ZFYVE16

General Information

Gene Name       : ZFYVE16
Gene ID             : ENSG00000039319.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZFYVE16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZFYVE16ENSG00000039319.167.155.556.35ENCSR000AEF
HepG2ZFYVE16ENSG00000039319.169.0917.0213.05ENCSR985KAT
K562ZFYVE16ENSG00000039319.167.788.147.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZFYVE16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZFYVE16 RNA is bound by 13 proteins.  







eCLIP assay for ZFYVE16 is not avaliable on ENCORE database.





13 proteins are bound to ZFYVE16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr57977061179770656+3'-UTR,CDS,intron-Proximal3.846594.09885HepG2BCLAF1
chr57977396179774077+3'-UTR4.4686522.65608HepG2U2AF2
chr57977398479774075+3'-UTR4.333195.73303K562U2AF2
chr57973262379732736+3'-UTR,CDS3.320733.63681K562RBM15
chr57973296479733075+3'-UTR,CDS3.6537610.26109HepG2BCLAF1
chr57976963279769678+3'-UTR,CDS3.819364.51739HepG2BCLAF1
chr57974544779745530+3'-UTR,CDS3.9310510.78406HepG2BCLAF1
chr57977412479774153+3'-UTR4.566614.12401HepG2U2AF2
chr57974391479743977+3'-UTR,CDS,intron-Distal3.366355.40132HepG2BCLAF1
chr57977308079773145+3'-UTR,CDS3.771133.46958K562YBX3
chr57974540779745447+3'-UTR,CDS,intron-Proximal3.176663.71797HepG2BCLAF1
chr57973281379732851+3'-UTR,CDS4.130013.55983HepG2HLTF
chr57974625779746315+3'-UTR,CDS3.792146.36847HepG2BCLAF1
chr57977061179770699+3'-UTR,CDS,intron-Proximal4.012783.66668K562KHSRP
chr57974384579743894+3'-UTR,CDS,intron-Distal3.716857.23562HepG2BCLAF1
chr57970383579704058+5'-UTR,intron-Proximal4.645526.39257HepG2NCBP2
chr57974111179741230+5'-UTR,CDS,intron-Proximal4.0557114.52112HepG2BCLAF1
chr57973575479735858+CDS,intron-Proximal4.5337811.11870HepG2BCLAF1
chr57973372979733780+CDS4.276507.82199HepG2BCLAF1
chr57974737579747472+CDS3.918069.08790HepG2BCLAF1
chr57973899779739104+CDS,intron-Proximal3.635783.22721K562YBX3
chr57973322379733279+CDS4.329224.15341HepG2ZC3H11A
chr57973893579739004+CDS,intron-Proximal3.872203.28461K562BUD13
chr57976957379769623+CDS5.007556.13315HepG2BCLAF1
chr57975276179752819+CDS,intron-Proximal4.424597.09561HepG2BCLAF1
chr57973347979733525+CDS3.568354.45817HepG2HLTF
chr57974638179746402+CDS4.261623.45943HepG2BCLAF1
chr57975286079752913+CDS,intron-Proximal3.530345.79905HepG2BCLAF1
chr57976867079768738+CDS,intron-Distal3.796396.81385HepG2BCLAF1
chr57973895279739097+CDS3.1257611.99371HepG2BCLAF1
chr57974632479746381+CDS3.523407.42278HepG2BCLAF1
chr57975228979752385+CDS,intron-Proximal6.0942912.56307HepG2BCLAF1
chr57973470679734764+CDS3.941833.15006K562RBM15
chr57974749079747532+CDS,intron-Proximal3.723044.51739HepG2BCLAF1
chr57973891979738998+CDS,intron-Proximal4.484867.29386HepG2U2AF2
chr57973583879735887+CDS,intron-Proximal4.927654.75655HepG2PRPF8
chr57975262279752680+intron-Distal,intron-Proximal4.509678.58031HepG2U2AF2
chr57974855179748710+intron-Distal3.106285.40698K562KHSRP
chr57971092779710990+intron-Distal4.570305.04769HepG2PTBP1
chr57974359479743681+intron-Distal4.852544.51735HepG2QKI
chr57975573379755848+intron-Distal4.002263.75546HepG2KHSRP
chr57971802979718118+intron-Distal3.410703.43875K562EXOSC5
chr57975570779755790+intron-Distal4.012783.66668K562KHSRP
chr57974343079743487+intron-Distal3.628814.58716HepG2QKI
chr57970628279706354+intron-Distal3.860353.02234K562KHSRP
chr57973593879735994+intron-Distal,intron-Proximal4.520053.77802HepG2U2AF2
chr57971398479714102+intron-Distal5.275855.39854K562PTBP1
chr57975256279752644+intron-Distal4.114713.42844K562KHSRP
chr57975307979753131+intron-Distal4.447863.77802HepG2U2AF2
chr57971398879714127+intron-Distal6.1098618.58569HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZFYVE16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZFYVE16 is not available on ENCORE database.

