GNPDA2

General Information

Gene Name       : GNPDA2
Gene ID             : ENSG00000163281.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GNPDA2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GNPDA2ENSG00000163281.1117.2315.7516.49ENCSR000AEF
HepG2GNPDA2ENSG00000163281.113.927.905.91ENCSR985KAT
K562GNPDA2ENSG00000163281.118.387.898.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GNPDA2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GNPDA2 RNA is bound by 1 proteins.  







eCLIP assay for GNPDA2 is not avaliable on ENCORE database.





1 proteins are bound to GNPDA2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr44470970744709783-3'-UTR,CDS,intron-Distal,intron-Proximal3.384433.76553K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GNPDA2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GNPDA2 is not available on ENCORE database.

  • 43 RBPs can affect the levels of GNPDA2.  








The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.





43 RBPs can affect the gene expression of GNPDA2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GNPDA2ENSG00000163281.7164.71370236.51700-0.522002.679402.00310HepG2AUH
GNPDA2ENSG00000163281.7215.30880149.665800.524602.614201.96360HepG2CKAP4
GNPDA2ENSG00000163281.7258.92840124.412201.057305.206104.15230HepG2CNOT7
GNPDA2ENSG00000163281.7101.23340164.76640-0.702703.084802.34620HepG2DNAJC21
GNPDA2ENSG00000163281.7230.00190146.282300.652803.335102.41910HepG2EWSR1
GNPDA2ENSG00000163281.7355.92260186.354000.933405.011304.00390HepG2FIP1L1
GNPDA2ENSG00000163281.7124.21660258.04980-1.054806.015205.09730HepG2GPKOW
GNPDA2ENSG00000163281.7161.28710246.25990-0.610602.578901.96750HepG2HNRNPLL
GNPDA2ENSG00000163281.7136.20280208.87540-0.616902.215101.64740HepG2MATR3
GNPDA2ENSG00000163281.7460.36390177.067701.378409.420708.17370HepG2RAVER1
GNPDA2ENSG00000163281.7338.22000226.986600.575303.479302.91660HepG2RBM22
GNPDA2ENSG00000163281.7306.82730188.440100.703202.526601.87910HepG2RBM25
GNPDA2ENSG00000163281.7156.58820218.25120-0.479001.951801.36600HepG2RPLP0
GNPDA2ENSG00000163281.7224.51040129.018700.799103.720802.82650HepG2RRP9
GNPDA2ENSG00000163281.7323.73870185.107100.806404.182603.34400HepG2SF3A3
GNPDA2ENSG00000163281.7347.57150243.760300.511702.628701.94080HepG2SF3B1
GNPDA2ENSG00000163281.7411.17250256.362200.681505.909105.25330HepG2SRFBP1
GNPDA2ENSG00000163281.7319.17200208.340700.615303.981403.43990HepG2SRSF1
GNPDA2ENSG00000163281.7452.89230262.253800.788104.845103.48760HepG2SRSF3
GNPDA2ENSG00000163281.7145.04840199.03570-0.456501.980701.38080HepG2SRSF7
GNPDA2ENSG00000163281.7115.56030169.50040-0.552602.287401.77560HepG2SRSF9
GNPDA2ENSG00000163281.7114.62500178.60480-0.639802.742802.24400HepG2TIAL1
GNPDA2ENSG00000163281.7129.67360180.19540-0.474701.890901.40710HepG2TRIM56
GNPDA2ENSG00000163281.7121.75070221.24910-0.861702.757301.88650HepG2TUFM
GNPDA2ENSG00000163281.7349.25910159.399201.131608.156707.07940HepG2U2AF1
GNPDA2ENSG00000163281.7254.14890158.492000.681204.026303.32330HepG2UTP3
GNPDA2ENSG00000163281.7127.52200180.54660-0.501602.173901.67220HepG2ZNF622
GNPDA2ENSG00000163281.7812.69560528.788100.619908.415707.49960K562AGGF1
GNPDA2ENSG00000163281.7930.14930550.232500.757309.409508.12230K562AKAP8L
GNPDA2ENSG00000163281.7380.27490500.04010-0.395002.440901.70050K562CPSF6
GNPDA2ENSG00000163281.7243.28250354.74760-0.544203.208802.32850K562EIF4A3
GNPDA2ENSG00000163281.7666.86520437.549900.607802.383801.73430K562G3BP2
GNPDA2ENSG00000163281.7951.37960496.433100.938304.727402.99540K562HNRNPA2B1
GNPDA2ENSG00000163281.7542.04220729.33330-0.428202.935802.11680K562HSPD1
GNPDA2ENSG00000163281.7888.54360583.918300.605604.335303.27140K562KIF1C
GNPDA2ENSG00000163281.7348.69140483.91570-0.472802.867701.92730K562MATR3
GNPDA2ENSG00000163281.7753.08970458.504900.715803.576102.54220K562NAA15
GNPDA2ENSG00000163281.7437.70090610.66310-0.480403.383702.46100K562PPIG
GNPDA2ENSG00000163281.71223.87340545.647201.1653019.1370017.73960K562PUS1
GNPDA2ENSG00000163281.7881.59730531.677900.7295010.458109.33010K562RBM15
GNPDA2ENSG00000163281.7292.69310466.58140-0.672704.269002.99450K562RPS3
GNPDA2ENSG00000163281.7593.39290476.386300.316802.056701.34660K562SF3A3
GNPDA2ENSG00000163281.7785.24090455.937700.784202.965701.67890K562SNRNP200
GNPDA2ENSG00000163281.7323.35710450.47030-0.478302.849001.77670K562SRSF4
GNPDA2ENSG00000163281.7750.56980424.166000.823307.731105.74630K562U2AF1
GNPDA2ENSG00000163281.7655.33550438.058800.581005.737304.58110K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.





6 RBPs can affect the splicing of GNPDA2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGNPDA2ENSG00000163281.7chr4-447241004472425944712969447131544472849044728587-0.348000.001110.02936excludedHepG2HNRNPK
SEGNPDA2ENSG00000163281.7chr4-447241004472425944712969447131544472849044728587-0.285000.001890.09213excludedHepG2AKAP1
SEGNPDA2ENSG00000163281.7chr4-4471661244716676447129694471315444719129447193120.281000.000510.05921includedHepG2SSB
SEGNPDA2ENSG00000163281.7chr4-4471912944719312447129694471315444724100447242590.284000.003650.09957includedK562HNRNPU
SEGNPDA2ENSG00000163281.7chr4-447241004472425944720325447204274472849044728587-0.384000.000170.04317excludedK562SAFB
MXEGNPDA2ENSG00000163281.7chr4-44719129447193124472410044724283447129694471315444728490447285400.163000.002020.016761includedK562AQR
MXEGNPDA2ENSG00000163281.7chr4-44720325447204274472410044724283447191294471931244728490447285400.150000.001770.014991includedK562AQR
MXEGNPDA2ENSG00000163281.7chr4-4471912944719312447241004472425944712969447131544472849044728587-0.247000.002300.050112includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GNPDA2 is not avaliable on ENCORE database.