GREB1

General Information

Gene Name : GREB1
Gene ID : ENSG00000196208.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GREB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GREB1	ENSG00000196208.13	2.18	0.25	1.22	ENCSR000AEF
HepG2	GREB1	ENSG00000196208.13	49.67	40.76	45.22	ENCSR985KAT
K562	GREB1	ENSG00000196208.13	0.05	0.06	0.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GREB1 is not avaliable on ENCORE database.

Proteins bound to RNA

GREB1 RNA is bound by 55 proteins.

CanvasJS.com

eCLIP assay for GREB1 is not avaliable on ENCORE database.

55 proteins are bound to GREB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	11735495	11735543	+	CDS,intron-Proximal	4.94701	400.00000	HepG2	PRPF8
chr2	11720920	11721007	+	CDS,intron-Proximal	4.54601	400.00000	HepG2	PRPF8
chr2	11733258	11733296	+	intron-Proximal	4.55677	78.89069	HepG2	PRPF8
chr2	11733250	11733258	+	CDS,intron-Proximal	4.49005	73.15732	HepG2	PRPF8
chr2	11736220	11736256	+	CDS,intron-Proximal	4.44099	64.91396	HepG2	U2AF2
chr2	11720996	11721116	+	CDS,intron-Distal,intron-Proximal	3.76754	64.71613	HepG2	EFTUD2
chr2	11726020	11726072	+	CDS,intron-Proximal	4.59426	50.06570	HepG2	PRPF8
chr2	11735587	11735636	+	intron-Distal,intron-Proximal	5.55549	49.84992	HepG2	XPO5
chr2	11735284	11735395	+	CDS,intron-Proximal	5.64432	43.79185	HepG2	AQR
chr2	11735542	11735587	+	intron-Proximal	5.22913	43.49054	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 360 entries

eCLIP assay for GREB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GREB1 is not available on ENCORE database.
130 RBPs can affect the levels of GREB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GREB1 is not available on ENCORE database.

130 RBPs can affect the gene expression of GREB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GREB1	ENSG00000196208.9	2673.57880	7835.98940	-1.55130	182.99250	180.57530	HepG2	ZNF622
GREB1	ENSG00000196208.9	3439.41450	7629.63490	-1.14950	81.36620	79.62040	HepG2	SRFBP1
GREB1	ENSG00000196208.9	2595.84080	5160.74650	-0.99140	57.14020	55.26350	HepG2	ACO1
GREB1	ENSG00000196208.9	1693.24280	6749.93630	-1.99510	56.88150	54.96670	HepG2	AKAP1
GREB1	ENSG00000196208.9	2422.82560	6755.21720	-1.47930	54.92740	53.19600	HepG2	RBM22
GREB1	ENSG00000196208.9	3387.46970	6086.99110	-0.84550	42.96680	41.59300	HepG2	SRSF1
GREB1	ENSG00000196208.9	8153.00730	4945.77770	0.72100	42.61210	40.56140	HepG2	SLBP
GREB1	ENSG00000196208.9	2115.05560	4761.57160	-1.17070	37.57330	35.17910	HepG2	MSI2
GREB1	ENSG00000196208.9	2138.70940	3568.88750	-0.73870	35.49740	33.64270	HepG2	SMN1
GREB1	ENSG00000196208.9	2112.88470	5884.02310	-1.47760	35.14380	33.01220	HepG2	FIP1L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 131 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GREB1 is not available on ENCORE database.

10 RBPs can affect the splicing of GREB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GREB1	ENSG00000196208.9	chr2	+	11726165	11726262	11725887	11726031	11728871	11729057	0.07300	0.00000	0.00013	included	HepG2	HNRNPK
SE	GREB1	ENSG00000196208.9	chr2	+	11737519	11737767	11736236	11736365	11737906	11738104	0.07300	0.00000	0.00030	included	HepG2	HNRNPK
SE	GREB1	ENSG00000196208.9	chr2	+	11778796	11778935	11777841	11778042	11780416	11782912	0.12900	0.00000	0.00071	included	HepG2	TAF15
A3SS	GREB1	ENSG00000196208.9	chr2	+	11770073	11770235	11770122	11770235	11767087	11767230	-0.17500	0.00000	0.00045	shorter	HepG2	SRSF1
A3SS	GREB1	ENSG00000196208.9	chr2	+	11770073	11770235	11770122	11770235	11767087	11767230	-0.17300	0.00000	0.00148	shorter	HepG2	HNRNPC
SE	GREB1	ENSG00000196208.9	chr2	+	11765812	11765965	11765279	11765438	11767087	11767230	0.05600	0.00001	0.00117	included	HepG2	HNRNPL
SE	GREB1	ENSG00000196208.9	chr2	+	11778796	11778935	11777841	11778042	11780416	11782912	-0.29100	0.00002	0.00057	excluded	HepG2	U2AF1
SE	GREB1	ENSG00000196208.9	chr2	+	11743479	11743525	11742531	11742668	11750813	11751153	0.17100	0.00005	0.00917	included	HepG2	TAF15
SE	GREB1	ENSG00000196208.9	chr2	+	11765812	11765965	11765279	11765438	11767087	11767230	0.05200	0.00006	0.00253	included	HepG2	SRSF1
A3SS	GREB1	ENSG00000196208.9	chr2	+	11736236	11736365	11736274	11736365	11735376	11735505	-0.14200	0.00007	0.00928	shorter	HepG2	SRSF1

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GREB1

General Information

Functions

Localization

Domains (AlphaFold: GREB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GREB1 is not avaliable on ENCORE database.

55 proteins are bound to GREB1 RNA:

eCLIP assay for GREB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GREB1 is not available on ENCORE database.

130 RBPs can affect the gene expression of GREB1 :

The Knockdown/knockout RNA-Seq assay for GREB1 is not available on ENCORE database.

10 RBPs can affect the splicing of GREB1 :

The Knockdown/knockout RNA-Seq assay for GREB1 is not avaliable on ENCORE database.