C4orf29

General Information

Gene Name       : C4orf29
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4orf29)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4orf29 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4orf29 RNA is bound by 13 proteins.  







eCLIP assay for C4orf29 is not avaliable on ENCORE database.





13 proteins are bound to C4orf29 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4128960609128960686+3'-UTR3.991285.10007K562FAM120A
chr4128960700128960733+3'-UTR5.087659.61540K562KHSRP
chr4128949626128949697+3'-UTR,CDS,intron-Proximal4.776505.68196HepG2BCLAF1
chr4128942289128942361+3'-UTR,CDS,intron-Distal,intron-Proximal3.602543.68471HepG2BCLAF1
chr4128938502128938583+3'-UTR,CDS,intron-Proximal4.977615.47569HepG2U2AF2
chr4128930698128930783+3'-UTR,intron-Distal,intron-Proximal3.094594.34780K562ZNF622
chr4128957554128957684+3'-UTR3.302667.37538K562UPF1
chr4128960733128960818+3'-UTR4.5156412.68814K562KHSRP
chr4128957969128958014+3'-UTR4.310634.22051K562UPF1
chr4128905493128905575+5'-UTR,CDS,intron-Proximal3.955853.79347HepG2GRWD1
chr4128886637128886772+5'-UTR,intron-Proximal3.697518.12220HepG2NCBP2
chr4128905493128905580+5'-UTR,CDS,intron-Proximal3.070615.00751HepG2BCLAF1
chr4128905518128905574+5'-UTR,CDS4.302114.10264K562ZNF622
chr4128886594128886762+5'-UTR,intron-Proximal3.532707.38616K562DDX3X
chr4128932809128932953+CDS,intron-Distal,intron-Proximal5.1160713.40185K562AQR
chr4128932801128932872+CDS,intron-Distal,intron-Proximal4.750395.13577HepG2U2AF2
chr4128931160128931241+intron-Distal3.365056.59733K562KHSRP
chr4128930804128930882+intron-Distal,intron-Proximal3.927823.66668K562KHSRP
chr4128950042128950153+intron-Distal,intron-Proximal3.779033.42844K562KHSRP
chr4128932954128933014+intron-Distal,intron-Proximal3.062553.28806K562KHSRP
chr4128931051128931160+intron-Distal3.511197.42482K562KHSRP
chr4128931348128931407+intron-Distal3.562554.08064K562KHSRP
chr4128938398128938468+intron-Distal,intron-Proximal4.051783.66668K562KHSRP
chr4128918912128919038+intron-Distal3.596074.78196HepG2PTBP1
chr4128935639128935712+intron-Distal3.954684.07352K562KHSRP
chr4128918970128919032+intron-Distal4.051645.16181K562PTBP1
chr4128922296128922345+intron-Distal4.167983.89080K562EXOSC5
chr4128950486128950589+intron-Distal3.893154.48570K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4orf29 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4orf29 is not available on ENCORE database.

  • 60 RBPs can affect the levels of C4orf29.  








The Knockdown/knockout RNA-Seq assay for C4orf29 is not available on ENCORE database.





