THUMPD1

General Information

Gene Name       : THUMPD1
Gene ID             : ENSG00000066654.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: THUMPD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878THUMPD1ENSG00000066654.1328.0125.6726.84ENCSR000AEF
HepG2THUMPD1ENSG00000066654.1330.6339.0634.84ENCSR985KAT
K562THUMPD1ENSG00000066654.1339.0238.5838.80ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: THUMPD1THUMPD1cell-free sampleReleased






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
THUMPD1THUMPD1ReleasedENCODE4


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for THUMPD1 is not avaliable on ENCORE database.


  • The binding motifs of THUMPD1

    • Trulli

Proteins bound to RNA
  • THUMPD1 RNA is bound by 10 proteins.  







eCLIP assay for THUMPD1 is not avaliable on ENCORE database.





10 proteins are bound to THUMPD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162074906520749119-3'-UTR,CDS,intron-Distal3.650844.51739HepG2BCLAF1
chr162074515420745194-3'-UTR,intron-Distal4.252893.54010K562UPF1
chr162074738720747492-3'-UTR,intron-Distal3.758465.05222K562IGF2BP1
chr162074939920749471-3'-UTR,intron-Distal,intron-Proximal3.723513.25538K562KHSRP
chr162074725120747353-3'-UTR,intron-Distal3.688794.81657K562IGF2BP1
chr162074515120745216-3'-UTR,intron-Distal4.469454.12941K562DDX55
chr162074585620745923-3'-UTR,intron-Distal3.211664.61367K562UPF1
chr162074923920749283-3'-UTR,CDS,intron-Distal,intron-Proximal4.033163.28461K562BUD13
chr162075301720753112-5'-UTR,CDS,intron-Distal3.460936.65904HepG2GRWD1
chr162074823720748343-CDS,intron-Distal,intron-Proximal3.227156.50801HepG2BCLAF1
chr162075021020750381-CDS,intron-Distal,intron-Proximal3.0521611.16442K562UCHL5
chr162075015020750221-CDS,intron-Distal,intron-Proximal4.817888.69247K562AQR
chr162075013420750396-CDS,intron-Distal,intron-Proximal3.159828.66222HepG2GRWD1
chr162075018720750355-CDS,intron-Distal,intron-Proximal3.046558.33225HepG2BCLAF1
chr162074826020748331-CDS,intron-Distal,intron-Proximal4.574494.42734K562UCHL5
chr162075020420750387-CDS,intron-Distal,intron-Proximal3.100835.35460K562GRWD1
chr162075271620752818-intron-Distal4.072004.35952HepG2PRPF4
chr162074871820748784-intron-Distal3.689603.06150K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for THUMPD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for THUMPD1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of THUMPD1.  








The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.





