SNX1

General Information

Gene Name       : SNX1
Gene ID             : ENSG00000028528.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX1ENSG00000028528.1458.2266.0262.12ENCSR000AEF
HepG2SNX1ENSG00000028528.1467.6367.8367.73ENCSR985KAT
K562SNX1ENSG00000028528.1463.4255.0059.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX1 RNA is bound by 24 proteins.  







eCLIP assay for SNX1 is not avaliable on ENCORE database.





24 proteins are bound to SNX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156442242664422522+3'-UTR,CDS,intron-Distal,intron-Proximal3.4914713.96126HepG2PPIG
chr156442219464422229+3'-UTR,CDS,intron-Distal,intron-Proximal3.195876.58818HepG2PPIG
chr156442248164422533+3'-UTR,CDS,intron-Distal,intron-Proximal3.580347.58656HepG2BCLAF1
chr156442216464422223+3'-UTR,CDS,intron-Distal4.288665.94293HepG2BCLAF1
chr156441044264410501+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.992114.65563K562AQR
chr156442693064427047+3'-UTR,CDS,intron-Distal,intron-Proximal3.525913.26275K562BUD13
chr156442242364422529+3'-UTR,CDS,intron-Distal,intron-Proximal3.930869.63482HepG2GRWD1
chr156442905464429195+3'-UTR,CDS,intron-Distal,intron-Proximal3.488555.62184K562GRWD1
chr156441573064415791+3'-UTR,CDS,intron-Distal,intron-Proximal5.590319.23760K562AQR
chr156441571964415785+3'-UTR,CDS,intron-Distal,intron-Proximal4.152283.25089HepG2AQR
chr156442211364422153+3'-UTR,CDS,intron-Distal,intron-Proximal4.491315.13243HepG2GRWD1
chr156443030964430395+3'-UTR,CDS,intron-Distal,intron-Proximal4.783917.37733HepG2TIAL1
chr156441102664411113+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.342335.28960K562AQR
chr156440488264404896+3'-UTR,5'-UTR,CDS,intron-Proximal3.114673.49168K562AQR
chr156442211364422205+3'-UTR,CDS,intron-Distal,intron-Proximal3.783248.33890K562UCHL5
chr156442383664423914+3'-UTR,CDS,intron-Distal,intron-Proximal5.123636.44303K562AQR
chr156442851864428552+3'-UTR,CDS,intron-Distal,intron-Proximal3.351885.37652K562BUD13
chr156442700564427066+3'-UTR,CDS,intron-Distal,intron-Proximal3.943159.10472K562AQR
chr156442852664428612+3'-UTR,CDS,intron-Distal,intron-Proximal4.897577.16913K562LIN28B
chr156442404064424092+3'-UTR,CDS,intron-Distal,intron-Proximal3.229196.23940HepG2PPIG
chr156442686064426970+3'-UTR,CDS,intron-Distal,intron-Proximal4.4142511.65231HepG2GRWD1
chr156442859764428657+3'-UTR,CDS,intron-Distal,intron-Proximal4.681374.48002K562AQR
chr156442906064429073+3'-UTR,CDS,intron-Distal3.991343.06595HepG2BCLAF1
chr156442244764422481+3'-UTR,CDS,intron-Distal3.576307.89260HepG2BCLAF1
chr156442396164424001+3'-UTR,CDS,intron-Distal3.853715.24452HepG2PPIG
chr156442858464428651+3'-UTR,CDS,intron-Distal,intron-Proximal4.625616.81564HepG2PRPF8
chr156441037164410443+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8325310.36594HepG2BCLAF1
chr156441031664410371+3'-UTR,CDS,intron-Distal,intron-Proximal3.215075.91405HepG2BCLAF1
chr156442905764429136+3'-UTR,CDS,intron-Distal,intron-Proximal3.8416211.17337HepG2PPIG
chr156443127864431385+3'-UTR,intron-Distal3.195793.80706K562KHSRP