60 RBPs can affect the gene expression of C4orf29 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4orf29ENSG00000164074.10501.76710359.993300.478903.441602.59380HepG2CALR
C4orf29ENSG00000164074.10245.01550342.82950-0.484602.299301.66450HepG2CPSF6
C4orf29ENSG00000164074.10337.80630445.25990-0.398502.799902.15370HepG2CELF1
C4orf29ENSG00000164074.10382.33000274.255600.479202.739701.83270HepG2DDX24
C4orf29ENSG00000164074.10469.52830342.701700.454203.380402.64150HepG2DKC1
C4orf29ENSG00000164074.10201.54690287.85830-0.514203.299702.59890HepG2DNAJC2
C4orf29ENSG00000164074.10312.64670415.02420-0.408701.893901.39250HepG2EIF2S1
C4orf29ENSG00000164074.10597.22370452.481200.400302.270001.52640HepG2EIF4G2
C4orf29ENSG00000164074.10763.00330514.088100.569606.853605.97730HepG2ETF1
C4orf29ENSG00000164074.10344.11810462.67790-0.427102.162801.54750HepG2FXR1
C4orf29ENSG00000164074.10302.64420429.26570-0.504202.647501.99580HepG2G3BP1
C4orf29ENSG00000164074.10328.08790434.52070-0.405301.961601.36670HepG2HNRNPK
C4orf29ENSG00000164074.10352.53340436.20350-0.307202.100201.50270HepG2HNRNPL
C4orf29ENSG00000164074.10220.74500323.96620-0.553503.909803.20060HepG2HNRNPU
C4orf29ENSG00000164074.10568.60500396.061100.521603.941403.14750HepG2RBM25
C4orf29ENSG00000164074.10753.93850485.306300.635508.577507.82870HepG2SRFBP1
C4orf29ENSG00000164074.10338.99220447.46680-0.400502.915502.27350HepG2SRSF5
C4orf29ENSG00000164074.10670.60560421.356200.670308.835308.01980HepG2SSB
C4orf29ENSG00000164074.10419.26940508.91680-0.279601.875701.34510HepG2SUCLG1
C4orf29ENSG00000164074.10105.17860223.83090-1.089605.113903.82050HepG2TFIP11
C4orf29ENSG00000164074.10192.52890317.60910-0.722205.828605.06410HepG2TRIM56
C4orf29ENSG00000164074.10378.82760473.27660-0.321101.907801.39110HepG2UTP3
C4orf29ENSG00000164074.10498.39130317.449900.650606.919905.93600HepG2ZC3H8
C4orf29ENSG00000164074.10628.69700919.98610-0.549207.217706.36440K562AGGF1
C4orf29ENSG00000164074.10762.584401010.87300-0.406603.425402.30600K562AKAP8
C4orf29ENSG00000164074.10757.70180957.27430-0.337302.418301.80710K562AKAP8L
C4orf29ENSG00000164074.10713.899901090.73530-0.611506.453705.61870K562AQR
C4orf29ENSG00000164074.10478.15670619.74470-0.374202.104701.35000K562BOP1
C4orf29ENSG00000164074.10911.025701121.57410-0.300002.698301.60600K562CPEB4
C4orf29ENSG00000164074.10397.15090658.95590-0.730507.781606.45740K562CPSF6
C4orf29ENSG00000164074.10384.29530502.43010-0.386702.508001.50850K562CSTF2
C4orf29ENSG00000164074.10379.63400621.91600-0.712105.998104.61190K562EFTUD2
C4orf29ENSG00000164074.10632.83490839.22520-0.407203.135402.37650K562EIF2S2
C4orf29ENSG00000164074.10467.21630597.33350-0.354402.619701.50900K562EIF4B
C4orf29ENSG00000164074.10434.09010578.98680-0.415502.837401.52830K562EWSR1
C4orf29ENSG00000164074.10531.45060860.61410-0.695407.381505.93370K562FIP1L1
C4orf29ENSG00000164074.10935.05030660.937500.500403.092102.33690K562G3BP2
C4orf29ENSG00000164074.10442.19000629.13230-0.508703.836502.90820K562GPKOW
C4orf29ENSG00000164074.10784.333301118.46560-0.512003.953903.05290K562GRSF1
C4orf29ENSG00000164074.10505.12770840.76530-0.7351010.400908.69270K562HNRNPU
C4orf29ENSG00000164074.10515.72440840.29230-0.704305.652303.96490K562IGF2BP2
C4orf29ENSG00000164074.10649.19690854.86370-0.397003.059301.79100K562IGF2BP3
C4orf29ENSG00000164074.10701.20070881.81360-0.330602.174501.36630K562MATR3
C4orf29ENSG00000164074.10915.146301138.11740-0.314602.474901.62310K562MBNL1
C4orf29ENSG00000164074.10417.23610614.10690-0.557604.553903.41170K562METAP2
C4orf29ENSG00000164074.10674.24150814.49750-0.272602.156001.43680K562MTPAP
C4orf29ENSG00000164074.10433.60320612.65360-0.498703.108401.71170K562NONO
C4orf29ENSG00000164074.10660.87950863.45740-0.385702.807201.44860K562PCBP1
C4orf29ENSG00000164074.10707.36500976.98960-0.465903.847102.85610K562PPIG
C4orf29ENSG00000164074.10372.43060605.19440-0.700405.563804.49890K562PRPF8
C4orf29ENSG00000164074.10393.43200553.65620-0.492903.501302.46640K562PSIP1
C4orf29ENSG00000164074.10619.24710858.38360-0.471103.835203.06510K562PTBP1
C4orf29ENSG00000164074.10706.84680949.44630-0.425703.254602.67340K562PUS1
C4orf29ENSG00000164074.10741.87760925.01540-0.318302.645402.06420K562RBM15
C4orf29ENSG00000164074.10527.90590823.32070-0.641205.694704.43420K562RBM22
C4orf29ENSG00000164074.10646.97320866.35880-0.421302.933301.80320K562NELFE
C4orf29ENSG00000164074.10500.79630687.57500-0.457303.980202.94870K562SF3B4
C4orf29ENSG00000164074.10509.74920841.45420-0.723107.117805.99140K562SRSF1
C4orf29ENSG00000164074.10566.61790794.57150-0.487803.966502.66960K562SRSF5
C4orf29ENSG00000164074.10434.40690586.03120-0.431902.278601.36210K562SUPV3L1
C4orf29ENSG00000164074.10502.98450851.70980-0.759807.598506.36030K562TARDBP
C4orf29ENSG00000164074.10354.49290534.16110-0.591504.156302.11910K562TFIP11
C4orf29ENSG00000164074.10615.01910821.54320-0.417703.114202.23750K562TIA1
C4orf29ENSG00000164074.10593.76960805.93370-0.440803.310602.09680K562TRA2A
C4orf29ENSG00000164074.10427.24240565.71190-0.405002.500201.60860K562TRIM56
C4orf29ENSG00000164074.10986.510801228.69220-0.316702.359301.57210K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4orf29 is not available on ENCORE database.





