NDUFA3

General Information

Gene Name       : NDUFA3
Gene ID             : ENSG00000170906.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFA3ENSG00000170906.1521.3869.5645.47ENCSR000AEF
HepG2NDUFA3ENSG00000170906.15106.1032.7869.44ENCSR985KAT
K562NDUFA3ENSG00000170906.15126.71111.29119.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFA3 RNA is bound by 13 proteins.  







eCLIP assay for NDUFA3 is not avaliable on ENCORE database.





13 proteins are bound to NDUFA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195461011654610132+3'-UTR,CDS,intron-Distal,intron-Proximal4.5359119.35904K562YBX3
chr195460924154609283+3'-UTR,CDS4.8336123.69205K562YBX3
chr195460924954609319+3'-UTR,CDS,intron-Proximal4.4083112.35914K562PABPC4
chr195460924054609249+3'-UTR,CDS,intron-Proximal5.561733.95647K562PABPC4
chr195461169054611784+3'-UTR,CDS,intron-Proximal3.127683.39477K562BUD13
chr195460924054609319+3'-UTR,CDS,intron-Proximal3.347668.50909HepG2LARP4
chr195460928354609307+3'-UTR,CDS4.9265527.22904K562YBX3
chr195461013754610186+3'-UTR,CDS,intron-Distal3.4672910.23390K562YBX3
chr195460919154609250+3'-UTR,CDS,intron-Proximal4.180394.84268K562SF3B4
chr195461033454610446+3'-UTR,intron-Distal,intron-Proximal3.384433.76553K562PRPF8
chr195460919554609246+3'-UTR,CDS,intron-Proximal4.128263.05889HepG2SF3B4
chr195461033154610405+3'-UTR,intron-Distal,intron-Proximal3.412614.19039HepG2PTBP1
chr195460930754609318+3'-UTR,CDS4.2428419.58122K562YBX3
chr195460642154606498+5'-UTR,CDS,intron-Proximal4.2709215.56247K562DDX3X
chr195460643054606497+5'-UTR,CDS,intron-Proximal3.477253.28764HepG2LARP4
chr195460642254606499+5'-UTR,CDS,intron-Proximal5.5761511.30955K562PABPC4
chr195460643054606501+5'-UTR,CDS,intron-Proximal3.177343.00343HepG2GRWD1
chr195460642554606497+5'-UTR,CDS,intron-Proximal4.786964.65483K562APOBEC3C
chr195461098854611135+intron-Distal6.8061518.22263K562PTBP1
chr195461105454611192+intron-Distal3.819626.21080HepG2PCBP2
chr195461127854611362+intron-Distal3.727645.34579HepG2HNRNPK
chr195461122054611278+intron-Distal3.746796.33671HepG2HNRNPK
chr195460651554606636+intron-Distal,intron-Proximal4.111374.10192HepG2HNRNPK
chr195460654354606667+intron-Distal,intron-Proximal4.143684.08723K562HNRNPK
chr195461114354611220+intron-Distal5.3384910.60598HepG2HNRNPK
chr195461102454611117+intron-Distal4.8301411.22811HepG2PTBP1
chr195460984054609935+intron-Distal,intron-Proximal5.070306.08961HepG2PTBP1
chr195461110754611217+intron-Distal3.072624.63914K562HNRNPK
chr195461098054611024+intron-Distal3.922343.03891HepG2PTBP1
chr195460987754609978+intron-Distal,intron-Proximal4.830324.90095K562PTBP1
chr195461212254612171+intron-Proximal4.616374.45977HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFA3 is not available on ENCORE database.

  • 88 RBPs can affect the levels of NDUFA3.  








The Knockdown/knockout RNA-Seq assay for NDUFA3 is not available on ENCORE database.





