GINM1

General Information

Gene Name       : GINM1
Gene ID             : ENSG00000055211.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GINM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GINM1ENSG00000055211.1322.8120.9921.90ENCSR000AEF
HepG2GINM1ENSG00000055211.1312.4325.6919.06ENCSR985KAT
K562GINM1ENSG00000055211.1310.9710.3610.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GINM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GINM1 RNA is bound by 7 proteins.  







eCLIP assay for GINM1 is not avaliable on ENCORE database.





7 proteins are bound to GINM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6149912124149912217+3'-UTR3.384996.51800HepG2UPF1
chr6149887547149887600+5'-UTR,CDS4.5555017.87419HepG2DDX3X
chr6149887528149887579+5'-UTR,CDS4.763674.11950K562DDX3X
chr6149903721149903812+CDS,intron-Proximal4.961814.47382K562EFTUD2
chr6149911875149911957+CDS4.144954.23295HepG2GRWD1
chr6149887600149887671+CDS,intron-Proximal5.4623926.09042HepG2DDX3X
chr6149887579149887670+CDS4.063404.46401K562DDX3X
chr6149893569149893691+CDS,intron-Proximal3.885546.59336K562KHSRP
chr6149903168149903232+CDS,intron-Distal,intron-Proximal4.2995411.25083HepG2U2AF2
chr6149902012149902090+intron-Distal3.156363.28806K562KHSRP
chr6149905991149906046+intron-Distal4.984203.96837K562XRCC6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GINM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GINM1 is not available on ENCORE database.

  • 81 RBPs can affect the levels of GINM1.  








The Knockdown/knockout RNA-Seq assay for GINM1 is not available on ENCORE database.