91 RBPs can affect the gene expression of THUMPD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
THUMPD1ENSG00000066654.81717.350101488.200800.206502.237401.67910HepG2ACO1
THUMPD1ENSG00000066654.81001.267301362.71090-0.444703.804802.65760HepG2ADAR
THUMPD1ENSG00000066654.82978.152602342.642100.346202.310001.81950HepG2AKAP1
THUMPD1ENSG00000066654.81865.795301487.963500.326405.416504.54340HepG2CKAP4
THUMPD1ENSG00000066654.81803.391401342.261300.425902.118201.45480HepG2CNOT7
THUMPD1ENSG00000066654.81068.227501397.42570-0.387604.641403.32560HepG2YBX3
THUMPD1ENSG00000066654.8598.02100953.75950-0.673406.587905.03400HepG2CSTF2
THUMPD1ENSG00000066654.81404.614401927.48080-0.456503.378902.70370HepG2DDX6
THUMPD1ENSG00000066654.8605.885201372.21260-1.1794032.6838030.56410HepG2DNAJC21
THUMPD1ENSG00000066654.81126.863801360.02980-0.271303.427702.71600HepG2DNAJC2
THUMPD1ENSG00000066654.81205.275101853.28580-0.620705.816204.97420HepG2EIF2S1
THUMPD1ENSG00000066654.8723.925901073.43620-0.568303.367202.37490HepG2EIF3D
THUMPD1ENSG00000066654.8937.342101993.95240-1.0890012.4321011.02900HepG2EIF4B
THUMPD1ENSG00000066654.82552.536502068.132500.303503.993503.02130HepG2EIF4G1
THUMPD1ENSG00000066654.81350.512701981.18360-0.552906.640405.40600HepG2EIF4G2
THUMPD1ENSG00000066654.82293.189201759.999600.381702.755701.98780HepG2FIP1L1
THUMPD1ENSG00000066654.81490.755701202.135200.310302.565401.80730HepG2FUBP3
THUMPD1ENSG00000066654.81547.476302066.10260-0.417002.822602.12320HepG2FXR1
THUMPD1ENSG00000066654.81142.013001916.88390-0.747207.690806.60910HepG2G3BP1
THUMPD1ENSG00000066654.8484.68530955.78140-0.979609.601907.98780HepG2GEMIN5
THUMPD1ENSG00000066654.8550.310102129.88450-1.9525048.1625045.91840HepG2GPKOW
THUMPD1ENSG00000066654.8729.552401134.74010-0.637304.544402.75160HepG2HNRNPA0
THUMPD1ENSG00000066654.8351.990601385.35800-1.9767055.2154053.12430HepG2HNRNPA1
THUMPD1ENSG00000066654.8762.017601108.11870-0.540203.740402.10470HepG2HNRNPAB
THUMPD1ENSG00000066654.81524.897101897.06130-0.315104.120403.26350HepG2HNRNPF
THUMPD1ENSG00000066654.81667.533401909.89220-0.195802.287501.66610HepG2HNRNPL
THUMPD1ENSG00000066654.81306.223802032.58310-0.637907.488506.51120HepG2HNRNPLL
THUMPD1ENSG00000066654.81554.177801214.508100.355703.549302.48160HepG2HNRNPM
THUMPD1ENSG00000066654.81575.156901868.06720-0.246102.017001.39210HepG2IGF2BP1
THUMPD1ENSG00000066654.8963.966701828.25800-0.923404.588003.33130HepG2IGF2BP3
THUMPD1ENSG00000066654.81304.917101563.61090-0.260903.588502.76370HepG2ILF2
THUMPD1ENSG00000066654.81806.406601424.720600.342303.392602.49950HepG2MSI2
THUMPD1ENSG00000066654.8500.495101393.43710-1.4772013.8783011.30720HepG2NONO
THUMPD1ENSG00000066654.81175.077101588.56210-0.435004.179102.21380HepG2NUP35
THUMPD1ENSG00000066654.81355.308901894.99100-0.483603.877703.03390HepG2PABPC4
THUMPD1ENSG00000066654.81821.738101395.008500.384905.772904.69820HepG2PRPF4
THUMPD1ENSG00000066654.8895.293001171.20040-0.387602.252401.52060HepG2PRPF8
THUMPD1ENSG00000066654.81099.717002104.99310-0.9367023.2367021.41060HepG2PUM2
THUMPD1ENSG00000066654.82126.367101457.514000.544802.896202.17730HepG2RAVER1
THUMPD1ENSG00000066654.83004.802402326.109600.369305.393604.73030HepG2RBM22
THUMPD1ENSG00000066654.8739.227801277.09130-0.788807.960506.18240HepG2RCC2
THUMPD1ENSG00000066654.81905.346402155.46920-0.177901.780001.32570HepG2NELFE
THUMPD1ENSG00000066654.82117.907801431.371700.565103.633502.55190HepG2RPS10
THUMPD1ENSG00000066654.81614.785501158.592200.478904.106303.16950HepG2RRP9
THUMPD1ENSG00000066654.81379.696901589.75550-0.204501.938801.38490HepG2SMN1
THUMPD1ENSG00000066654.83182.129902627.231300.276304.495003.90070HepG2SRFBP1
THUMPD1ENSG00000066654.81511.025001863.78800-0.302703.848603.04780HepG2SRSF7
THUMPD1ENSG00000066654.82270.214401891.760800.263002.689002.13560HepG2TAF15
THUMPD1ENSG00000066654.8760.731101980.99490-1.3808032.3733030.41410HepG2TARDBP
THUMPD1ENSG00000066654.81144.975801500.69760-0.390305.884305.11610HepG2TRIM56
THUMPD1ENSG00000066654.81543.043101938.55640-0.329203.091702.16310HepG2TUFM
THUMPD1ENSG00000066654.82498.495601505.731600.7305010.727009.46990HepG2U2AF1
THUMPD1ENSG00000066654.82026.428401696.453600.256303.342302.58700HepG2UPF1
THUMPD1ENSG00000066654.8902.222301383.91600-0.617203.750702.56760HepG2UPF2
THUMPD1ENSG00000066654.82041.011601432.914100.510203.243601.86800HepG2XRCC5
THUMPD1ENSG00000066654.8798.569001487.46330-0.8974011.115809.68020HepG2XRN2
THUMPD1ENSG00000066654.81202.153801376.70470-0.195601.951401.37220HepG2ZC3H8
