USP13

General Information

Gene Name       : USP13
Gene ID             : ENSG00000058056.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USP13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USP13ENSG00000058056.812.6810.1711.43ENCSR000AEF
HepG2USP13ENSG00000058056.814.3517.4415.89ENCSR985KAT
K562USP13ENSG00000058056.80.600.610.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USP13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USP13 RNA is bound by 14 proteins.  







eCLIP assay for USP13 is not avaliable on ENCORE database.





14 proteins are bound to USP13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3179418811179418919+3'-UTR,CDS,intron-Proximal3.474734.65365HepG2GRWD1
chr3179501847179502009+3'-UTR,CDS3.4805515.83723HepG2BCLAF1
chr3179418862179418913+3'-UTR,CDS3.792146.36847HepG2BCLAF1
chr3179424816179424863+3'-UTR,CDS3.283825.91405HepG2BCLAF1
chr3179426560179426637+3'-UTR,CDS,intron-Proximal3.247106.54857HepG2PPIG
chr3179371154179371232+CDS,intron-Proximal4.516279.68077HepG2PRPF8
chr3179481787179481839+CDS,intron-Proximal4.039586.72556HepG2PPIG
chr3179462828179462881+CDS,intron-Proximal3.186718.71292HepG2BCLAF1
chr3179371165179371247+CDS,intron-Proximal3.274295.76899HepG2EFTUD2
chr3179481787179481819+CDS,intron-Proximal3.355444.61799HepG2BCLAF1
chr3179481788179481860+CDS,intron-Proximal5.190597.92891HepG2GRWD1
chr3179460099179460139+CDS,intron-Proximal3.354963.86355HepG2PPIG
chr3179437809179437822+CDS3.820493.56019HepG2GRWD1
chr3179483579179483631+CDS3.869845.73400HepG2PPIG
chr3179481875179481950+CDS3.471027.01246HepG2BCLAF1
chr3179462881179462975+CDS,intron-Proximal4.1342718.56106HepG2BCLAF1
chr3179483576179483643+CDS,intron-Proximal3.6462718.99913HepG2BCLAF1
chr3179483489179483576+CDS4.0175716.85893HepG2BCLAF1
chr3179439189179439214+CDS,intron-Proximal4.234814.45558HepG2GRWD1
chr3179499540179499602+CDS3.422596.74947HepG2BCLAF1
chr3179483488179483563+CDS3.516776.88650HepG2GRWD1
chr3179458138179458225+CDS,intron-Proximal4.327296.81564HepG2PRPF8
chr3179460033179460099+CDS3.239304.77136HepG2PPIG
chr3179462825179463000+CDS,intron-Distal,intron-Proximal4.6228614.41804HepG2GRWD1
chr3179404500179404577+intron-Distal5.151166.23638HepG2QKI
chr3179380119179380179+intron-Distal3.759405.66122HepG2MATR3
chr3179463291179463382+intron-Distal3.774144.28267HepG2PTBP1
chr3179463314179463391+intron-Distal4.941715.77028HepG2PCBP2
chr3179404021179404095+intron-Distal5.2994610.02324HepG2SUGP2
chr3179380194179380269+intron-Distal4.770025.58061HepG2SUGP2
chr3179434702179434767+intron-Distal3.540373.95921HepG2U2AF2
chr3179408711179408776+intron-Distal4.404663.98468HepG2ILF3
chr3179371247179371311+intron-Distal,intron-Proximal5.156365.58036HepG2EFTUD2
chr3179404732179404785+intron-Distal4.500483.27829HepG2MATR3
chr3179380223179380310+intron-Distal4.737445.97584HepG2MATR3
chr3179404656179404776+intron-Distal4.527064.07628HepG2PTBP1
chr3179384114179384180+intron-Distal3.358863.11000HepG2HNRNPM
chr3179453368179453435+intron-Distal5.5570712.33396HepG2PTBP1
chr3179380507179380549+intron-Distal3.950313.04224HepG2SUGP2
chr3179404511179404549+intron-Distal4.315324.51299HepG2SUGP2
chr3179380039179380122+intron-Distal3.883596.23177HepG2SUGP2
chr3179404460179404511+intron-Distal5.075009.34617HepG2SUGP2
chr3179450169179450257+intron-Distal4.716975.68226HepG2HNRNPM
chr3179463319179463382+intron-Distal3.246645.40232HepG2U2AF2
chr3179404728179404816+intron-Distal3.081184.57938HepG2SUGP2
chr3179441239179441363+intron-Distal3.362283.23179HepG2RBFOX2
chr3179403729179403777+intron-Distal3.708466.02668HepG2SUGP2
chr3179403783179403808+intron-Distal3.922023.63454HepG2SUGP2
chr3179405012179405086+intron-Distal5.016548.41240HepG2SUGP2
chr3179404462179404500+intron-Distal4.087283.55640HepG2QKI
chr3179380122179380176+intron-Distal4.053546.98738HepG2SUGP2
chr3179498216179498416+intron-Distal4.087285.57156HepG2QKI
chr3179379890179379965+intron-Distal4.008587.95181HepG2SUGP2
chr3179380372179380431+intron-Distal4.622296.05753HepG2SUGP2
chr3179381151179381175+intron-Distal4.016543.39864HepG2SUGP2
chr3179437845179437906+intron-Proximal5.155668.04569HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USP13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USP13 is not available on ENCORE database.