chr156442851564428567+3'-UTR,CDS,intron-Distal,intron-Proximal4.1208712.01275HepG2U2AF2
chr156442692064426987+3'-UTR,CDS,intron-Distal4.239255.05122K562DDX24
chr156442999464430072+3'-UTR,intron-Distal3.336113.20659K562SND1
chr156441826164418310+3'-UTR,CDS,intron-Distal,intron-Proximal3.013153.80334HepG2U2AF2
chr156441031564410343+3'-UTR,CDS,intron-Distal,intron-Proximal4.100484.12139K562DDX24
chr156441035364410446+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.077217.36535K562ZNF622
chr156443532864435384+3'-UTR,intron-Distal3.136053.08145HepG2HLTF
chr156441832764418418+3'-UTR,CDS,intron-Distal3.054934.05271HepG2PPIG
chr156442686064426920+3'-UTR,CDS,intron-Distal,intron-Proximal3.481038.77723HepG2PPIG
chr156442406364424130+3'-UTR,CDS,intron-Distal,intron-Proximal4.257904.75655HepG2PRPF8
chr156441568464415730+3'-UTR,CDS,intron-Distal,intron-Proximal3.068113.49168K562AQR
chr156441996364420006+3'-UTR,CDS,intron-Distal,intron-Proximal3.055264.30683K562BUD13
chr156440483564404923+3'-UTR,5'-UTR,CDS,intron-Proximal5.3949217.51077HepG2PRPF8
chr156441992964420006+3'-UTR,CDS,intron-Distal,intron-Proximal3.299017.30210K562ZNF622
chr156441566964415789+3'-UTR,CDS,intron-Distal,intron-Proximal3.8470710.95071HepG2PRPF8
chr156442249964422573+3'-UTR,CDS,intron-Distal,intron-Proximal3.959985.61068HepG2PRPF8
chr156442686264426934+3'-UTR,CDS,intron-Distal,intron-Proximal3.091703.24162HepG2G3BP1
chr156443022764430278+3'-UTR,CDS,intron-Distal,intron-Proximal3.828394.77518HepG2U2AF2
chr156442682164426917+3'-UTR,CDS,intron-Distal,intron-Proximal3.159736.97285HepG2BUD13
chr156443625564436392+3'-UTR,intron-Distal3.588784.98593K562KHSRP
chr156442852864428546+3'-UTR,CDS,intron-Distal,intron-Proximal3.881208.58713HepG2PPIG
chr156442852764428608+3'-UTR,CDS,intron-Distal,intron-Proximal4.051116.81811K562UCHL5
chr156442855364428609+3'-UTR,CDS,intron-Distal3.969978.98325HepG2PPIG
chr156441569564415780+3'-UTR,CDS,intron-Distal,intron-Proximal3.337805.76243HepG2BUD13
chr156442388364423952+3'-UTR,CDS,intron-Distal,intron-Proximal3.584688.12996HepG2PPIG
chr156442696564427008+3'-UTR,CDS,intron-Distal,intron-Proximal3.5400111.11753HepG2PPIG
chr156442242564422482+3'-UTR,CDS,intron-Distal,intron-Proximal5.8667513.39839K562ZNF622
chr156442215364422215+3'-UTR,CDS,intron-Distal3.411285.77413K562DDX24
chr156441832164418411+3'-UTR,CDS,intron-Distal3.849623.15006K562RBM15
chr156442251764422612+3'-UTR,CDS,intron-Distal,intron-Proximal3.284593.93669K562AQR
chr156442403864424093+3'-UTR,CDS,intron-Distal,intron-Proximal3.461565.10069HepG2GRWD1
chr156441837564418422+3'-UTR,CDS,intron-Distal,intron-Proximal3.277725.79905HepG2BCLAF1
chr156442852464428598+3'-UTR,CDS,intron-Distal,intron-Proximal3.038963.44907HepG2LIN28B
chr156442208364422179+3'-UTR,CDS,intron-Distal,intron-Proximal3.798157.38843HepG2BUD13
chr156442221564422228+3'-UTR,CDS,intron-Distal3.302113.31745K562ZNF622
chr156441829064418407+3'-UTR,CDS,intron-Distal3.174134.91547HepG2GRWD1
chr156442851564428567+3'-UTR,CDS,intron-Distal,intron-Proximal3.956663.19080K562U2AF2
chr156441941764419452+3'-UTR,CDS,intron-Distal,intron-Proximal4.673814.55944K562ZNF622
