SLC50A1

General Information

Gene Name       : SLC50A1
Gene ID             : ENSG00000169241.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC50A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC50A1ENSG00000169241.1847.0236.5041.76ENCSR000AEF
HepG2SLC50A1ENSG00000169241.1815.7617.6516.70ENCSR985KAT
K562SLC50A1ENSG00000169241.1862.3164.9963.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC50A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC50A1 RNA is bound by 16 proteins.  







eCLIP assay for SLC50A1 is not avaliable on ENCORE database.





16 proteins are bound to SLC50A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1155110978155111059+3'-UTR,intron-Proximal3.708867.23242K562TIA1
chr1155110975155111041+3'-UTR,intron-Proximal3.539848.52472K562DDX55
chr1155110967155111012+3'-UTR,intron-Proximal6.46674400.00000K562PABPC4
chr1155110975155111052+3'-UTR,intron-Proximal3.0890314.33390K562UPF1
chr1155110975155111056+3'-UTR,intron-Proximal3.844646.34658HepG2DDX55
chr1155110974155111058+3'-UTR,intron-Proximal4.2703932.40709HepG2UPF1
chr1155110975155111087+3'-UTR,intron-Distal,intron-Proximal3.4660914.30322K562DDX6
chr1155110975155111040+3'-UTR,intron-Proximal4.161323.44763HepG2LSM11
chr1155110974155111019+3'-UTR,intron-Proximal3.204204.41002K562APOBEC3C
chr1155108324155108413+5'-UTR,CDS,intron-Distal4.5032510.58311K562DDX3X
chr1155108250155108354+5'-UTR,intron-Distal,intron-Proximal4.680366.58550HepG2CSTF2T
chr1155108046155108157+5'-UTR,CDS,intron-Proximal4.458564.61649HepG2CSTF2T
chr1155108464155108541+CDS,intron-Distal,intron-Proximal6.4986321.64132HepG2AQR
chr1155109353155109395+CDS,intron-Distal3.255664.31744K562YBX3
chr1155110467155110556+CDS5.143648.92431K562IGF2BP2
chr1155108462155108515+CDS,intron-Distal,intron-Proximal5.6647423.36607K562AQR
chr1155110655155110742+CDS,intron-Proximal4.016975.89423K562SND1
chr1155110036155110066+CDS,intron-Distal,intron-Proximal3.158503.29348K562YBX3
chr1155109302155109341+CDS,intron-Distal,intron-Proximal3.236296.20049K562YBX3
chr1155108773155108792+CDS,intron-Proximal4.165184.32914K562YBX3
chr1155108515155108552+intron-Distal,intron-Proximal6.3932115.90046K562AQR
chr1155108495155108619+intron-Distal,intron-Proximal3.615384.12529K562GTF2F1
chr1155108471155108570+intron-Distal,intron-Proximal5.4046711.60422HepG2PRPF4
chr1155108716155108766+intron-Proximal6.5676620.22372K562AQR
chr1155108714155108760+intron-Proximal4.124756.92290HepG2AQR
chr1155108698155108769+intron-Proximal4.859975.33214K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC50A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC50A1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of SLC50A1.  








The Knockdown/knockout RNA-Seq assay for SLC50A1 is not available on ENCORE database.