  • 135 RBPs can affect the levels of USP13.  








The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.





135 RBPs can affect the gene expression of USP13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USP13ENSG00000058056.4694.771901568.79390-1.1750010.937009.26630HepG2ABCF1
USP13ENSG00000058056.41012.065601830.09410-0.8546027.4244025.97340HepG2ACO1
USP13ENSG00000058056.4852.182001207.08800-0.502304.495803.26210HepG2ADAR
USP13ENSG00000058056.4671.963003262.71550-2.2796064.0769062.07350HepG2AKAP1
USP13ENSG00000058056.41250.256402652.67550-1.0852017.9957015.62730HepG2AKAP8
USP13ENSG00000058056.41446.898001838.73050-0.345704.911603.91510HepG2AKAP8L
USP13ENSG00000058056.41529.534202699.53810-0.8196011.9591010.41550HepG2ASCC1
USP13ENSG00000058056.4703.974201125.27130-0.676705.698804.33340HepG2BCCIP
USP13ENSG00000058056.4561.141601046.83150-0.8996012.4873011.33770HepG2BOP1
USP13ENSG00000058056.41949.604201423.246900.453905.773704.71250HepG2CALR
USP13ENSG00000058056.4584.866201757.17460-1.5871026.4451023.69980HepG2CCAR1
USP13ENSG00000058056.41332.942102233.13730-0.744504.974502.37720HepG2CDC40
USP13ENSG00000058056.4741.770102564.77450-1.7898049.6092047.04340HepG2CIRBP
USP13ENSG00000058056.41135.015701829.74220-0.6889020.1531018.72170HepG2CKAP4
USP13ENSG00000058056.4855.825002282.22730-1.4151017.4580015.59570HepG2CNOT7
USP13ENSG00000058056.4579.00340961.03770-0.731007.794006.68960HepG2CPSF6
USP13ENSG00000058056.41750.473001291.391400.438702.686301.59790HepG2CPSF7
USP13ENSG00000058056.41571.688701932.66790-0.298303.479902.77640HepG2CELF1
USP13ENSG00000058056.43105.262302078.004100.5794014.9322013.45250HepG2DAZAP1
USP13ENSG00000058056.4997.844101692.59590-0.7624022.7745020.94400HepG2DDX19B
USP13ENSG00000058056.4520.188501389.35090-1.4173032.5949030.65420HepG2DDX21
USP13ENSG00000058056.4594.712301359.77550-1.1931026.7279024.28180HepG2DDX24
USP13ENSG00000058056.41047.451203125.25200-1.5771038.7746036.71310HepG2DDX3X
USP13ENSG00000058056.42857.796902206.958500.372703.631402.15340HepG2DDX47
USP13ENSG00000058056.4826.881501106.37480-0.420102.566501.81780HepG2DDX55
USP13ENSG00000058056.41652.511401091.332400.598503.143602.10180HepG2DDX59
USP13ENSG00000058056.4978.272201386.17550-0.502804.764203.45950HepG2DDX5
USP13ENSG00000058056.41274.261202685.08610-1.0753016.4455015.10360HepG2DDX6
USP13ENSG00000058056.41534.023701172.327000.387803.540402.43820HepG2DHX30
USP13ENSG00000058056.4561.824601750.91600-1.6399070.9065068.73680HepG2DKC1
USP13ENSG00000058056.4660.969701199.83390-0.860209.475607.89640HepG2EEF2
USP13ENSG00000058056.41976.821302580.81170-0.384603.100902.47410HepG2EIF2S1
USP13ENSG00000058056.4679.256101312.14350-0.9499017.9370015.70940HepG2EIF3G
USP13ENSG00000058056.4673.791002851.89390-2.0815054.5103051.77120HepG2EIF4A3
USP13ENSG00000058056.41532.968202777.11290-0.857308.867307.67170HepG2EIF4B
USP13ENSG00000058056.42626.323302050.154700.357206.001804.85390HepG2EIF4G1
USP13ENSG00000058056.4822.807401358.62420-0.723507.880706.17080HepG2ESF1
USP13ENSG00000058056.41639.572302652.08080-0.693804.760204.01030HepG2ETF1
USP13ENSG00000058056.41215.379901788.36960-0.557207.511006.13950HepG2EWSR1
