TMEM161B-AS1

General Information

Gene Name       : TMEM161B-AS1
Gene ID             : ENSG00000247828.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM161B-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM161B-AS1ENSG00000247828.712.289.1410.71ENCSR000AEF
HepG2TMEM161B-AS1ENSG00000247828.75.476.706.08ENCSR985KAT
K562TMEM161B-AS1ENSG00000247828.719.0215.9617.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM161B-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM161B-AS1 RNA is bound by 22 proteins.  







eCLIP assay for TMEM161B-AS1 is not avaliable on ENCORE database.





22 proteins are bound to TMEM161B-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58757102787571109+intron-Distal4.5899512.12257K562MATR3
chr58757086487570947+intron-Distal4.143745.95721HepG2MATR3
chr58758332887583370+intron-Distal3.247956.72164K562UCHL5
chr58757765487577761+intron-Distal,intron-Proximal3.172603.90146K562KHSRP
chr58758325487583365+intron-Distal4.029563.62765K562SRSF1
chr58758324587583328+intron-Distal,intron-Proximal4.7468215.61325K562UCHL5
chr58756755587567618+intron-Distal3.171895.16337HepG2U2AF2
chr58756755887567608+intron-Distal4.765946.21228K562U2AF2
chr58757084187570935+intron-Distal3.1879110.25361HepG2SUGP2
chr58756500787565077+intron-Distal,intron-Proximal4.600587.03763K562EFTUD2
chr58757795087578020+intron-Distal,intron-Proximal3.370833.47089HepG2TIAL1
chr58757121087571269+intron-Distal4.506984.61447HepG2SUGP2
chr58757123087571336+intron-Distal4.7946835.82611K562QKI
chr58756694887567052+intron-Distal,polyA_site3.425248.22729K562KHSRP
chr58756500587565076+intron-Distal,intron-Proximal5.427288.53392K562GTF2F1
chr58757142687571494+intron-Distal3.5924912.43138K562KHSRP
chr58756668987566770+intron-Distal3.206815.96041K562KHSRP
chr58757087387571027+intron-Distal5.8434615.93546K562MATR3
chr58757095587571015+intron-Distal4.412613.74583HepG2PTBP1
chr58757105187571121+intron-Distal3.171975.02059K562PTBP1
chr58756687587566948+intron-Distal4.230299.40001K562KHSRP
chr58757117087571239+intron-Distal3.290043.32889K562MATR3
chr58757095287571030+intron-Distal4.661119.46053K562PTBP1
chr58756643687566645+intron-Distal,intron-Proximal3.194769.70086K562FUS
chr58756653787566672+intron-Distal3.103285.27624HepG2KHSRP
chr58757103587571126+intron-Distal4.529847.22843HepG2PTBP1
chr58756500687565064+intron-Distal,intron-Proximal3.808434.35635K562PRPF8
chr58757050787570543+intron-Distal3.272243.91859HepG2SUGP2
chr58756646987566608+intron-Distal,intron-Proximal3.849565.12645HepG2CDC40
chr58756919287569276+intron-Distal3.127914.88448HepG2HNRNPL
chr58757785187577932+intron-Distal,intron-Proximal3.220365.75243K562ZNF622
chr58757712387577180+intron-Distal3.095253.06005HepG2QKI
chr58758324487583427+intron-Distal,intron-Proximal3.178777.55049K562GRWD1
chr58756500487565087+intron-Distal,intron-Proximal4.682226.92157K562CSTF2T
chr58756654287566659+intron-Distal3.372893.70333HepG2FUS
chr58759584887595982+intron-Distal3.403145.05215K562HNRNPL
chr58756500987565059+intron-Distal,intron-Proximal5.345624.75571HepG2EFTUD2
chr58757125687571359+intron-Distal6.1971912.92705HepG2QKI
chr58756500187565089+intron-Distal,intron-Proximal4.872195.74291HepG2FAM120A
chr58758218987582275+intron-Distal3.984313.51768K562NOLC1
chr58758325187583362+intron-Distal,intron-Proximal3.742074.30740K562PUM1
chr58757126887571375+intron-Distal3.7211011.36345K562KHSRP
chr58756658087566671+intron-Distal5.1838910.10176K562SRSF1
chr58757710987577172+intron-Distal3.439464.51091HepG2HNRNPL
chr58756485687564937+intron-Proximal3.594643.40404HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM161B-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM161B-AS1 is not available on ENCORE database.

