402703.71677HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMAP1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of SMAP1.  








The Knockdown/knockout RNA-Seq assay for SMAP1 is not available on ENCORE database.





68 RBPs can affect the gene expression of SMAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMAP1ENSG00000112305.10355.88090561.45170-0.657805.264403.95480HepG2ADAR
SMAP1ENSG00000112305.10642.226101085.41460-0.757106.822806.02900HepG2AKAP1
SMAP1ENSG00000112305.10666.88150898.05210-0.429402.912302.10840HepG2ASCC1
SMAP1ENSG00000112305.101015.89500824.033900.301902.885202.18660HepG2AUH
SMAP1ENSG00000112305.10327.30000582.29150-0.831107.066506.16140HepG2BOP1
SMAP1ENSG00000112305.10724.473601009.79610-0.479102.868601.87440HepG2CCAR1
SMAP1ENSG00000112305.10401.86770675.82230-0.749904.484603.50710HepG2CNOT7
SMAP1ENSG00000112305.10165.84340306.54080-0.886306.212104.70060HepG2CSTF2
SMAP1ENSG00000112305.10395.61000560.31450-0.502203.390802.68210HepG2DNAJC2
SMAP1ENSG00000112305.10456.74140609.39170-0.416002.281901.44290HepG2EEF2
SMAP1ENSG00000112305.10353.35980508.06750-0.523903.258102.05710HepG2EFTUD2
SMAP1ENSG00000112305.10328.05730494.71950-0.592703.666702.63410HepG2EIF3D
SMAP1ENSG00000112305.10382.64140948.70420-1.3100017.9696016.35120HepG2EIF4A3
SMAP1ENSG00000112305.10589.07740923.86990-0.649204.324203.47650HepG2EIF4B
SMAP1ENSG00000112305.10681.16620946.08860-0.474005.477904.68030HepG2ETF1
SMAP1ENSG00000112305.10715.19660957.47740-0.420902.892402.18460HepG2FXR1
SMAP1ENSG00000112305.10530.92400888.05620-0.742106.905205.87350HepG2G3BP1
SMAP1ENSG00000112305.10361.54020606.05200-0.745305.286704.41990HepG2GPKOW
SMAP1ENSG00000112305.10424.74250570.80740-0.426402.707402.06750HepG2HNRNPA1
SMAP1ENSG00000112305.10433.66890634.88960-0.549904.142703.30680HepG2HNRNPC
SMAP1ENSG00000112305.10401.02160585.39130-0.545703.053101.46470HepG2HNRNPD
SMAP1ENSG00000112305.10395.31270630.69420-0.673905.726304.87890HepG2HNRNPU
SMAP1ENSG00000112305.10619.64210902.63830-0.542704.350203.52070HepG2IGF2BP2
SMAP1ENSG00000112305.10656.19330907.99610-0.468602.713801.72220HepG2KHSRP
SMAP1ENSG00000112305.10817.815201066.18510-0.382602.043301.33860HepG2LARP4
SMAP1ENSG00000112305.10406.55460555.15220-0.449403.034201.76200HepG2LIN28B
SMAP1ENSG00000112305.10496.11970957.81290-0.9491011.145009.85850HepG2MAGOH
SMAP1ENSG00000112305.10707.57610963.12900-0.444802.820202.18380HepG2MATR3
SMAP1ENSG00000112305.10601.18760985.77980-0.713506.649805.68750HepG2NCBP2
SMAP1ENSG00000112305.10480.33910765.44100-0.672204.428702.61690HepG2NKRF
SMAP1ENSG00000112305.10638.03160857.48300-0.426504.206703.26610HepG2NOL12
SMAP1ENSG00000112305.10562.50910926.88440-0.7205012.0439010.92070HepG2PCBP1
SMAP1ENSG00000112305.10502.33780697.94230-0.474402.357801.39580HepG2PCBP2
SMAP1ENSG00000112305.10194.86110376.38710-0.949806.983005.76850HepG2PRPF8
SMAP1ENSG00000112305.10652.67540943.14650-0.531107.157306.35750HepG2PTBP1
SMAP1ENSG00000112305.10556.42830868.87390-0.643006.856706.00910HepG2PUM1
SMAP1ENSG00000112305.10493.26960662.65020-0.425904.314203.57630HepG2PUS1
SMAP1ENSG00000112305.10776.291601021.43610-0.395903.766003.05400HepG2QKI
SMAP1ENSG00000112305.101149.97230871.195500.400402.998902.10820HepG2RBM15
SMAP1ENSG00000112305.10441.65360637.70210-0.530003.890202.69960HepG2RBM27