USP13ENSG00000058056.42415.839701324.101100.8674017.3710014.99520HepG2FASTKD2
USP13ENSG00000058056.4829.680301583.99220-0.932909.320208.01570HepG2FIP1L1
USP13ENSG00000058056.41114.315102878.06600-1.3689030.7293028.73750HepG2FXR1
USP13ENSG00000058056.41888.711302669.49970-0.499204.553103.70800HepG2G3BP1
USP13ENSG00000058056.41120.904802834.44550-1.3384030.4565027.76700HepG2G3BP2
USP13ENSG00000058056.4485.28080867.29890-0.837709.271007.68090HepG2GEMIN5
USP13ENSG00000058056.4805.529901397.95660-0.795309.315007.40660HepG2GNB2L1
USP13ENSG00000058056.4426.385401089.38190-1.3533020.4103018.84600HepG2GPKOW
USP13ENSG00000058056.4918.764702112.65430-1.2013014.5701012.07570HepG2GRSF1
USP13ENSG00000058056.42359.168701610.910600.550302.925301.50510HepG2HLTF
USP13ENSG00000058056.41411.555201929.72600-0.451102.772201.39840HepG2HNRNPA0
USP13ENSG00000058056.4460.284201227.11960-1.4147030.0483028.34160HepG2HNRNPA1
USP13ENSG00000058056.42330.185601909.787900.286903.984002.89540HepG2HNRNPA2B1
USP13ENSG00000058056.41226.358701884.41800-0.619705.247603.28880HepG2HNRNPAB
USP13ENSG00000058056.4768.355901364.94690-0.8290012.1279010.76830HepG2HNRNPC
USP13ENSG00000058056.41600.342102703.87740-0.7566011.8984010.54970HepG2HNRNPK
USP13ENSG00000058056.41601.431301892.87580-0.241203.281902.55260HepG2HNRNPL
USP13ENSG00000058056.4747.394201039.61980-0.476103.693802.97690HepG2HNRNPLL
USP13ENSG00000058056.4763.798001092.57290-0.516505.436604.15120HepG2HNRNPM
USP13ENSG00000058056.4838.629001355.92250-0.6932014.7253013.41920HepG2HNRNPU
USP13ENSG00000058056.42142.019902888.76950-0.431502.914701.64780HepG2HSPD1
USP13ENSG00000058056.41159.490702713.37120-1.2266025.3816023.58530HepG2IGF2BP2
USP13ENSG00000058056.41665.627501385.029400.266004.048603.17900HepG2ILF2
USP13ENSG00000058056.41391.091902174.51170-0.644505.836404.00970HepG2KHDRBS1
USP13ENSG00000058056.42034.840502729.40630-0.423702.845801.82870HepG2KHSRP
USP13ENSG00000058056.41919.794101672.964000.198402.446701.48630HepG2KIF1C
USP13ENSG00000058056.41790.185502886.29810-0.689105.858704.02970HepG2KRR1
USP13ENSG00000058056.41252.622201855.32490-0.566704.375903.32530HepG2LARP4
USP13ENSG00000058056.4800.856001438.08650-0.8445012.295009.90120HepG2LIN28B
USP13ENSG00000058056.4861.212702879.07360-1.7412045.2837042.90950HepG2MAGOH
USP13ENSG00000058056.4798.508101159.78290-0.538504.672002.62750HepG2MARK2
USP13ENSG00000058056.41127.611202895.08580-1.3603026.2592024.49120HepG2MATR3
USP13ENSG00000058056.4708.854901019.49440-0.524302.459501.46560HepG2METAP2
USP13ENSG00000058056.4593.632901281.48140-1.1102015.1638013.43630HepG2MSI2
USP13ENSG00000058056.4775.790901060.34100-0.450802.182201.32930HepG2MTPAP
USP13ENSG00000058056.41160.969102963.19870-1.3518028.0751026.21440HepG2NCBP2
USP13ENSG00000058056.4671.91910921.84300-0.456203.363902.53930HepG2NSUN2
USP13ENSG00000058056.4932.421001342.12710-0.525508.665707.30320HepG2PARN
USP13ENSG00000058056.41171.241402524.78540-1.1081029.6515028.02520HepG2PCBP1
USP13ENSG00000058056.4553.50370805.51530-0.541303.761002.32320HepG2PKM
USP13ENSG00000058056.4909.022501209.37400-0.411904.884703.93420HepG2PPIL4
USP13ENSG00000058056.4813.258901350.07860-0.7313015.2221013.63720HepG2PRPF4