81 RBPs can affect the gene expression of GINM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GINM1ENSG00000055211.8873.83780554.614000.655806.662205.07510HepG2AATF
GINM1ENSG00000055211.8997.62910803.456200.312203.322202.66610HepG2ACO1
GINM1ENSG00000055211.82524.533001324.851200.9301012.1889011.15050HepG2AKAP1
GINM1ENSG00000055211.8913.10870653.214600.483103.340202.20340HepG2AKAP8
GINM1ENSG00000055211.8431.38450807.24750-0.9040016.4896014.82970HepG2AKAP8L
GINM1ENSG00000055211.81681.661601063.203400.6614014.6975013.33620HepG2AUH
GINM1ENSG00000055211.8946.81830529.190100.8392010.625209.55170HepG2BOP1
GINM1ENSG00000055211.8852.69680546.697800.641207.007905.12090HepG2BUD13
GINM1ENSG00000055211.81045.93550623.521500.746208.496707.24990HepG2CALR
GINM1ENSG00000055211.8269.25750485.82510-0.851506.987305.93410HepG2CPSF6
GINM1ENSG00000055211.81808.45590963.951900.9076023.3829021.89380HepG2CELF1
GINM1ENSG00000055211.8766.58540573.419800.418803.125901.90010HepG2DDX1
GINM1ENSG00000055211.8967.26310612.132800.660007.154906.11550HepG2DDX21
GINM1ENSG00000055211.82363.918901269.101400.8973013.0888011.82140HepG2DDX3X
GINM1ENSG00000055211.8616.55530463.188200.412502.760201.40690HepG2DDX52
GINM1ENSG00000055211.81074.35130551.690200.961406.665705.18230HepG2DDX59
GINM1ENSG00000055211.8738.55730542.307900.445502.732401.75320HepG2DHX30
GINM1ENSG00000055211.8421.62490562.28400-0.415303.243302.48650HepG2DNAJC21
GINM1ENSG00000055211.8918.21510563.527000.704205.517103.95700HepG2AGO1
GINM1ENSG00000055211.8559.504401158.17880-1.0496012.9442011.58910HepG2EIF4A3
GINM1ENSG00000055211.8337.431901127.66240-1.7407024.7400022.84430HepG2EIF4B
GINM1ENSG00000055211.8498.517801022.59180-1.036509.047607.70020HepG2EIF4G1
GINM1ENSG00000055211.82175.456701220.614300.8336025.4846023.97620HepG2ETF1
GINM1ENSG00000055211.8481.34110785.13790-0.705908.082106.66770HepG2EWSR1
GINM1ENSG00000055211.8581.01790400.943800.535104.505002.97890HepG2FAM120A
GINM1ENSG00000055211.8322.06070583.24270-0.856809.275307.39560HepG2FASTKD2
GINM1ENSG00000055211.81242.28430736.737500.753707.288906.10140HepG2FIP1L1
GINM1ENSG00000055211.81465.90470738.305200.989409.923707.98920HepG2FUS
GINM1ENSG00000055211.8976.43670723.610100.432202.849301.81380HepG2GNB2L1
GINM1ENSG00000055211.8781.95550550.720100.505703.312402.61680HepG2GPKOW
GINM1ENSG00000055211.81140.01370767.082700.571509.717708.03190HepG2HDGF
GINM1ENSG00000055211.81138.89330707.271100.687203.921702.25060HepG2HLTF
GINM1ENSG00000055211.81311.57480952.684300.461103.674802.62210HepG2HNRNPA2B1
GINM1ENSG00000055211.8537.64920682.45960-0.344102.830002.10420HepG2HNRNPF
GINM1ENSG00000055211.8858.360001097.68640-0.354802.444201.78570HepG2HNRNPK
GINM1ENSG00000055211.8666.04690525.562400.341701.833101.31060HepG2HNRNPLL
GINM1ENSG00000055211.8443.74920627.23440-0.499305.156704.34940HepG2HNRNPU
GINM1ENSG00000055211.81316.35760990.804100.409802.427501.65240HepG2LARP4
GINM1ENSG00000055211.8876.495401175.52150-0.423502.724202.09720HepG2MATR3
GINM1ENSG00000055211.81177.39730596.340900.9813016.6006014.81640HepG2MSI2
GINM1ENSG00000055211.81530.931401203.209000.347402.220901.65110HepG2NCBP2
GINM1ENSG00000055211.81578.752901071.523800.559005.222604.24200HepG2PABPC4
GINM1ENSG00000055211.8945.52180620.880500.606708.961507.57690HepG2PARN
GINM1ENSG00000055211.8724.56080559.446600.373003.186202.40010HepG2PPIL4
GINM1ENSG00000055211.81284.435301040.875400.303202.192801.59290HepG2PUM2
GINM1ENSG00000055211.81032.97470818.375200.335903.786903.08940HepG2PUS1
GINM1ENSG00000055211.8287.94380674.57960-1.228208.890907.67300HepG2RAVER1
GINM1ENSG00000055211.81564.657001042.829600.585207.757306.67810HepG2RBM25
GINM1ENSG00000055211.8518.977701180.73940-1.1859030.7467029.35500HepG2NELFE
GINM1ENSG00000055211.8486.691701099.68680-1.1760030.0066028.36880HepG2RECQL
GINM1ENSG00000055211.81001.08490662.489300.595503.550502.48210HepG2RPS10
GINM1ENSG00000055211.81171.82460743.289100.656705.119004.18280HepG2SF3A3
GINM1ENSG00000055211.8773.894201104.59720-0.513307.181806.30060HepG2SF3B4
GINM1ENSG00000055211.81912.93420578.816701.7245010.020808.54110HepG2SNRNP70
GINM1ENSG00000055211.81366.300001152.338600.245602.270901.80260HepG2SRFBP1
GINM1ENSG00000055211.81267.99200968.758900.388203.669002.96700HepG2SRSF5
GINM1ENSG00000055211.8670.418201000.55780-0.577706.206405.49470HepG2SSB
GINM1ENSG00000055211.8988.12350630.387900.648403.103301.82460HepG2SUB1
GINM1ENSG00000055211.81379.556201101.841300.324202.292101.71630HepG2SUCLG1
GINM1ENSG00000055211.8739.26530497.543700.571205.573904.26280HepG2SUPT6H
GINM1ENSG00000055211.8974.56830679.848200.519504.118703.31730HepG2SUPV3L1
GINM1ENSG00000055211.81219.922601036.305400.235201.919501.43760HepG2TAF15
GINM1ENSG00000055211.81138.12530512.262101.1516019.3628017.76750HepG2TARDBP
GINM1ENSG00000055211.81014.17690677.211900.582503.568701.90600HepG2TRA2A
GINM1ENSG00000055211.8805.86990614.918700.390104.002603.34870HepG2TRIM56
GINM1ENSG00000055211.8248.38590630.27300-1.3434016.8082015.20630HepG2U2AF1
GINM1ENSG00000055211.8270.71650401.64320-0.569103.098402.29740HepG2UCHL5
GINM1ENSG00000055211.8942.30660659.182300.515407.359806.31230HepG2UPF1
GINM1ENSG00000055211.8960.43850663.202700.534103.019501.69660HepG2XRCC5
GINM1ENSG00000055211.81110.13210724.976400.6146012.3299011.38240HepG2ZNF622
GINM1ENSG00000055211.81005.41940673.812700.577303.866702.31080HepG2ZRANB2
GINM1ENSG00000055211.8429.17370593.92180-0.468703.173802.47340K562AKAP8L
GINM1ENSG00000055211.8890.40230682.100200.384403.401002.07410K562CCDC124
GINM1ENSG00000055211.8266.84980374.08090-0.487302.831002.00020K562EIF4A3
GINM1ENSG00000055211.8228.39790336.86830-0.560603.875302.46930K562EIF4B
GINM1ENSG00000055211.8469.06130333.130600.493603.692802.10830K562FUS
GINM1ENSG00000055211.8599.54110366.073100.711604.820803.82730K562G3BP2
GINM1ENSG00000055211.8419.06660562.94850-0.425802.698101.94970K562GRSF1
GINM1ENSG00000055211.8227.26850328.28230-0.530502.754702.15900K562HNRNPC
GINM1ENSG00000055211.8386.72510490.90540-0.344102.223201.42340K562HNRNPU
GINM1ENSG00000055211.8595.77940445.223800.420102.462501.70810K562HSPD1
GINM1ENSG00000055211.8331.60330428.53610-0.370002.415901.65910K562MTPAP
GINM1ENSG00000055211.8255.54060457.68330-0.840807.275305.66110K562PCBP2
GINM1ENSG00000055211.8170.17480294.33340-0.790404.346003.17350K562PSIP1
GINM1ENSG00000055211.8260.76810504.33790-0.951609.422907.34720K562NELFE
GINM1ENSG00000055211.8244.10300371.75980-0.606903.850401.79030K562RECQL
GINM1ENSG00000055211.8437.07360269.400700.698003.957202.35800K562RRP9
GINM1ENSG00000055211.8252.34630380.69890-0.593204.342403.26380K562SF3B4
GINM1ENSG00000055211.8151.26590254.54500-0.750803.837002.56900K562SRFBP1
GINM1ENSG00000055211.8339.59430495.81500-0.546003.681502.86120K562TARDBP
GINM1ENSG00000055211.8275.20740366.51390-0.413302.331101.59530K562U2AF2
GINM1ENSG00000055211.8630.68380504.841100.321002.489001.80540K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GINM1 is not available on ENCORE database.