  • 77 RBPs can affect the levels of ZFYVE16.  








The Knockdown/knockout RNA-Seq assay for ZFYVE16 is not available on ENCORE database.





77 RBPs can affect the gene expression of ZFYVE16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZFYVE16ENSG00000039319.12792.634901026.54720-0.373102.612401.64210HepG2ADAR
ZFYVE16ENSG00000039319.121018.643901416.91770-0.476103.480102.59990HepG2ASCC1
ZFYVE16ENSG00000039319.12649.630901092.05280-0.749402.711601.78490HepG2BCCIP
ZFYVE16ENSG00000039319.121152.622501412.86410-0.293702.061701.53960HepG2BOP1
ZFYVE16ENSG00000039319.121874.627901322.725700.503002.766302.00160HepG2CNOT7
ZFYVE16ENSG00000039319.12735.358901052.70900-0.517606.693505.12000HepG2YBX3
ZFYVE16ENSG00000039319.121035.769801260.08160-0.282803.141902.25780HepG2DDX19B
ZFYVE16ENSG00000039319.121134.64360914.997000.310302.341301.50840HepG2DDX24
ZFYVE16ENSG00000039319.12870.337501640.46170-0.914508.708207.65210HepG2DDX3X
ZFYVE16ENSG00000039319.12844.150001408.91610-0.739007.184306.22810HepG2DDX6
ZFYVE16ENSG00000039319.12874.706701033.68680-0.240901.911901.31560HepG2DNAJC21
ZFYVE16ENSG00000039319.12730.597601024.55110-0.487807.789106.76690HepG2DNAJC2
ZFYVE16ENSG00000039319.121006.656601331.43890-0.403403.714702.74800HepG2EWSR1
ZFYVE16ENSG00000039319.121051.24410725.406000.535103.218402.37510HepG2FUBP3
ZFYVE16ENSG00000039319.121150.347201510.24550-0.392702.581601.91370HepG2FXR1
ZFYVE16ENSG00000039319.12914.145101470.39730-0.685706.849505.87000HepG2GPKOW
ZFYVE16ENSG00000039319.121016.468001231.70920-0.277102.711002.00080HepG2HNRNPF
ZFYVE16ENSG00000039319.121012.624901418.33590-0.486104.036503.20650HepG2HNRNPK
ZFYVE16ENSG00000039319.12878.253901323.96760-0.592204.319103.49010HepG2HNRNPL
ZFYVE16ENSG00000039319.12812.318501153.12370-0.505407.802206.82250HepG2HNRNPU
ZFYVE16ENSG00000039319.121003.808301212.88570-0.273001.970801.35170HepG2IGF2BP1
ZFYVE16ENSG00000039319.12970.623301177.87810-0.279203.404002.59660HepG2ILF2
ZFYVE16ENSG00000039319.121015.284101245.49000-0.294803.714402.53340HepG2KIF1C
ZFYVE16ENSG00000039319.12814.092401555.13200-0.933809.346908.22290HepG2NCBP2
ZFYVE16ENSG00000039319.121025.573301441.07770-0.490703.493602.63750HepG2NOL12
ZFYVE16ENSG00000039319.121043.662501385.18870-0.408402.036301.40860HepG2PABPC4
ZFYVE16ENSG00000039319.12960.821001141.39830-0.248502.261401.48840HepG2PARN
ZFYVE16ENSG00000039319.121106.718801306.90050-0.239902.378201.80660HepG2PCBP1
ZFYVE16ENSG00000039319.12712.286101028.49460-0.530006.957605.82880HepG2PPIL4
ZFYVE16ENSG00000039319.121042.17830828.705200.330602.090301.38420HepG2PRPF8
ZFYVE16ENSG00000039319.121141.282901329.78770-0.220501.910801.44010HepG2PTBP1
ZFYVE16ENSG00000039319.12770.027101375.52990-0.837009.216408.21480HepG2PUF60
ZFYVE16ENSG00000039319.121003.997201387.69190-0.466908.043707.08510HepG2PUS1
ZFYVE16ENSG00000039319.121787.985001440.262000.311903.130402.47240HepG2QKI
ZFYVE16ENSG00000039319.121200.659601479.95300-0.301703.433502.84420HepG2NELFE
ZFYVE16ENSG00000039319.12617.10060824.58230-0.418202.539801.94850HepG2RPS19
ZFYVE16ENSG00000039319.12805.796901026.90920-0.349803.268302.57870HepG2SAFB2
ZFYVE16ENSG00000039319.12939.860201197.55220-0.349604.827504.01610HepG2SMN1
ZFYVE16ENSG00000039319.121927.487301445.135000.415406.892906.22860HepG2SRSF1
ZFYVE16ENSG00000039319.12814.421901154.16340-0.503002.503801.46640HepG2STIP1
ZFYVE16ENSG00000039319.121374.312801068.918600.362501.879401.30770HepG2SUPV3L1
ZFYVE16ENSG00000039319.121700.967801298.877900.389004.806604.10080HepG2TAF15