77 RBPs can affect the gene expression of SLC50A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC50A1ENSG00000169241.13243.82840399.54780-0.712506.922506.04770HepG2ACO1
SLC50A1ENSG00000169241.13262.10230401.43590-0.615005.233204.20870HepG2AKAP8L
SLC50A1ENSG00000169241.13808.76750571.517500.500803.555902.66830HepG2ASCC1
SLC50A1ENSG00000169241.13378.64010542.48570-0.518803.833502.19400HepG2ATP5C1
SLC50A1ENSG00000169241.13624.54470351.350900.829808.356907.38550HepG2BOP1
SLC50A1ENSG00000169241.13381.71090542.98500-0.508403.127102.30760HepG2CIRBP
SLC50A1ENSG00000169241.13265.23270399.47410-0.590805.198804.33890HepG2CKAP4
SLC50A1ENSG00000169241.13740.95690322.553201.1998016.1125014.62100HepG2CPSF6
SLC50A1ENSG00000169241.13399.69050543.22620-0.442703.295202.60630HepG2CELF1
SLC50A1ENSG00000169241.13927.64920568.434800.706505.869604.99930HepG2DDX6
SLC50A1ENSG00000169241.13454.24830316.355000.521804.109603.26640HepG2DNAJC21
SLC50A1ENSG00000169241.13196.37800288.19020-0.553403.079101.94360HepG2EIF3G
SLC50A1ENSG00000169241.13888.34930603.791900.557003.934003.17610HepG2EIF4A3
SLC50A1ENSG00000169241.13308.42580587.93420-0.930706.639905.60680HepG2EIF4B
SLC50A1ENSG00000169241.13398.11570576.27200-0.533605.097204.01790HepG2EIF4G1
SLC50A1ENSG00000169241.13413.34640607.29720-0.555103.578102.71020HepG2FIP1L1
SLC50A1ENSG00000169241.13411.82230609.29270-0.565103.931603.11660HepG2FXR1
SLC50A1ENSG00000169241.13395.30500565.15990-0.515703.141702.43460HepG2G3BP1
SLC50A1ENSG00000169241.13394.65710600.05290-0.604504.360803.23080HepG2G3BP2
SLC50A1ENSG00000169241.13173.15940251.56350-0.538802.221701.42560HepG2GEMIN5
SLC50A1ENSG00000169241.13522.01720365.622500.513602.851702.20180HepG2GPKOW
SLC50A1ENSG00000169241.13485.20940319.385600.603204.086003.32390HepG2HNRNPA1
SLC50A1ENSG00000169241.13532.45110355.251500.583704.087003.25650HepG2HNRNPC
SLC50A1ENSG00000169241.13903.92510348.921801.3732021.4339019.94050HepG2HNRNPLL
SLC50A1ENSG00000169241.13318.97030612.90220-0.942208.142507.10740HepG2MATR3
SLC50A1ENSG00000169241.13360.46210627.32730-0.799406.684405.71920HepG2NCBP2
SLC50A1ENSG00000169241.13746.02020451.599000.724102.767301.87930HepG2PABPC1
SLC50A1ENSG00000169241.13269.02830349.32120-0.376802.109001.36150HepG2PARN
SLC50A1ENSG00000169241.13412.52330573.18730-0.474504.234003.51080HepG2PCBP1
SLC50A1ENSG00000169241.13271.57450438.08820-0.689906.687905.54370HepG2PRPF4
SLC50A1ENSG00000169241.13122.71880217.17240-0.823503.573802.66780HepG2PRPF8
SLC50A1ENSG00000169241.13367.91300583.26050-0.664807.315206.50910HepG2PTBP1
SLC50A1ENSG00000169241.13380.07780586.97120-0.627006.313905.49430HepG2PUM1
SLC50A1ENSG00000169241.13451.12760586.57460-0.378802.715602.05080HepG2PUM2
SLC50A1ENSG00000169241.13242.88000631.64070-1.3789022.7660021.22690HepG2QKI
SLC50A1ENSG00000169241.13178.02410319.78550-0.845003.536902.74260HepG2RAVER1
SLC50A1ENSG00000169241.13371.70590517.74380-0.478103.585603.01690HepG2RBM22
SLC50A1ENSG00000169241.13254.31700573.27150-1.1726015.3622013.84330HepG2RBM25
SLC50A1ENSG00000169241.13290.80930649.09550-1.1584018.6250017.46310HepG2NELFE
SLC50A1ENSG00000169241.13392.54320604.57590-0.623106.536305.64660HepG2RECQL
SLC50A1ENSG00000169241.13820.92940471.872800.798809.437708.29910HepG2RPLP0
SLC50A1ENSG00000169241.13125.89400214.83230-0.771003.041302.22280HepG2RRP9
SLC50A1ENSG00000169241.13792.08340314.279401.3335022.3250020.74330HepG2SAFB2
SLC50A1ENSG00000169241.13225.01730547.38480-1.2825011.6263010.18100HepG2SF3A3
