Experiment Information (Status: Released)

RBP	THUMPD1
gene_aliases
Status	Released
Status_date	2022-07-08
Project	ENCODE4
Note
ID	111

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
THUMPD1-1300	RBNS	20-20	1300	THUMPD1_0nM_1300.fastq.gz
THUMPD1-5	RBNS	20-20	5	THUMPD1_0nM_5.fastq.gz
THUMPD1-80	RBNS	20-20	80	THUMPD1_0nM_80.fastq.gz
THUMPD1-input	CN	20-20	0	THUMPD1_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
THUMPD1_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		THUMPD1_0nM_input.fastq.gz	ENCODE4
THUMPD1_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		THUMPD1_0nM_input.fastq.gz	ENCODE4
THUMPD1_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		THUMPD1_0nM_input.fastq.gz	ENCODE4
THUMPD1_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
THUMPD1_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
THUMPD1_QC_GEL.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
THUMPD1_0nM_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	THUMPD1_0nM_1300.fastq.gz,THUMPD1_0nM_5.fastq.gz,THUMPD1_0nM_80.fastq.gz,THUMPD1_0nM_input.fastq.gz		ENCODE4
THUMPD1_0nM_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4