ZFYVE16ENSG00000039319.12828.743501120.48490-0.435104.644704.03130HepG2TIAL1
ZFYVE16ENSG00000039319.12662.212901130.49070-0.7716016.2306015.01970HepG2TRIM56
ZFYVE16ENSG00000039319.12808.080001117.85200-0.468203.703602.98010HepG2U2AF1
ZFYVE16ENSG00000039319.12804.073701466.44130-0.866902.327401.43080HepG2U2AF2
ZFYVE16ENSG00000039319.121573.633401115.178900.496702.986901.67300HepG2XRCC5
ZFYVE16ENSG00000039319.12596.493401052.22880-0.818903.195802.41890HepG2XRN2
ZFYVE16ENSG00000039319.121181.26380908.861000.378105.166404.29740HepG2ZC3H8
ZFYVE16ENSG00000039319.12652.71120994.87100-0.608108.922907.97880K562AGGF1
ZFYVE16ENSG00000039319.12831.269101035.20540-0.316502.161501.58120K562AKAP8L
ZFYVE16ENSG00000039319.121107.325301380.11680-0.317702.547801.35900K562APOBEC3C
ZFYVE16ENSG00000039319.12942.592501304.51210-0.468804.369203.66350K562AQR
ZFYVE16ENSG00000039319.12205.15090299.62720-0.546502.720901.67770K562CCAR1
ZFYVE16ENSG00000039319.12961.609201188.93510-0.306102.465401.36690K562CCDC124
ZFYVE16ENSG00000039319.12944.362401237.98690-0.390604.956204.12020K562DDX47
ZFYVE16ENSG00000039319.12568.63470718.20340-0.336902.483901.72910K562EIF3G
ZFYVE16ENSG00000039319.12477.75940737.27400-0.625907.567505.51260K562EIF4B
ZFYVE16ENSG00000039319.121289.563801564.04800-0.278402.302601.44080K562EIF4G2
ZFYVE16ENSG00000039319.12555.88450714.63160-0.362402.662401.39890K562EWSR1
ZFYVE16ENSG00000039319.12575.36930741.94720-0.366802.371001.58660K562FIP1L1
ZFYVE16ENSG00000039319.121274.83220870.099900.551003.884303.01290K562G3BP2
ZFYVE16ENSG00000039319.12395.84050608.47230-0.620305.204904.40990K562HNRNPC
ZFYVE16ENSG00000039319.12720.76280986.21670-0.452402.460101.30320K562HNRNPK
ZFYVE16ENSG00000039319.12439.46250610.28160-0.473702.757301.82970K562HNRNPM
ZFYVE16ENSG00000039319.12662.86850873.11250-0.397403.812802.76210K562HNRNPU
ZFYVE16ENSG00000039319.12657.534001035.58110-0.655305.209603.89190K562MATR3
ZFYVE16ENSG00000039319.12797.29280966.81330-0.278102.864602.10690K562NSUN2
ZFYVE16ENSG00000039319.12433.66540761.96820-0.813103.868302.64320K562PABPN1
ZFYVE16ENSG00000039319.12557.58320842.28490-0.595105.459604.24370K562PPIG
ZFYVE16ENSG00000039319.12362.33700545.53790-0.590303.966902.85610K562PSIP1
ZFYVE16ENSG00000039319.12714.316301008.05200-0.496903.499302.76320K562PTBP1
ZFYVE16ENSG00000039319.121105.519201706.52040-0.626307.375106.03880K562PUF60
ZFYVE16ENSG00000039319.12805.692201026.66110-0.349702.401101.88770K562PUS1
ZFYVE16ENSG00000039319.12783.022401000.30890-0.353303.136402.51090K562RBM15
ZFYVE16ENSG00000039319.12674.89470966.90840-0.518703.485402.53670K562RBM22
ZFYVE16ENSG00000039319.12361.74780497.63010-0.460102.954401.92840K562RCC2
ZFYVE16ENSG00000039319.12627.675501017.44460-0.696905.496403.88010K562NELFE
ZFYVE16ENSG00000039319.12441.58940640.11310-0.535603.367002.25430K562RPS3
ZFYVE16ENSG00000039319.12588.47190904.96420-0.620907.638506.17390K562SF3B4
ZFYVE16ENSG00000039319.12439.509501000.22230-1.1864011.7216010.10050K562TARDBP
ZFYVE16ENSG00000039319.12685.32800964.79160-0.493403.542802.59970K562TIA1
ZFYVE16ENSG00000039319.12284.78010524.72860-0.881707.418105.82850K562TIAL1
ZFYVE16ENSG00000039319.12733.78150946.42580-0.367102.530401.49580K562TRA2A
ZFYVE16ENSG00000039319.12405.45200557.34190-0.459003.062902.05730K562TRIM56
ZFYVE16ENSG00000039319.12586.73860912.17500-0.6366010.660909.12640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZFYVE16 is not available on ENCORE database.





