SLK

General Information

Gene Name : SLK
Gene ID : ENSG00000065613.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SLK)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SLK	ENSG00000065613.13	13.15	11.45	12.30	ENCSR000AEF
HepG2	SLK	ENSG00000065613.13	7.51	13.56	10.54	ENCSR985KAT
K562	SLK	ENSG00000065613.13	15.41	17.76	16.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SLK is not avaliable on ENCORE database.

Proteins bound to RNA

SLK RNA is bound by 24 proteins.

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eCLIP assay for SLK is not avaliable on ENCORE database.

24 proteins are bound to SLK RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	105762840	105762940	+	CDS	4.63703	18.02599	K562	UCHL5
chr10	105762811	105762915	+	CDS	6.09941	14.96864	HepG2	BCLAF1
chr10	105750440	105750543	+	CDS	5.07387	14.51064	HepG2	BCLAF1
chr10	105727057	105727270	+	5'-UTR	3.69685	14.37721	K562	FXR2
chr10	105765277	105765366	+	CDS,intron-Proximal	5.13384	13.53654	K562	SF3B4
chr10	105761939	105762036	+	CDS	5.13572	13.49474	HepG2	BCLAF1
chr10	105762673	105762757	+	CDS	3.75578	13.36249	K562	UCHL5
chr10	105727054	105727141	+	5'-UTR	5.71968	13.24386	HepG2	DDX3X
chr10	105762572	105762660	+	CDS	3.21731	13.23603	K562	UCHL5
chr10	105763026	105763091	+	CDS	5.89813	12.56307	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 81 entries

eCLIP assay for SLK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SLK is not available on ENCORE database.
85 RBPs can affect the levels of SLK.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SLK is not available on ENCORE database.

85 RBPs can affect the gene expression of SLK :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SLK	ENSG00000065613.9	3366.80190	1828.22540	0.88080	37.80010	36.50350	HepG2	SRFBP1
SLK	ENSG00000065613.9	4327.18810	1296.54900	1.73870	23.69830	21.84030	HepG2	RAVER1
SLK	ENSG00000065613.9	2294.40970	1395.74840	0.71700	20.60820	19.56990	HepG2	SRSF1
SLK	ENSG00000065613.9	890.56190	1402.45420	-0.65520	15.84390	14.34630	HepG2	HNRNPL
SLK	ENSG00000065613.9	1855.41940	2754.75260	-0.57020	12.32020	10.95990	K562	EIF2S2
SLK	ENSG00000065613.9	679.73040	1035.40090	-0.60720	11.51350	10.28320	HepG2	DNAJC2
SLK	ENSG00000065613.9	746.44850	1142.44750	-0.61400	11.29460	10.26920	HepG2	TRIM56
SLK	ENSG00000065613.9	1785.39360	1135.53880	0.65280	10.77850	9.81380	HepG2	SRSF9
SLK	ENSG00000065613.9	2368.01940	3671.17710	-0.63260	11.02070	9.48450	K562	GRSF1
SLK	ENSG00000065613.9	1387.52120	801.16130	0.79220	9.55960	8.22400	HepG2	RRP9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SLK is not available on ENCORE database.

18 RBPs can affect the splicing of SLK :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	-0.17900	0.00000	0.00001	excluded	HepG2	U2AF1
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.35500	0.00000	0.00000	included	HepG2	TBRG4
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.43700	0.00000	0.00000	included	HepG2	DDX3X
SE	SLK	ENSG00000065613.9	chr10	+	105765669	105765793	105761201	105761330	105767934	105768114	-0.10900	0.00000	0.00001	excluded	K562	PUS1
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.39100	0.00000	0.00000	included	HepG2	FTO
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.31400	0.00000	0.00014	included	HepG2	HNRNPUL1
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.28000	0.00000	0.00008	included	HepG2	SUPV3L1
SE	SLK	ENSG00000065613.9	chr10	+	105770573	105770666	105767934	105768114	105777917	105778047	0.24600	0.00001	0.00152	included	HepG2	NCBP2
SE	SLK	ENSG00000065613.9	chr10	+	105778541	105778666	105777917	105778047	105779491	105779680	-0.06400	0.00002	0.00127	excluded	K562	AGGF1
SE	SLK	ENSG00000065613.9	chr10	+	105765669	105765793	105761201	105761330	105767934	105768114	-0.07800	0.00003	0.00149	excluded	K562	RBM15

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SLK

General Information

Functions

Localization

Domains (AlphaFold: SLK)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SLK is not avaliable on ENCORE database.

24 proteins are bound to SLK RNA:

eCLIP assay for SLK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SLK is not available on ENCORE database.

85 RBPs can affect the gene expression of SLK :

The Knockdown/knockout RNA-Seq assay for SLK is not available on ENCORE database.

18 RBPs can affect the splicing of SLK :

The Knockdown/knockout RNA-Seq assay for SLK is not avaliable on ENCORE database.