USP13ENSG00000058056.4539.903401674.84250-1.633307.351905.45580HepG2PRPF6
USP13ENSG00000058056.4523.63550853.48420-0.704806.291405.12600HepG2PRPF8
USP13ENSG00000058056.41218.942902569.21960-1.0757027.0935025.72480HepG2PTBP1
USP13ENSG00000058056.4764.639401966.99910-1.3631036.1889034.33940HepG2PUF60
USP13ENSG00000058056.41737.015202088.08500-0.265604.050303.36260HepG2PUM1
USP13ENSG00000058056.41044.811702086.54200-0.9979024.9563023.06620HepG2PUM2
USP13ENSG00000058056.41070.186101864.07630-0.8006024.6191023.12250HepG2PUS1
USP13ENSG00000058056.42368.197902782.19570-0.232402.146901.58490HepG2QKI
USP13ENSG00000058056.43060.019202021.890700.5977011.127609.58690HepG2RBM15
USP13ENSG00000058056.41306.565602216.70610-0.762604.652404.02570HepG2RBM22
USP13ENSG00000058056.41117.062501651.36170-0.563905.564604.14420HepG2RBM27
USP13ENSG00000058056.4937.037201340.97700-0.517103.896702.63390HepG2RCC2
USP13ENSG00000058056.4852.620502859.16510-1.7456051.0517049.40920HepG2NELFE
USP13ENSG00000058056.41230.559802663.15890-1.1138026.0481024.49890HepG2RECQL
USP13ENSG00000058056.4812.087801254.24950-0.627106.201705.23540HepG2RPLP0
USP13ENSG00000058056.4484.93630947.74620-0.9667011.5895010.43660HepG2RPS19
USP13ENSG00000058056.4811.203201523.02340-0.9088013.3748011.71150HepG2RPS2
USP13ENSG00000058056.41162.218802291.57820-0.9795011.299509.72570HepG2RPS3A
USP13ENSG00000058056.42826.297202157.923300.389202.576501.31210HepG2SART3
USP13ENSG00000058056.4782.656901594.26280-1.0264011.192609.77560HepG2SF3A3
USP13ENSG00000058056.4810.476001029.00140-0.344402.419501.75790HepG2SF3B1
USP13ENSG00000058056.41672.660102674.60940-0.6772014.7748013.57340HepG2SF3B4
USP13ENSG00000058056.4962.530801408.15400-0.5489011.9300010.74080HepG2SMN1
USP13ENSG00000058056.4951.936101565.58750-0.717803.097202.07780HepG2SMNDC1
USP13ENSG00000058056.4624.544801144.95050-0.874404.681403.65390HepG2SNRNP70
USP13ENSG00000058056.41361.250702791.82740-1.0363027.2131026.06510HepG2SRSF1
USP13ENSG00000058056.41597.536301143.820100.481907.816306.74450HepG2SRSF7
USP13ENSG00000058056.41325.468602271.39860-0.7771017.3132016.14740HepG2SRSF9
USP13ENSG00000058056.4661.894502174.05900-1.7157017.0078015.96130HepG2SSB
USP13ENSG00000058056.4893.864401993.37860-1.1571015.7980013.01680HepG2STIP1
USP13ENSG00000058056.41539.696502208.74090-0.5206012.5455011.38340HepG2SUCLG1
USP13ENSG00000058056.4501.180801101.38060-1.1359014.5629013.22130HepG2SUPV3L1
USP13ENSG00000058056.41524.678002509.72020-0.7190013.2556012.16570HepG2TAF15
USP13ENSG00000058056.4818.116901013.38500-0.308801.951301.32890HepG2TARDBP
USP13ENSG00000058056.41175.714502826.57990-1.265509.419307.58390HepG2TBRG4
USP13ENSG00000058056.4493.850501317.51990-1.4157038.3493036.88320HepG2TIAL1
USP13ENSG00000058056.4652.079001329.31060-1.0276029.1601027.57000HepG2TRIM56
USP13ENSG00000058056.41335.378701921.72150-0.525206.940105.45760HepG2TUFM
USP13ENSG00000058056.43460.798602034.142600.7666010.004708.37210HepG2UBE2L3
USP13ENSG00000058056.4439.11820650.62050-0.567204.207303.27100HepG2UCHL5
USP13ENSG00000058056.4710.192101413.87350-0.9934011.163509.93220HepG2UPF1
USP13ENSG00000058056.4463.496101008.53150-1.1216010.612708.59590HepG2UPF2
USP13ENSG00000058056.4441.814001365.03000-1.6274029.5058027.86570HepG2UTP3