SLC50A1ENSG00000169241.13313.87820607.21180-0.9520013.1180011.97980HepG2SF3B4
SLC50A1ENSG00000169241.13411.04020530.12470-0.367102.145401.51380HepG2SLBP
SLC50A1ENSG00000169241.13556.82430384.270400.535002.387801.66360HepG2SNRNP70
SLC50A1ENSG00000169241.13274.37230633.81300-1.2079020.2614019.22930HepG2SRSF1
SLC50A1ENSG00000169241.13240.43520545.93480-1.1831010.944009.81060HepG2SRSF5
SLC50A1ENSG00000169241.13520.98270430.401900.275501.969101.37110HepG2SRSF7
SLC50A1ENSG00000169241.13352.85410515.65390-0.547305.190604.47680HepG2SRSF9
SLC50A1ENSG00000169241.13507.73090701.23050-0.465802.820701.52830HepG2SSRP1
SLC50A1ENSG00000169241.13462.95040620.93130-0.423603.121902.46840HepG2SUCLG1
SLC50A1ENSG00000169241.13709.40390409.922000.791203.691002.61580HepG2SUPT6H
SLC50A1ENSG00000169241.13491.82120280.212600.811505.559504.65270HepG2SUPV3L1
SLC50A1ENSG00000169241.13485.52400342.933800.501503.826603.25910HepG2TIAL1
SLC50A1ENSG00000169241.13435.87870345.975300.333202.208201.69320HepG2TRIM56
SLC50A1ENSG00000169241.13359.81090571.69850-0.668004.429303.35310HepG2UBE2L3
SLC50A1ENSG00000169241.13715.97320485.447000.560506.912305.89070HepG2UPF1
SLC50A1ENSG00000169241.13598.37940468.679400.352402.699202.10800HepG2UTP3
SLC50A1ENSG00000169241.13661.15950444.624300.572303.384802.16420HepG2XPO5
SLC50A1ENSG00000169241.13820.800501463.44430-0.8343012.0508010.95090K562AQR
SLC50A1ENSG00000169241.131013.087101396.78810-0.463406.171404.73980K562ATP5C1
SLC50A1ENSG00000169241.131396.239501617.39450-0.212102.009601.43880K562DDX47
SLC50A1ENSG00000169241.13529.16880732.18920-0.468503.333602.32700K562EFTUD2
SLC50A1ENSG00000169241.131353.528201075.484100.331602.331401.66250K562EIF2S2
SLC50A1ENSG00000169241.13499.62430747.45420-0.581102.731501.73540K562EIF3A
SLC50A1ENSG00000169241.131274.226201877.22280-0.5590010.359408.58530K562EIF4G2
SLC50A1ENSG00000169241.13693.40410928.12440-0.420603.084402.17670K562FMR1
SLC50A1ENSG00000169241.13751.10650897.33450-0.256601.934901.41120K562FXR1
SLC50A1ENSG00000169241.13490.51620750.64720-0.613804.054703.15730K562G3BP2
SLC50A1ENSG00000169241.131788.222601432.964200.319401.972901.32850K562GRSF1
SLC50A1ENSG00000169241.131939.764601398.392400.472004.975403.91860K562HSPD1
SLC50A1ENSG00000169241.13775.02940963.35800-0.313802.251501.48960K562MAGOH
SLC50A1ENSG00000169241.13622.54720857.13690-0.461303.800602.65520K562PCBP2
SLC50A1ENSG00000169241.131689.302801171.120200.528403.671002.70570K562PPIG
SLC50A1ENSG00000169241.13509.03790712.50610-0.485103.344902.51670K562PRPF8
SLC50A1ENSG00000169241.131847.111602178.75490-0.238202.316401.34750K562PUM1
SLC50A1ENSG00000169241.13336.82190840.01400-1.3184027.4663023.41000K562QKI
SLC50A1ENSG00000169241.13552.29390712.03900-0.366502.666201.36160K562RBM25
SLC50A1ENSG00000169241.13545.00950828.24880-0.603804.193202.97600K562SF3B1
SLC50A1ENSG00000169241.13565.94440780.58520-0.463904.335503.25770K562SF3B4
SLC50A1ENSG00000169241.131124.538301355.60670-0.269603.212602.21160K562SRPK2
SLC50A1ENSG00000169241.13558.81790917.56890-0.715408.965307.70180K562SRSF1
SLC50A1ENSG00000169241.13895.339001150.18300-0.361403.287902.39350K562SYNCRIP
SLC50A1ENSG00000169241.13935.76200730.082100.358002.279901.36470K562UCHL5
SLC50A1ENSG00000169241.131717.488201421.886400.272403.295402.51550K562UPF1
SLC50A1ENSG00000169241.13798.770001460.90330-0.8710010.745808.57800K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC50A1 is not available on ENCORE database.