chr156443021464430285+3'-UTR,CDS,intron-Distal,intron-Proximal3.287737.38324HepG2CSTF2
chr156442997464430069+3'-UTR,intron-Distal4.7505411.00029K562IGF2BP1
chr156440477664404866+3'-UTR,5'-UTR,CDS3.304598.51590HepG2GRWD1
chr156441826164418340+3'-UTR,CDS,intron-Distal,intron-Proximal3.344633.99381K562BUD13
chr156443010764430165+3'-UTR,intron-Distal,intron-Proximal3.8450421.13627K562PUM2
chr156442698664427050+3'-UTR,CDS,intron-Distal,intron-Proximal4.7184923.79945HepG2PRPF8
chr156441939064419453+3'-UTR,CDS,intron-Distal,intron-Proximal3.422244.22242HepG2G3BP1
chr156442989864429974+3'-UTR,intron-Distal4.702325.86125HepG2HNRNPK
chr156443643264436558+3'-UTR,intron-Distal3.863623.47315HepG2CSTF2
chr156442248264422521+3'-UTR,CDS,intron-Distal,intron-Proximal3.094595.44868K562ZNF622
chr156442387064423976+3'-UTR,CDS,intron-Distal,intron-Proximal3.370769.24221K562DDX24
chr156442906964429138+3'-UTR,CDS,intron-Distal,intron-Proximal3.551857.44807HepG2GRWD1
chr156438834664388421+CDS,intron-Distal,intron-Proximal3.727168.70001HepG2PRPF8
chr156438840564388510+intron-Distal,intron-Proximal3.401035.32169K562EFTUD2
chr156442965364429735+intron-Distal,intron-Proximal5.632388.51022HepG2XPO5
chr156441595864416029+intron-Distal3.543855.31346HepG2QKI
chr156442866464428721+intron-Distal,intron-Proximal4.428164.85612K562PRPF8
chr156439569464395907+intron-Distal3.077427.09377K562KHSRP
chr156442636264426411+intron-Distal3.149293.07751K562KHSRP
chr156442410964424198+intron-Distal,intron-Proximal3.911087.22920K562AQR
chr156438838764388545+intron-Distal,intron-Proximal4.8476712.29596HepG2EFTUD2
chr156442412164424190+intron-Distal,intron-Proximal3.113004.81603K562BUD13
chr156442414164424183+intron-Distal,intron-Proximal4.114143.49003K562PRPF8
chr156440489664404930+intron-Proximal3.708593.52230K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX1 is not available on ENCORE database.

  • 48 RBPs can affect the levels of SNX1.  








The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.





48 RBPs can affect the gene expression of SNX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX1ENSG00000028528.102113.639902826.46200-0.419308.177906.94460HepG2AKAP8L
SNX1ENSG00000028528.103821.931002689.139000.507105.357404.28180HepG2ASCC1
SNX1ENSG00000028528.102502.738001984.266300.334803.019002.39690HepG2BOP1
SNX1ENSG00000028528.103022.177902521.957900.260902.352201.33370HepG2CPSF7
SNX1ENSG00000028528.101714.976701992.91360-0.216702.085601.46610HepG2DNAJC21
SNX1ENSG00000028528.101727.697702323.06880-0.427205.170603.60110HepG2EIF2S2
SNX1ENSG00000028528.103510.213002841.153700.305001.965701.42300HepG2EIF4A3
SNX1ENSG00000028528.101954.867702766.32940-0.500903.441702.67750HepG2EIF4B
SNX1ENSG00000028528.102788.065001824.777800.611402.393401.45590HepG2FTO
SNX1ENSG00000028528.101723.374202133.52690-0.308002.843101.87940HepG2HNRNPM
SNX1ENSG00000028528.101502.836602223.20260-0.5650013.2082011.95940HepG2HNRNPU
SNX1ENSG00000028528.103308.138402703.038800.291302.100101.50290HepG2IGF2BP2
SNX1ENSG00000028528.103544.942202883.746200.297701.898701.37090HepG2MATR3
