SCN4A

General Information

Gene Name       : SCN4A
Gene ID             : ENSG00000007314.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCN4A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCN4AENSG00000007314.120.070.040.06ENCSR000AEF
HepG2SCN4AENSG00000007314.120.010.010.01ENCSR985KAT
K562SCN4AENSG00000007314.123.351.282.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCN4A is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SCN4A RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SCN4A is not avaliable on ENCORE database.






NO known proteins are bound to SCN4A RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SCN4A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCN4A is not available on ENCORE database.

  • 38 RBPs can affect the levels of SCN4A.  








The Knockdown/knockout RNA-Seq assay for SCN4A is not available on ENCORE database.





38 RBPs can affect the gene expression of SCN4A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCN4AENSG00000007314.726.845204.350502.625303.562201.67590HepG2APOBEC3C
SCN4AENSG00000007314.730.741308.528601.849702.044701.37720HepG2FIP1L1
SCN4AENSG00000007314.734.626703.406703.345306.074905.10570HepG2G3BP1
SCN4AENSG00000007314.70.0000015.46290-99999.999994.122603.37000HepG2HNRNPLL
SCN4AENSG00000007314.734.393407.671602.164403.632402.19360HepG2KRR1
SCN4AENSG00000007314.720.744603.697402.488102.412201.82090HepG2MATR3
SCN4AENSG00000007314.7127.0742017.634002.849106.315205.31580HepG2PUM2
SCN4AENSG00000007314.721.442905.474601.969602.018701.54090HepG2NELFE
SCN4AENSG00000007314.720.334804.685002.117702.232201.51360HepG2RPS3A
SCN4AENSG00000007314.71.6895015.30450-3.179302.525001.84900HepG2SF3B1
SCN4AENSG00000007314.75.6907019.15970-1.751401.901901.46320HepG2SRFBP1
SCN4AENSG00000007314.726.233806.147202.093301.963901.37930HepG2SUPV3L1
SCN4AENSG00000007314.721.958405.728601.938402.307801.33710HepG2UTP18
SCN4AENSG00000007314.737.371109.329402.002003.762803.00020HepG2ZC3H8
SCN4AENSG00000007314.748.19360200.39340-2.0559013.3089012.16490K562AGGF1
SCN4AENSG00000007314.733.64580208.50930-2.6316015.4148013.65620K562AKAP8L
SCN4AENSG00000007314.765.58910218.75930-1.7378011.487909.44670K562ATP5C1
SCN4AENSG00000007314.748.2431016.207201.573603.203501.63590K562CKAP4
SCN4AENSG00000007314.7114.17470235.11560-1.042104.158402.33790K562DDX19B
SCN4AENSG00000007314.791.32430224.42790-1.297206.012504.64630K562DKC1
SCN4AENSG00000007314.744.1971017.636701.325302.689001.50310K562EIF2S1
SCN4AENSG00000007314.736.538207.439002.296103.951803.00780K562GPKOW
SCN4AENSG00000007314.747.1603017.538901.426902.808401.72940K562HNRNPA1
SCN4AENSG00000007314.719.0895088.79780-2.217706.499804.36510K562HNRNPA2B1
SCN4AENSG00000007314.743.5036014.915501.544202.772202.17470K562HNRNPC
SCN4AENSG00000007314.796.9008020.332502.252609.153107.72270K562HSPD1
SCN4AENSG00000007314.745.81440221.31230-2.2722014.6337012.20280K562KIF1C
SCN4AENSG00000007314.739.492106.353402.635904.579903.34390K562KRR1
SCN4AENSG00000007314.789.53850211.82450-1.242305.459503.77340K562MAK16
SCN4AENSG00000007314.780.12380247.92130-1.629609.003407.17360K562MBNL1
SCN4AENSG00000007314.731.34260173.77200-2.4710010.153008.06380K562NAA15
SCN4AENSG00000007314.748.6581015.880001.615403.075201.76710K562PABPC1
SCN4AENSG00000007314.720.9250077.70590-1.892804.473803.13290K562PABPN1
SCN4AENSG00000007314.717.42270206.84900-3.5695023.6085022.03740K562PUS1
SCN4AENSG00000007314.713.10750201.48930-3.9422025.4845023.60820K562RBM15
SCN4AENSG00000007314.717.1918071.08300-2.047804.408502.78490K562SF1
SCN4AENSG00000007314.735.7089081.60500-1.192402.535301.38080K562SNRNP200
SCN4AENSG00000007314.739.3189015.367901.355202.263601.33190K562SRSF5
SCN4AENSG00000007314.758.6659015.870101.886105.213804.04060K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCN4A is not available on ENCORE database.






No RBPs affect the alternative splcing events of SCN4A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SCN4A is not avaliable on ENCORE database.