32 RBPs can affect the splicing of SLC50A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551093031551094271551104541551105740.092000.004580.07077includedK562SRSF1
SESLC50A1ENSG00000169241.13chr1+155110036155110198155108774155108852155110454155110574-0.150000.000050.00156excludedHepG2U2AF1
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551093031551094271551104541551105740.088000.000370.08402includedK562PCBP1
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.455000.000070.00152excludedHepG2U2AF2
SESLC50A1ENSG00000169241.13chr1+1551093031551094271551087741551088521551100361551101980.108000.007270.06310includedK562AQR
SESLC50A1ENSG00000169241.13chr1+155110036155110198155109303155109427155110454155110574-0.113000.000160.00938excludedK562FXR1
SESLC50A1ENSG00000169241.13chr1+1551093031551094271551087861551088521551104541551105740.156000.000320.06629includedK562HNRNPA1
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.221000.000600.03900excludedHepG2NCBP2
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551087741551088521551104541551105740.275000.000300.01854includedHepG2SFPQ
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.255000.000320.02126excludedHepG2PTBP1
SESLC50A1ENSG00000169241.13chr1+1551093031551094271551087741551088521551100361551101980.242000.001110.07160includedHepG2HNRNPL
SESLC50A1ENSG00000169241.13chr1+1551093031551094271551087741551088521551104541551105740.184000.000090.07761includedK562DDX21
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551087741551088521551104541551105740.155000.000090.02768includedK562SBDS
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551087741551088521551104541551105740.177000.000030.00250includedHepG2PCBP1
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.328000.000000.00013excludedHepG2PCBP1
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.213000.002490.09162excludedHepG2SF3B4
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110454155110574-0.337000.000650.01396excludedK562U2AF2
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551093031551094271551104541551105740.076000.000000.00043includedK562HNRNPU
SESLC50A1ENSG00000169241.13chr1+1551100361551101981551087741551088521551104541551105740.107000.000200.02934includedK562CPSF6
SESLC50A1ENSG00000169241.13chr1+1551093031551094271551087741551088521551104541551105740.181000.001910.06604includedK562SF3B1
SESLC50A1ENSG00000169241.13chr1+155110036155110198155109303155109427155110454155110574-0.134000.001590.05754excludedK562SF3B1
SESLC50A1ENSG00000169241.13chr1+155109303155109427155108774155108852155110036155110198-0.301000.000080.00838excludedHepG2SRSF9
SESLC50A1ENSG00000169241.13chr1+155110036155110198155108774155108852155110454155110574-0.156000.000210.04192excludedK562EIF3G
SESLC50A1ENSG00000169241.13chr1+155110036155110198155109303155109427155110454155110574-0.158000.000070.02655excludedK562SERBP1
A3SSSLC50A1ENSG00000169241.13chr1+1551104301551105741551104541551105741551100361551101980.054000.000000.00000longerK562AQR
A5SSSLC50A1ENSG00000169241.13chr1+1551083331551085751551083331551084671551087741551088520.165000.000430.06861longerHepG2HNRNPU
A5SSSLC50A1ENSG00000169241.13chr1+1551087211551088721551087211551088521551093031551094270.096000.000250.02916longerK562FXR1
A5SSSLC50A1ENSG00000169241.13chr1+1551083331551084671551083331551084481551087741551088520.067000.000000.00401longerK562DROSHA
A5SSSLC50A1ENSG00000169241.13chr1+1551083331551084671551083331551084481551087741551088520.185000.000190.07381longerHepG2XRN2
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155107819155108156155110454155110574-0.076000.000070.030932includedK562NSUN2
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.077000.006070.082602includedHepG2U2AF1
MXESLC50A1ENSG00000169241.13chr1+1551087741551088521551093031551094271551083251551084671551100361551101980.173000.004600.094721includedHepG2MATR3