SNX1ENSG00000028528.103065.164302600.730600.236903.230302.58380HepG2PCBP1
SNX1ENSG00000028528.101007.755301414.59260-0.489206.234004.43050HepG2PKM
SNX1ENSG00000028528.102483.707803373.17140-0.441605.486904.68410HepG2PUF60
SNX1ENSG00000028528.103926.577303580.830400.132901.850101.34430HepG2PUM1
SNX1ENSG00000028528.102930.632003578.17750-0.288003.153802.43740HepG2PUM2
SNX1ENSG00000028528.103409.925202865.444000.250904.039103.32020HepG2PUS1
SNX1ENSG00000028528.103756.732602715.074300.468405.732604.80070HepG2RPLP0
SNX1ENSG00000028528.102407.727501865.722500.367802.090101.39410HepG2RPS3A
SNX1ENSG00000028528.104814.785304134.225100.219803.714103.15970HepG2SRFBP1
SNX1ENSG00000028528.103810.900603330.587300.194302.549401.94390HepG2SRSF5
SNX1ENSG00000028528.102954.399102476.215500.254603.510602.74020HepG2SRSF7
SNX1ENSG00000028528.103066.132602339.651900.390008.328907.46320HepG2SRSF9
SNX1ENSG00000028528.105180.887903589.475200.5293016.7572015.71780HepG2SSB
SNX1ENSG00000028528.101874.117901427.285500.392802.883301.86810HepG2TFIP11
SNX1ENSG00000028528.103383.159802160.202300.6471013.5498012.58550HepG2TIAL1
SNX1ENSG00000028528.102538.332402179.571400.219702.691302.13330HepG2TRIM56
SNX1ENSG00000028528.103901.536703295.543600.243402.353201.55380HepG2TUFM
SNX1ENSG00000028528.101901.826402645.20080-0.476004.830304.01330HepG2U2AF1
SNX1ENSG00000028528.102267.304802908.09920-0.359107.034406.15330HepG2UTP3
SNX1ENSG00000028528.101767.594502509.68310-0.505703.292701.90160HepG2XRCC5
SNX1ENSG00000028528.102466.138902160.182000.191002.479101.83800HepG2ZC3H8
SNX1ENSG00000028528.102431.839402748.54220-0.176601.909101.42080K562AGGF1
SNX1ENSG00000028528.102142.026302859.96600-0.417004.597203.74770K562AKAP8L
SNX1ENSG00000028528.102447.615803000.76110-0.294003.699202.63040K562ATP5C1
SNX1ENSG00000028528.103804.377403207.827800.246003.343102.63710K562DDX47
SNX1ENSG00000028528.102346.047002859.43830-0.285503.751902.93680K562EIF2S2
SNX1ENSG00000028528.101495.334101091.381800.454202.219801.33080K562EIF3A
SNX1ENSG00000028528.102151.857301775.853100.277002.435501.68680K562EIF3G
SNX1ENSG00000028528.104931.046504325.758200.188802.496901.60120K562EIF4G2
SNX1ENSG00000028528.102428.373801990.469300.286802.196601.43180K562FMR1
SNX1ENSG00000028528.102280.352601768.359300.366705.358904.55470K562FXR1
SNX1ENSG00000028528.103063.226603810.39080-0.314903.361202.53020K562GRSF1
SNX1ENSG00000028528.101679.662802608.73430-0.6352013.4213011.50790K562HNRNPU
SNX1ENSG00000028528.102851.190203506.93230-0.298602.462101.70780K562HSPD1
SNX1ENSG00000028528.103875.895104719.80430-0.284202.118801.40500K562PUF60
SNX1ENSG00000028528.105876.930505019.716800.227402.713001.65760K562PUM1
SNX1ENSG00000028528.102345.018402763.56600-0.236902.440401.87720K562RBM15
SNX1ENSG00000028528.102616.833302064.236100.342103.724402.90900K562SRSF1
SNX1ENSG00000028528.101075.497601618.29580-0.589508.889507.44000K562U2AF2
SNX1ENSG00000028528.103280.868502862.848600.196502.440701.76480K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX1 is not available on ENCORE database.