USP13ENSG00000058056.42263.893601511.413800.582803.904502.39780HepG2XRCC5
USP13ENSG00000058056.4987.049501690.72510-0.776402.858801.78440HepG2XRCC6
USP13ENSG00000058056.4535.632401084.18840-1.0173013.2647011.69860HepG2XRN2
USP13ENSG00000058056.4899.776701332.30650-0.5663010.567809.39680HepG2ZC3H8
USP13ENSG00000058056.41843.022501554.981600.245101.894301.41870HepG2ZNF622
USP13ENSG00000058056.411.5589031.93650-1.466202.186001.33030K562BCLAF1
USP13ENSG00000058056.422.5161050.87360-1.176002.468601.36810K562CCDC124
USP13ENSG00000058056.439.8097080.83230-1.021802.432701.52000K562CELF1
USP13ENSG00000058056.411.5903036.57110-1.657802.812701.95660K562FIP1L1
USP13ENSG00000058056.478.7644037.322401.077403.379702.44450K562MAGOH
USP13ENSG00000058056.413.1971038.34810-1.538902.529301.36240K562PABPC1
USP13ENSG00000058056.415.2916041.51280-1.440802.924902.07850K562PPIG
USP13ENSG00000058056.412.6219043.93220-1.799303.096002.52720K562PUS1
USP13ENSG00000058056.465.4058026.688201.293102.870402.03700K562RPS19
USP13ENSG00000058056.476.3051030.128501.340604.129203.12020K562SYNCRIP
USP13ENSG00000058056.410.4799035.97720-1.779503.291702.51850K562TARDBP
USP13ENSG00000058056.414.4171040.34720-1.484702.768701.49960K562TROVE2
USP13ENSG00000058056.420.6686062.06940-1.586404.018102.94530K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USP13 is not available on ENCORE database.





7 RBPs can affect the splicing of USP13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSP13ENSG00000058056.4chr3+179399665179399791179370542179371181179408028179408089-0.198000.000090.01371excludedHepG2DDX59
SEUSP13ENSG00000058056.4chr3+179408028179408089179370542179371181179418795179418917-0.330000.003260.03760excludedHepG2U2AF2
SEUSP13ENSG00000058056.4chr3+1794285011794286271794265601794267451794377271794378220.226000.001070.07363includedHepG2DDX3X
SEUSP13ENSG00000058056.4chr3+1794080281794080891793996651793997911794247211794248640.080000.000240.01537includedHepG2SFPQ
SEUSP13ENSG00000058056.4chr3+179418795179418917179399665179399791179424721179424864-0.379000.000040.00920excludedHepG2PCBP2
SEUSP13ENSG00000058056.4chr3+179483482179483636179481789179481956179499526179499611-0.057000.001980.04373excludedHepG2SRSF1
MXEUSP13ENSG00000058056.4chr3+1794080281794080891794187951794189171793996651793997911794247211794248640.183000.011780.089691includedHepG2SFPQ
MXEUSP13ENSG00000058056.4chr3+1793996651793997911794080281794080891793705421793711811794187951794189170.208000.019660.091431includedHepG2U2AF2
MXEUSP13ENSG00000058056.4chr3+179483482179483636179499526179499629179481789179481956179501835179507189-0.077000.009450.051482includedHepG2U2AF2
MXEUSP13ENSG00000058056.4chr3+1794080281794080891794187951794189171793705421793711811794247211794248640.140000.000110.014671includedHepG2DDX59
MXEUSP13ENSG00000058056.4chr3+1793996651793997911794187951794189171793705421793711811794247211794248640.348000.000290.034481includedHepG2SSB
MXEUSP13ENSG00000058056.4chr3+1793996651793997911794187951794189171793705421793711811794247211794248640.283000.000400.042621includedHepG2PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USP13 is not avaliable on ENCORE database.