  • 43 RBPs can affect the levels of TMEM161B-AS1.  








The Knockdown/knockout RNA-Seq assay for TMEM161B-AS1 is not available on ENCORE database.





43 RBPs can affect the gene expression of TMEM161B-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM161B-AS1ENSG00000247828.3127.1425060.107801.080704.246103.42370HepG2DDX21
TMEM161B-AS1ENSG00000247828.394.0241048.108900.966602.633102.02130HepG2DDX3X
TMEM161B-AS1ENSG00000247828.3214.2600039.728402.4310019.4635017.99120HepG2EIF2S1
TMEM161B-AS1ENSG00000247828.3162.5864043.908301.8885011.123809.87060HepG2EIF4A3
TMEM161B-AS1ENSG00000247828.389.4375041.091801.121903.384202.65200HepG2G3BP1
TMEM161B-AS1ENSG00000247828.399.1544043.616401.184703.799102.74540HepG2G3BP2
TMEM161B-AS1ENSG00000247828.387.2278041.595301.068302.862302.15130HepG2HNRNPK
TMEM161B-AS1ENSG00000247828.396.6682042.010501.202203.464402.32590HepG2KHSRP
TMEM161B-AS1ENSG00000247828.3100.3575044.305801.179503.788403.02100HepG2MAGOH
TMEM161B-AS1ENSG00000247828.3105.0736045.606601.204003.905803.15760HepG2NCBP2
TMEM161B-AS1ENSG00000247828.377.1620040.622500.925502.292301.63080HepG2PABPC4
TMEM161B-AS1ENSG00000247828.350.12680106.77700-1.090903.956803.36580HepG2RBM22
TMEM161B-AS1ENSG00000247828.352.68170106.92090-1.021202.434201.80330HepG2SF3A3
TMEM161B-AS1ENSG00000247828.3121.0484064.387000.910602.754801.75640HepG2SRSF3
TMEM161B-AS1ENSG00000247828.3115.1386052.461601.133904.340203.49870HepG2SRSF7
TMEM161B-AS1ENSG00000247828.360.7098027.893701.121902.787702.02480HepG2UCHL5
TMEM161B-AS1ENSG00000247828.362.54720104.28680-0.737502.490201.96330HepG2ZNF622
TMEM161B-AS1ENSG00000247828.3261.23680547.08270-1.0664014.8902013.68230K562AGGF1
TMEM161B-AS1ENSG00000247828.3377.25780601.11990-0.672106.273304.64970K562AKAP8
TMEM161B-AS1ENSG00000247828.3291.29630569.25420-0.9666010.787609.38210K562AKAP8L
TMEM161B-AS1ENSG00000247828.3375.24210597.26540-0.670607.431205.82640K562ATP5C1
TMEM161B-AS1ENSG00000247828.3397.40180612.62190-0.624406.891205.40370K562DKC1
TMEM161B-AS1ENSG00000247828.3226.45550316.71450-0.484002.794801.99470K562EIF3G
TMEM161B-AS1ENSG00000247828.3395.89680278.231200.508702.949601.83910K562HNRNPA1
TMEM161B-AS1ENSG00000247828.3280.01450207.982800.428901.813901.31820K562HNRNPC
TMEM161B-AS1ENSG00000247828.3591.63820441.796100.421202.953501.85790K562HNRNPL
TMEM161B-AS1ENSG00000247828.3351.60170604.15650-0.781007.902406.33080K562KIF1C
TMEM161B-AS1ENSG00000247828.3355.54070578.29760-0.701804.807903.27240K562MAK16
TMEM161B-AS1ENSG00000247828.3378.12400676.80290-0.839909.665707.76960K562MBNL1
TMEM161B-AS1ENSG00000247828.3455.07800319.863000.508604.080403.11440K562MTPAP
TMEM161B-AS1ENSG00000247828.3234.34970474.38670-1.017407.396605.69190K562NAA15
TMEM161B-AS1ENSG00000247828.3404.73160627.44370-0.632502.575201.39720K562PABPC1
TMEM161B-AS1ENSG00000247828.3242.95500574.29810-1.241102.748001.76150K562PABPN1
TMEM161B-AS1ENSG00000247828.3134.01250224.90370-0.746903.331802.50640K562PRPF8
TMEM161B-AS1ENSG00000247828.3428.66600686.64080-0.679705.771704.59790K562PUF60
TMEM161B-AS1ENSG00000247828.3272.44920564.61660-1.0513011.6580010.59120K562PUS1
TMEM161B-AS1ENSG00000247828.3228.84850550.07360-1.2652018.4975016.92800K562RBM15
TMEM161B-AS1ENSG00000247828.3305.88820192.454600.668403.015101.37170K562SERBP1
TMEM161B-AS1ENSG00000247828.3433.90920307.763000.495503.792602.40880K562SRSF7
TMEM161B-AS1ENSG00000247828.3554.20850392.736600.496803.063801.73720K562STAU1
TMEM161B-AS1ENSG00000247828.3188.45470269.07820-0.513802.640201.84090K562SYNCRIP
TMEM161B-AS1ENSG00000247828.3188.30430274.34130-0.542902.960502.13000K562U2AF2
TMEM161B-AS1ENSG00000247828.3341.37990572.38890-0.745603.407901.92070K562UTP18
TMEM161B-AS1ENSG00000247828.3422.08200322.454900.388302.179201.40310K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM161B-AS1 is not available on ENCORE database.