THUMPD1ENSG00000066654.81378.244901865.77260-0.436909.507208.64720HepG2ZNF622
THUMPD1ENSG00000066654.81773.563201362.632200.380203.588502.22530K562AARS
THUMPD1ENSG00000066654.83818.119803088.995100.305602.674601.45500K562APOBEC3C
THUMPD1ENSG00000066654.84963.701702753.951700.8498016.3881015.11870K562AQR
THUMPD1ENSG00000066654.81313.899801699.72630-0.371404.808102.99390K562BCCIP
THUMPD1ENSG00000066654.82242.824001683.449600.413803.247002.29980K562BOP1
THUMPD1ENSG00000066654.8552.23310749.86080-0.441303.218002.06260K562CCAR1
THUMPD1ENSG00000066654.8926.430301246.12580-0.427704.867703.40930K562CSTF2
THUMPD1ENSG00000066654.85192.119904303.779800.270603.521502.41820K562CELF1
THUMPD1ENSG00000066654.82627.769403010.02250-0.195902.219101.62540K562DDX47
THUMPD1ENSG00000066654.81283.313001596.53180-0.315103.413801.91990K562DDX6
THUMPD1ENSG00000066654.81026.776301488.13210-0.535402.442301.47660K562EIF3D
THUMPD1ENSG00000066654.81476.412301748.00250-0.243602.185201.47230K562EIF3G
THUMPD1ENSG00000066654.82813.320603500.65610-0.315404.167303.02090K562EIF4G2
THUMPD1ENSG00000066654.82020.012401710.900900.239502.500201.91870K562FXR1
THUMPD1ENSG00000066654.82430.126901770.811400.456503.120402.36130K562G3BP2
THUMPD1ENSG00000066654.8718.519201393.04850-0.955106.178704.06020K562GEMIN5
THUMPD1ENSG00000066654.81619.530202069.03030-0.353404.529403.07530K562GLRX3
THUMPD1ENSG00000066654.82005.962002825.04620-0.494004.554903.58750K562GRSF1
THUMPD1ENSG00000066654.8925.066101295.92990-0.486404.831802.18020K562GRWD1
THUMPD1ENSG00000066654.81028.025801833.02290-0.8343016.2574013.96360K562HNRNPA1
THUMPD1ENSG00000066654.81614.806002572.92520-0.672004.894902.80830K562HNRNPAB
THUMPD1ENSG00000066654.81066.998201331.56400-0.319602.444101.38360K562HNRNPF
THUMPD1ENSG00000066654.82285.283802938.75260-0.362803.412102.52920K562HSPD1
THUMPD1ENSG00000066654.81540.832402096.01530-0.443902.852401.63790K562IGF2BP3
THUMPD1ENSG00000066654.81914.845001459.264400.391902.397201.53640K562KRR1
THUMPD1ENSG00000066654.8986.563701512.22460-0.616206.366504.00760K562LIN28B
THUMPD1ENSG00000066654.81535.269202162.08270-0.493904.080002.94360K562MATR3
THUMPD1ENSG00000066654.82452.714402006.592700.289502.935601.99160K562MBNL1
THUMPD1ENSG00000066654.81671.437702175.31420-0.380106.482705.29310K562MTPAP
THUMPD1ENSG00000066654.8817.571201368.20880-0.742904.854103.00380K562NONO
THUMPD1ENSG00000066654.82169.346002416.97680-0.155902.031101.38010K562NSUN2
THUMPD1ENSG00000066654.81322.393401872.41580-0.501704.268401.97520K562PABPC4
THUMPD1ENSG00000066654.8942.333101540.26210-0.708903.522402.36560K562PABPN1
THUMPD1ENSG00000066654.81968.463002460.46430-0.321902.458001.68810K562PPIG
THUMPD1ENSG00000066654.81694.112801352.153800.325202.272501.58950K562PRPF8
THUMPD1ENSG00000066654.81041.938501337.01150-0.359702.649201.76830K562PSIP1
THUMPD1ENSG00000066654.85303.906004062.191000.384706.316004.65010K562PUM1
THUMPD1ENSG00000066654.8717.400701219.71260-0.7657011.568409.51510K562RCC2
THUMPD1ENSG00000066654.81737.643202384.92830-0.456807.891006.57220K562SF3A3
THUMPD1ENSG00000066654.8891.445501156.26910-0.375302.874901.82320K562SRFBP1
THUMPD1ENSG00000066654.8875.609001118.67420-0.353402.606701.59110K562SRSF4
THUMPD1ENSG00000066654.81362.244501803.09530-0.404505.532203.61040K562SSB
THUMPD1ENSG00000066654.81668.582301301.685800.358103.821602.85540K562SYNCRIP
THUMPD1ENSG00000066654.81689.049502088.27380-0.306102.025701.41440K562TARDBP
THUMPD1ENSG00000066654.81486.155502014.31030-0.438702.389001.63570K562TIA1
THUMPD1ENSG00000066654.81018.474201285.99810-0.336502.154701.33870K562TIAL1
THUMPD1ENSG00000066654.81441.297401976.04610-0.455204.093302.72290K562TRA2A
THUMPD1ENSG00000066654.81110.637901366.05360-0.298602.224701.39000K562TRIM56
THUMPD1ENSG00000066654.82136.142901773.193300.268602.559701.78660K562U2AF2
THUMPD1ENSG00000066654.81812.529102192.88330-0.274802.413401.59370K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.





3 RBPs can affect the splicing of THUMPD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETHUMPD1ENSG00000066654.8chr16-207494092074959120749029207492782075021820750393-0.054000.000320.00534excludedHepG2U2AF2
SETHUMPD1ENSG00000066654.8chr16-207494092074959120749029207492782075021820750393-0.057000.001960.07443excludedHepG2SFPQ
A3SSTHUMPD1ENSG00000066654.8chr16-2074841020748656207484102074860820749029207492780.104000.000000.00000longerK562AQR
A3SSTHUMPD1ENSG00000066654.8chr16-2075021820750446207502182075039320752830207531180.193000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for THUMPD1 is not avaliable on ENCORE database.