MXESLC50A1ENSG00000169241.13chr1+1551087741551088721551093031551094271551083421551084671551100361551101980.188000.004810.098571includedHepG2MATR3
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.189000.000120.007082includedHepG2PTBP1
MXESLC50A1ENSG00000169241.13chr1+1551087741551088521551093031551094271551083251551084671551100361551101980.192000.000800.050871includedHepG2IGF2BP3
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088521551104541551105740.111000.000370.024341includedK562SF3B1
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.219000.000170.013242includedHepG2SRSF9
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155108333155108467155110454155110574-0.099000.002000.062102includedK562LIN28B
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088721551104541551105740.095000.000790.036071includedK562FXR1
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088521551104541551105740.092000.016730.095531includedK562AQR
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.158000.000020.000672includedK562U2AF2
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108872155110454155110574-0.059000.000530.087162includedK562EIF4G2
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.159000.008300.070152includedHepG2SFPQ
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155107819155108156155110454155110574-0.238000.000030.000942includedHepG2SFPQ
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155108333155108467155110454155110574-0.329000.000010.000422includedHepG2SFPQ
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.261000.000000.000002includedHepG2U2AF2
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108872155110454155110574-0.078000.000440.062452includedK562PCBP1
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.202000.000010.000922includedHepG2PCBP1
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.201000.000040.001692includedHepG2HNRNPUL1
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155108333155108467155110454155110574-0.266000.000390.009392includedHepG2HNRNPUL1
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.091000.000340.026192includedK562PHF6
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110054155110198155108774155108852155110454155110574-0.106000.000080.009682includedK562PHF6
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155108333155108467155110454155110574-0.122000.001820.047292includedK562SBDS
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155109303155109427155108325155108467155110036155110198-0.118000.000600.023932includedK562SBDS
MXESLC50A1ENSG00000169241.13chr1+155108774155108872155109303155109427155108342155108467155110036155110198-0.143000.000300.014672includedK562SBDS
MXESLC50A1ENSG00000169241.13chr1+155108774155108852155110036155110198155108333155108467155110454155110574-0.130000.003200.076042includedHepG2HNRNPU
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.091000.004590.080382includedK562PPIL4
MXESLC50A1ENSG00000169241.13chr1+1551087861551088521551100361551101981551083421551084671551104541551105740.106000.000810.091131includedK562EIF3G
MXESLC50A1ENSG00000169241.13chr1+1551087741551088521551100361551101981551078191551081561551104541551105740.122000.000190.034911includedK562EIF3G
MXESLC50A1ENSG00000169241.13chr1+155109303155109427155110036155110198155108774155108852155110454155110574-0.137000.000440.019542includedHepG2SUPV3L1
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088521551104541551105740.157000.000500.023351includedHepG2HNRNPL
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088721551104541551105740.090000.000760.080441includedHepG2XRCC6
MXESLC50A1ENSG00000169241.13chr1+1551093031551094271551100361551101981551087741551088721551104541551105740.109000.002180.094751includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC50A1 is not avaliable on ENCORE database.