11 RBPs can affect the splicing of GINM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGINM1ENSG00000055211.8chr6+149893642149893739149893420149893480149899957149900109-0.083000.006280.08821excludedK562SF3B4
SEGINM1ENSG00000055211.8chr6+149899957149900085149893642149893739149900969149901126-0.085000.001700.03207excludedHepG2U2AF1
SEGINM1ENSG00000055211.8chr6+149899957149900109149893420149893480149900969149901126-0.081000.000100.00199excludedHepG2U2AF2
SEGINM1ENSG00000055211.8chr6+149893642149893739149893420149893480149899957149900109-0.135000.000270.00767excludedK562U2AF1
SEGINM1ENSG00000055211.8chr6+149899957149900109149893642149893739149900969149901126-0.061000.000440.03597excludedHepG2TIAL1
SEGINM1ENSG00000055211.8chr6+149893642149893739149893420149893480149899957149900109-0.270000.000000.00001excludedK562U2AF2
A3SSGINM1ENSG00000055211.8chr6+1498999331499001091498999571499001091498935661498937390.059000.000150.00125longerK562AQR
MXEGINM1ENSG00000055211.8chr6+149893642149893739149899957149900109149893420149893480149900969149901126-0.248000.002010.029172includedK562DROSHA
MXEGINM1ENSG00000055211.8chr6+1498934201498934801498999571499001091498874291498876701499009691499011260.142000.007310.073961includedK562U2AF2
MXEGINM1ENSG00000055211.8chr6+1498934201498934801498999571499001091498874291498876701499009691499011260.232000.000010.000881includedK562TARDBP
MXEGINM1ENSG00000055211.8chr6+1498934201498934801498999571499001091498874291498876701499009691499011260.129000.000010.000081includedHepG2U2AF2
MXEGINM1ENSG00000055211.8chr6+149893642149893739149899957149900109149893420149893480149900969149901126-0.176000.005270.089202includedK562SBDS
MXEGINM1ENSG00000055211.8chr6+1498934201498934801498936421498937391498874291498876701498999571499001090.108000.000050.015281includedK562NPM1
MXEGINM1ENSG00000055211.8chr6+1499017281499018591499035751499037391498936421498937391499118621499128840.186000.005410.085211includedK562SUPV3L1
MXEGINM1ENSG00000055211.8chr6+1498934201498934801498999571499001091498874291498876701499009691499011260.168000.000430.013841includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GINM1 is not avaliable on ENCORE database.