17 RBPs can affect the splicing of SNX1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX1ENSG00000028528.10chr15+644157016441574564410986644110536441827764418298-0.052000.000040.00075excludedK562AQR
SESNX1ENSG00000028528.10chr15+6442686264427006644238856442409164428528644286090.071000.000780.03214includedK562FXR1
SESNX1ENSG00000028528.10chr15+644268626442700664423885644240916442852864428609-0.141000.000010.00019excludedK562PUS1
SESNX1ENSG00000028528.10chr15+644268626442700664423885644240916442852864428609-0.107000.000320.05339excludedK562LARP4
SESNX1ENSG00000028528.10chr15+644268626442700664423885644240916442852864428609-0.092000.000500.02024excludedK562UTP18
SESNX1ENSG00000028528.10chr15+644103156441044364404771644048836441827764418419-0.067000.006030.08360excludedK562U2AF2
SESNX1ENSG00000028528.10chr15+644268626442700664423885644240916442852864428609-0.109000.000270.00959excludedK562RBM15
SESNX1ENSG00000028528.10chr15+644268626442700664423885644240916442852864428609-0.108000.000180.00720excludedK562AGGF1
A3SSSNX1ENSG00000028528.10chr15+6442889464429131644290596442913164428528644286090.058000.003220.09260longerK562U2AF2
A3SSSNX1ENSG00000028528.10chr15+6442207164422228644221146442222864419929644200050.093000.000000.00000longerHepG2U2AF2
A3SSSNX1ENSG00000028528.10chr15+6442207164422228644221146442222864419929644200050.063000.000010.00007longerK562AQR
A3SSSNX1ENSG00000028528.10chr15+6442904464429131644290596442913164428473644286090.097000.000000.00000longerK562AQR
A3SSSNX1ENSG00000028528.10chr15+6442889464429131644290596442913164428528644286090.078000.000280.01636longerK562U2AF1
A5SSSNX1ENSG00000028528.10chr15+6442242664422667644224266442252064423885644240910.129000.000000.00000longerK562AQR
A5SSSNX1ENSG00000028528.10chr15+6442242664422667644224266442252064423885644240910.081000.000130.01517longerHepG2SF3A3
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644109866441105364419372644194510.168000.000530.012061includedK562DROSHA
MXESNX1ENSG00000028528.10chr15+64423885644240916442686264427006644224266442252064428528644286090.140000.005530.058551includedK562DROSHA
MXESNX1ENSG00000028528.10chr15+64410904644110536441570164415745644103156441044364418277644182980.112000.000480.004771includedK562AQR
MXESNX1ENSG00000028528.10chr15+64410939644110536441570164415745644103156441044364418277644184190.110000.000260.002791includedK562AQR
MXESNX1ENSG00000028528.10chr15+6441570164415745644182776441841964410986644110536441937264419451-0.125000.002620.020862includedK562AQR
MXESNX1ENSG00000028528.10chr15+6441098664411053644157016441574564410315644104436441827764418419-0.110000.000450.036642includedHepG2NOLC1
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644047716440488364419372644194510.064000.004390.099611includedHepG2SF3A3
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644109866441105364419372644194510.102000.001900.051311includedHepG2XRN2
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644109866441105364419372644194510.189000.000370.003531includedHepG2U2AF2
MXESNX1ENSG00000028528.10chr15+64423885644240916442686264427006644224266442252064428528644286090.261000.000000.000041includedHepG2U2AF2
MXESNX1ENSG00000028528.10chr15+64423885644240916442686264427006644224266442252064428528644286090.218000.000070.006541includedK562SAFB
MXESNX1ENSG00000028528.10chr15+64410990644110536441570164415745644103156441044364418277644184190.085000.004950.087901includedHepG2HNRNPK
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644109866441105364419372644194510.106000.000940.051541includedHepG2LARP4
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644047716440488364419372644194510.074000.003990.064281includedK562PRPF8
MXESNX1ENSG00000028528.10chr15+64415701644157456441827764418419644109866441105364419372644194510.137000.006790.075571includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX1 is not avaliable on ENCORE database.