19 RBPs can affect the splicing of TMEM161B-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758166887578531875786838758325287583473-0.633000.000000.00000excludedK562SRSF1
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756543487564860875649368756634287566402-0.256000.000000.00009excludedK562SRSF1
SETMEM161B-AS1ENSG00000247828.3chr5+875778588757792387566342875664028773208987732491-0.341000.000570.02010excludedK562AKAP8L
SETMEM161B-AS1ENSG00000247828.3chr5+8757857387578683875778588757792387583252875834730.545000.000410.09031includedK562PUM1
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756543487564860875649368756634287566402-0.226000.000370.08402excludedK562PCBP1
SETMEM161B-AS1ENSG00000247828.3chr5+8757785887577923875663428756640287732089877324910.375000.001970.06558includedK562FXR1
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756550487564860875649368756634287566402-0.179000.000120.00295excludedK562PUS1
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758166887578826875789038758325287583473-0.082000.004120.05371excludedK562PUS1
SETMEM161B-AS1ENSG00000247828.3chr5+8756528487565504875648608756493687566342875664020.411000.000860.05040includedHepG2NCBP2
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758166887578531875786838758325287583473-0.123000.000190.04497excludedK562APOBEC3C
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756543487564860875649368756634287566402-0.163000.000000.00013excludedK562U2AF1
SETMEM161B-AS1ENSG00000247828.3chr5+875778588757792387566342875664028773208987732491-0.397000.000000.00021excludedK562U2AF1
SETMEM161B-AS1ENSG00000247828.3chr5+8756528487565504875648608756493687566342875664020.089000.000180.04501includedK562SBDS
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758166887578531875786838758325287583473-0.269000.000180.03185excludedK562RBM22
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756550487564860875649368756634287566402-0.169000.000010.00022excludedK562U2AF2
SETMEM161B-AS1ENSG00000247828.3chr5+875778588757792387566342875664028773208987732491-0.539000.000000.00000excludedK562U2AF2
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756550487564860875649368756634287566402-0.216000.001310.03369excludedK562RBM15
SETMEM161B-AS1ENSG00000247828.3chr5+875778588757792387566342875664028773208987732491-0.340000.000300.01082excludedK562AGGF1
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756550487564860875649368756634287566402-0.235000.000020.00216excludedK562HNRNPK
SETMEM161B-AS1ENSG00000247828.3chr5+875652848756550487564860875649368756634287566402-0.281000.000130.02988excludedK562EIF3G
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758172087578531875786838758325287583473-0.345000.000030.05928excludedK562CPEB4
SETMEM161B-AS1ENSG00000247828.3chr5+8757785887577923875663428756640287732089877324910.312000.001140.02154includedK562HNRNPC
SETMEM161B-AS1ENSG00000247828.3chr5+875815578758166887578531875786838758325287583473-0.209000.000470.01016excludedK562HNRNPC
MXETMEM161B-AS1ENSG00000247828.3chr5+8757857387578683875815578758172087577858875779238758325287583473-0.125000.002570.062852includedK562UCHL5
MXETMEM161B-AS1ENSG00000247828.3chr5+8757853187578683875788268757890387577858875779238758155787581668-0.329000.000230.006252includedK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM161B-AS1 is not avaliable on ENCORE database.