USP13

General Information

Gene Name : USP13
Gene ID : ENSG00000058056.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USP13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP13	ENSG00000058056.8	12.68	10.17	11.43	ENCSR000AEF
HepG2	USP13	ENSG00000058056.8	14.35	17.44	15.89	ENCSR985KAT
K562	USP13	ENSG00000058056.8	0.60	0.61	0.60	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP13 is not avaliable on ENCORE database.

Proteins bound to RNA

USP13 RNA is bound by 14 proteins.

CanvasJS.com

eCLIP assay for USP13 is not avaliable on ENCORE database.

14 proteins are bound to USP13 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	179483576	179483643	+	CDS,intron-Proximal	3.64627	18.99913	HepG2	BCLAF1
chr3	179462881	179462975	+	CDS,intron-Proximal	4.13427	18.56106	HepG2	BCLAF1
chr3	179483489	179483576	+	CDS	4.01757	16.85893	HepG2	BCLAF1
chr3	179501847	179502009	+	3'-UTR,CDS	3.48055	15.83723	HepG2	BCLAF1
chr3	179462825	179463000	+	CDS,intron-Distal,intron-Proximal	4.62286	14.41804	HepG2	GRWD1
chr3	179453368	179453435	+	intron-Distal	5.55707	12.33396	HepG2	PTBP1
chr3	179404021	179404095	+	intron-Distal	5.29946	10.02324	HepG2	SUGP2
chr3	179371154	179371232	+	CDS,intron-Proximal	4.51627	9.68077	HepG2	PRPF8
chr3	179404460	179404511	+	intron-Distal	5.07500	9.34617	HepG2	SUGP2
chr3	179462828	179462881	+	CDS,intron-Proximal	3.18671	8.71292	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 56 entries

eCLIP assay for USP13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP13 is not available on ENCORE database.
135 RBPs can affect the levels of USP13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.

135 RBPs can affect the gene expression of USP13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP13	ENSG00000058056.4	561.82460	1750.91600	-1.63990	70.90650	68.73680	HepG2	DKC1
USP13	ENSG00000058056.4	671.96300	3262.71550	-2.27960	64.07690	62.07350	HepG2	AKAP1
USP13	ENSG00000058056.4	673.79100	2851.89390	-2.08150	54.51030	51.77120	HepG2	EIF4A3
USP13	ENSG00000058056.4	852.62050	2859.16510	-1.74560	51.05170	49.40920	HepG2	NELFE
USP13	ENSG00000058056.4	741.77010	2564.77450	-1.78980	49.60920	47.04340	HepG2	CIRBP
USP13	ENSG00000058056.4	861.21270	2879.07360	-1.74120	45.28370	42.90950	HepG2	MAGOH
USP13	ENSG00000058056.4	493.85050	1317.51990	-1.41570	38.34930	36.88320	HepG2	TIAL1
USP13	ENSG00000058056.4	1047.45120	3125.25200	-1.57710	38.77460	36.71310	HepG2	DDX3X
USP13	ENSG00000058056.4	764.63940	1966.99910	-1.36310	36.18890	34.33940	HepG2	PUF60
USP13	ENSG00000058056.4	520.18850	1389.35090	-1.41730	32.59490	30.65420	HepG2	DDX21
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.

7 RBPs can affect the splicing of USP13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	USP13	ENSG00000058056.4	chr3	+	179418795	179418917			179399665	179399791	179424721	179424864	-0.37900	0.00004	0.00920	excluded	HepG2	PCBP2
SE	USP13	ENSG00000058056.4	chr3	+	179399665	179399791			179370542	179371181	179408028	179408089	-0.19800	0.00009	0.01371	excluded	HepG2	DDX59
MXE	USP13	ENSG00000058056.4	chr3	+	179408028	179408089	179418795	179418917	179370542	179371181	179424721	179424864	0.14000	0.00011	0.01467	1included	HepG2	DDX59
SE	USP13	ENSG00000058056.4	chr3	+	179408028	179408089			179399665	179399791	179424721	179424864	0.08000	0.00024	0.01537	included	HepG2	SFPQ
MXE	USP13	ENSG00000058056.4	chr3	+	179399665	179399791	179418795	179418917	179370542	179371181	179424721	179424864	0.34800	0.00029	0.03448	1included	HepG2	SSB
MXE	USP13	ENSG00000058056.4	chr3	+	179399665	179399791	179418795	179418917	179370542	179371181	179424721	179424864	0.28300	0.00040	0.04262	1included	HepG2	PCBP2
SE	USP13	ENSG00000058056.4	chr3	+	179428501	179428627			179426560	179426745	179437727	179437822	0.22600	0.00107	0.07363	included	HepG2	DDX3X
SE	USP13	ENSG00000058056.4	chr3	+	179483482	179483636			179481789	179481956	179499526	179499611	-0.05700	0.00198	0.04373	excluded	HepG2	SRSF1
SE	USP13	ENSG00000058056.4	chr3	+	179408028	179408089			179370542	179371181	179418795	179418917	-0.33000	0.00326	0.03760	excluded	HepG2	U2AF2
MXE	USP13	ENSG00000058056.4	chr3	+	179483482	179483636	179499526	179499629	179481789	179481956	179501835	179507189	-0.07700	0.00945	0.05148	2included	HepG2	U2AF2

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP13

General Information

Functions

Localization

Domains (AlphaFold: USP13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP13 is not avaliable on ENCORE database.

14 proteins are bound to USP13 RNA:

eCLIP assay for USP13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.

135 RBPs can affect the gene expression of USP13 :

The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.

7 RBPs can affect the splicing of USP13 :

The Knockdown/knockout RNA-Seq assay for USP13 is not avaliable on ENCORE database.