SNX1

General Information

Gene Name : SNX1
Gene ID : ENSG00000028528.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNX1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNX1	ENSG00000028528.14	58.22	66.02	62.12	ENCSR000AEF
HepG2	SNX1	ENSG00000028528.14	67.63	67.83	67.73	ENCSR985KAT
K562	SNX1	ENSG00000028528.14	63.42	55.00	59.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNX1 is not avaliable on ENCORE database.

Proteins bound to RNA

SNX1 RNA is bound by 24 proteins.

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eCLIP assay for SNX1 is not avaliable on ENCORE database.

24 proteins are bound to SNX1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	64426986	64427050	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.71849	23.79945	HepG2	PRPF8
chr15	64430107	64430165	+	3'-UTR,intron-Distal,intron-Proximal	3.84504	21.13627	K562	PUM2
chr15	64404835	64404923	+	3'-UTR,5'-UTR,CDS,intron-Proximal	5.39492	17.51077	HepG2	PRPF8
chr15	64422426	64422522	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49147	13.96126	HepG2	PPIG
chr15	64422425	64422482	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.86675	13.39839	K562	ZNF622
chr15	64388387	64388545	+	intron-Distal,intron-Proximal	4.84767	12.29596	HepG2	EFTUD2
chr15	64428515	64428567	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.12087	12.01275	HepG2	U2AF2
chr15	64426860	64426970	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.41425	11.65231	HepG2	GRWD1
chr15	64429057	64429136	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84162	11.17337	HepG2	PPIG
chr15	64426965	64427008	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54001	11.11753	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 92 entries

eCLIP assay for SNX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNX1 is not available on ENCORE database.
48 RBPs can affect the levels of SNX1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.

48 RBPs can affect the gene expression of SNX1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNX1	ENSG00000028528.10	5180.88790	3589.47520	0.52930	16.75720	15.71780	HepG2	SSB
SNX1	ENSG00000028528.10	3383.15980	2160.20230	0.64710	13.54980	12.58550	HepG2	TIAL1
SNX1	ENSG00000028528.10	1502.83660	2223.20260	-0.56500	13.20820	11.95940	HepG2	HNRNPU
SNX1	ENSG00000028528.10	1679.66280	2608.73430	-0.63520	13.42130	11.50790	K562	HNRNPU
SNX1	ENSG00000028528.10	3066.13260	2339.65190	0.39000	8.32890	7.46320	HepG2	SRSF9
SNX1	ENSG00000028528.10	1075.49760	1618.29580	-0.58950	8.88950	7.44000	K562	U2AF2
SNX1	ENSG00000028528.10	2113.63990	2826.46200	-0.41930	8.17790	6.94460	HepG2	AKAP8L
SNX1	ENSG00000028528.10	2267.30480	2908.09920	-0.35910	7.03440	6.15330	HepG2	UTP3
SNX1	ENSG00000028528.10	3756.73260	2715.07430	0.46840	5.73260	4.80070	HepG2	RPLP0
SNX1	ENSG00000028528.10	2483.70780	3373.17140	-0.44160	5.48690	4.68410	HepG2	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.

17 RBPs can affect the splicing of SNX1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SNX1	ENSG00000028528.10	chr15	+	64422071	64422228			64422114	64422228	64419929	64420005	0.09300	0.00000	0.00000	longer	HepG2	U2AF2
A3SS	SNX1	ENSG00000028528.10	chr15	+	64429044	64429131			64429059	64429131	64428473	64428609	0.09700	0.00000	0.00000	longer	K562	AQR
A5SS	SNX1	ENSG00000028528.10	chr15	+	64422426	64422667			64422426	64422520	64423885	64424091	0.12900	0.00000	0.00000	longer	K562	AQR
MXE	SNX1	ENSG00000028528.10	chr15	+	64423885	64424091	64426862	64427006	64422426	64422520	64428528	64428609	0.26100	0.00000	0.00004	1included	HepG2	U2AF2
SE	SNX1	ENSG00000028528.10	chr15	+	64426862	64427006			64423885	64424091	64428528	64428609	-0.14100	0.00001	0.00019	excluded	K562	PUS1
A3SS	SNX1	ENSG00000028528.10	chr15	+	64422071	64422228			64422114	64422228	64419929	64420005	0.06300	0.00001	0.00007	longer	K562	AQR
SE	SNX1	ENSG00000028528.10	chr15	+	64415701	64415745			64410986	64411053	64418277	64418298	-0.05200	0.00004	0.00075	excluded	K562	AQR
MXE	SNX1	ENSG00000028528.10	chr15	+	64423885	64424091	64426862	64427006	64422426	64422520	64428528	64428609	0.21800	0.00007	0.00654	1included	K562	SAFB
A5SS	SNX1	ENSG00000028528.10	chr15	+	64422426	64422667			64422426	64422520	64423885	64424091	0.08100	0.00013	0.01517	longer	HepG2	SF3A3
SE	SNX1	ENSG00000028528.10	chr15	+	64426862	64427006			64423885	64424091	64428528	64428609	-0.10800	0.00018	0.00720	excluded	K562	AGGF1

Showing 1 to 10 of 30 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNX1

General Information

Functions

Localization

Domains (AlphaFold: SNX1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNX1 is not avaliable on ENCORE database.

24 proteins are bound to SNX1 RNA:

eCLIP assay for SNX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.

48 RBPs can affect the gene expression of SNX1 :

The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.

17 RBPs can affect the splicing of SNX1 :

The Knockdown/knockout RNA-Seq assay for SNX1 is not avaliable on ENCORE database.