11 RBPs can affect the splicing of C4orf29 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC4orf29ENSG00000164074.10chr4+1289108751289109761289054931289055781289300741289301530.182000.002100.05540includedK562AKAP8L
SEC4orf29ENSG00000164074.10chr4+1288871081288872111288866281288867611289040931289042020.172000.000880.07842includedHepG2DDX59
SEC4orf29ENSG00000164074.10chr4+1288871081288872111288866281288867611289040931289042020.248000.000040.00603includedHepG2FTO
SEC4orf29ENSG00000164074.10chr4+1289228701289229151289054931289055781289300741289301530.447000.000000.00004includedK562HNRNPM
SEC4orf29ENSG00000164074.10chr4+1289228701289229151289054931289055781289300741289301530.228000.000370.07159includedK562SBDS
SEC4orf29ENSG00000164074.10chr4+1288871081288872111288866281288867611289040931289042020.086000.000020.04355includedK562CPEB4
SEC4orf29ENSG00000164074.10chr4+128910875128910976128905493128905578128930074128930153-0.217000.000220.00529excludedK562HNRNPC
A3SSC4orf29ENSG00000164074.10chr4+1289422781289423931289422911289423931289412341289413240.079000.012640.06462longerK562AQR
A3SSC4orf29ENSG00000164074.10chr4+1289040701289042021289040931289042021288865311288867610.077000.000320.00249longerK562AQR
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.075000.005020.055072includedK562DROSHA
MXEC4orf29ENSG00000164074.10chr4+1289108751289109761289228701289229151289054931289055781289300741289301530.128000.007020.078971includedHepG2HNRNPUL1
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.143000.000010.001242includedK562SBDS
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.267000.000550.054152includedHepG2HNRNPM
MXEC4orf29ENSG00000164074.10chr4+128949629128950008128951664128951827128942291128942393128956916128957441-0.288000.000490.020902includedHepG2HNRNPC
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.067000.006330.099662includedK562PPIL4
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.406000.000000.000002includedK562HNRNPM
MXEC4orf29ENSG00000164074.10chr4+128910875128910976128922870128922915128905493128905578128930074128930153-0.074000.003130.090372includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C4orf29 is not avaliable on ENCORE database.