10 RBPs can affect the splicing of ZFYVE16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZFYVE16ENSG00000039319.12chr5+7973692179737068797357547973585179738941797391030.102000.005440.08100includedK562SRSF1
SEZFYVE16ENSG00000039319.12chr5+7973671979736774797357547973585179738941797391030.189000.006260.09020includedHepG2U2AF1
SEZFYVE16ENSG00000039319.12chr5+797438447974422379741081797412247974540979745532-0.207000.005430.08111excludedHepG2U2AF1
SEZFYVE16ENSG00000039319.12chr5+7973961279739739797389707973910379741081797412240.125000.000200.05068includedHepG2ILF3
SEZFYVE16ENSG00000039319.12chr5+7973961279739739797390217973910379741081797412240.298000.000000.00001includedHepG2HNRNPK
SEZFYVE16ENSG00000039319.12chr5+7973961279739739797390217973910379741081797412240.222000.000290.02978includedHepG2TBRG4
SEZFYVE16ENSG00000039319.12chr5+797438447974422379741081797412247974540979745532-0.099000.004590.04331excludedK562AQR
SEZFYVE16ENSG00000039319.12chr5+7972331079723364797038447970397279729927797300360.421000.003390.09690includedK562FXR1
SEZFYVE16ENSG00000039319.12chr5+797438447974422379741081797412247974540979745532-0.198000.004940.06168excludedK562PUS1
SEZFYVE16ENSG00000039319.12chr5+7972331079723364797038447970397279729927797300360.254000.000580.04028includedHepG2FTO
SEZFYVE16ENSG00000039319.12chr5+7970746479707592797038427970397279729927797300360.488000.000320.01634includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZFYVE16 is not avaliable on ENCORE database.