SMAP1ENSG00000112305.10248.02720517.84370-1.062004.522003.16210HepG2RCC2
SMAP1ENSG00000112305.10861.966801049.62570-0.284202.563202.03950HepG2NELFE
SMAP1ENSG00000112305.10661.49920977.59420-0.563507.819906.86180HepG2RECQL
SMAP1ENSG00000112305.10359.73390481.35720-0.420202.435601.85480HepG2RPS19
SMAP1ENSG00000112305.10415.39630588.10470-0.501603.545602.64160HepG2RPS2
SMAP1ENSG00000112305.10415.20300678.57930-0.708704.842003.78190HepG2RPS3A
SMAP1ENSG00000112305.10462.02690600.35490-0.377802.384701.39200HepG2RPS5
SMAP1ENSG00000112305.10683.05170981.92480-0.523606.938306.06890HepG2SF3B4
SMAP1ENSG00000112305.10485.24240655.03890-0.432904.152203.39210HepG2SMN1
SMAP1ENSG00000112305.10636.76490893.13630-0.488105.907505.25200HepG2SRFBP1
SMAP1ENSG00000112305.10803.701301024.92200-0.350803.747203.21810HepG2SRSF1
SMAP1ENSG00000112305.10559.26040808.14320-0.531106.699105.78230HepG2SRSF5
SMAP1ENSG00000112305.10647.91620833.83300-0.364003.807903.18140HepG2SRSF9
SMAP1ENSG00000112305.10682.98930919.10580-0.428405.441904.62330HepG2SUCLG1
SMAP1ENSG00000112305.10723.18850921.25400-0.349203.169202.57460HepG2TAF15
SMAP1ENSG00000112305.10414.83870612.94260-0.563205.282204.63700HepG2TIAL1
SMAP1ENSG00000112305.10263.45540393.13110-0.577503.039101.40750HepG2TROVE2
SMAP1ENSG00000112305.10569.04420799.62300-0.490804.441803.30390HepG2TUFM
SMAP1ENSG00000112305.10580.77250846.36290-0.543303.532202.58150HepG2UBE2L3
SMAP1ENSG00000112305.10466.85250735.20040-0.6552010.194609.31090HepG2ZNF622
SMAP1ENSG00000112305.10318.34980438.98100-0.463502.911801.82750K562CSTF2
SMAP1ENSG00000112305.101553.396301097.588600.501008.542207.47800K562DDX47
SMAP1ENSG00000112305.101054.883401399.32990-0.407704.464903.28410K562EIF4G2
SMAP1ENSG00000112305.101036.32910820.142900.337402.421201.62810K562FIP1L1
SMAP1ENSG00000112305.101498.929201111.904800.430803.839902.90590K562HSPD1
SMAP1ENSG00000112305.10569.45280798.84200-0.488304.238103.19290K562MAGOH
SMAP1ENSG00000112305.101329.948801591.18990-0.258702.202701.34410K562PUM2
SMAP1ENSG00000112305.101477.009601124.798300.392903.502602.90270K562PUS1
SMAP1ENSG00000112305.10544.55640744.31030-0.450803.461702.51600K562RBM22
SMAP1ENSG00000112305.10290.56120505.29880-0.798306.942305.36970K562RCC2
SMAP1ENSG00000112305.10856.91300504.574200.764006.556505.28890K562RPS19
SMAP1ENSG00000112305.10722.83810871.08910-0.269102.330201.46250K562SRPK2
SMAP1ENSG00000112305.10558.53920770.05260-0.463303.413102.62350K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMAP1 is not available on ENCORE database.





6 RBPs can affect the splicing of SMAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.395000.000040.00642includedHepG2SRSF7
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.776000.000000.00000includedHepG2PTBP1
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.375000.000000.00002includedHepG2MATR3
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.251000.000010.00404includedK562SBDS
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.279000.000040.00159includedHepG2SRSF1
SESMAP1ENSG00000112305.10chr6+715083597150844071483052714831287154664371546731-0.129000.004140.09685excludedK562UTP18
SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.903000.000000.00000includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMAP1 is not avaliable on ENCORE database.