88 RBPs can affect the gene expression of NDUFA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFA3ENSG00000170906.11747.09690449.168300.733903.044002.48910HepG2AKAP1
NDUFA3ENSG00000170906.11322.56870214.363400.589402.569801.66920HepG2BCCIP
NDUFA3ENSG00000170906.11398.86210160.761401.310909.988908.94400HepG2BOP1
NDUFA3ENSG00000170906.11359.81910201.276900.838004.172603.22790HepG2CNOT7
NDUFA3ENSG00000170906.11124.53550219.29840-0.816303.553701.94050HepG2CSTF2T
NDUFA3ENSG00000170906.11442.70110310.591500.511202.660901.93110HepG2DAZAP1
NDUFA3ENSG00000170906.11352.83510252.763300.481103.597002.66200HepG2DDX19B
NDUFA3ENSG00000170906.11296.74080202.053200.554403.116301.89310HepG2DDX1
NDUFA3ENSG00000170906.11145.58600231.11710-0.666803.291202.29130HepG2DDX24
NDUFA3ENSG00000170906.11386.72250210.762700.875605.327404.29820HepG2DDX55
NDUFA3ENSG00000170906.11287.30410198.122400.536103.139602.39480HepG2DNAJC21
NDUFA3ENSG00000170906.11294.97850196.383700.586804.293703.51410HepG2DNAJC2
NDUFA3ENSG00000170906.11284.23240416.26060-0.550404.454203.72450HepG2ETF1
NDUFA3ENSG00000170906.11279.40730200.020600.482102.202101.62070HepG2HNRNPA1
NDUFA3ENSG00000170906.11414.27770322.444200.361402.446101.76940HepG2HNRNPF
NDUFA3ENSG00000170906.11397.22340282.872100.489702.015201.42810HepG2HNRNPL
NDUFA3ENSG00000170906.11252.69010159.621500.662602.945402.29910HepG2HNRNPLL
NDUFA3ENSG00000170906.11346.11390221.018300.647005.099504.29630HepG2HNRNPU
NDUFA3ENSG00000170906.11431.60800225.762300.9348012.1542010.74030HepG2ILF2
NDUFA3ENSG00000170906.11173.83600351.81940-1.0171010.383409.32770HepG2PCBP1
NDUFA3ENSG00000170906.11458.82110312.207000.555302.913202.30840HepG2PUM1
NDUFA3ENSG00000170906.11267.23350371.08380-0.473602.905602.27530HepG2RECQL
NDUFA3ENSG00000170906.11372.13950196.824500.918809.759208.66380HepG2SAFB2
NDUFA3ENSG00000170906.11444.65920310.866100.516302.210801.60700HepG2SF3A3
NDUFA3ENSG00000170906.11343.92450213.723300.686203.304702.24820HepG2SMNDC1
NDUFA3ENSG00000170906.11235.62260389.03120-0.723405.741405.12190HepG2SRSF1
NDUFA3ENSG00000170906.11226.83390316.50510-0.480602.951102.38490HepG2SRSF9
NDUFA3ENSG00000170906.11454.87710330.209500.462002.207601.64070HepG2SUCLG1
NDUFA3ENSG00000170906.11369.44250264.640900.481202.431101.54570HepG2SUPT6H
NDUFA3ENSG00000170906.11327.63400209.812800.642903.003102.30200HepG2SUPV3L1
NDUFA3ENSG00000170906.11266.48080155.661800.775504.200703.33090HepG2TARDBP
NDUFA3ENSG00000170906.11240.97150321.30160-0.415102.145601.40790HepG2TIA1
NDUFA3ENSG00000170906.11334.39870214.747200.638804.411903.81100HepG2TIAL1
NDUFA3ENSG00000170906.11316.19780216.681200.545203.795203.15700HepG2TRIM56
NDUFA3ENSG00000170906.11309.41260206.537700.583002.647501.93860HepG2XRN2
NDUFA3ENSG00000170906.11409.12530313.420800.384302.511701.86650HepG2ZC3H8
NDUFA3ENSG00000170906.111336.97350823.942400.6983014.0463012.87150K562AGGF1
NDUFA3ENSG00000170906.111163.73220905.381500.362102.940601.91750K562AKAP8
NDUFA3ENSG00000170906.111347.31390857.347800.652004.091703.29510K562AKAP8L
NDUFA3ENSG00000170906.11468.79850771.90780-0.719506.696905.84820K562AQR
NDUFA3ENSG00000170906.11997.667401318.38320-0.402102.546501.61090K562CELF1
NDUFA3ENSG00000170906.11532.88150386.556300.463003.375802.20960K562DDX3X
NDUFA3ENSG00000170906.11477.90750716.36000-0.584004.935603.12940K562DNAJC21
NDUFA3ENSG00000170906.11595.59530745.19310-0.323302.078901.44000K562EIF2S2
NDUFA3ENSG00000170906.11637.62580422.672400.593104.055201.71120K562EIF3H
NDUFA3ENSG00000170906.11609.61130403.847300.594004.964803.86190K562EIF4A3
NDUFA3ENSG00000170906.11541.93760363.678000.575405.498703.78490K562EIF4B
NDUFA3ENSG00000170906.11500.24900352.512000.504903.516802.03130K562EWSR1
NDUFA3ENSG00000170906.11689.78150499.642100.465103.487802.52680K562FIP1L1
NDUFA3ENSG00000170906.11338.08920505.01280-0.578903.742402.40370K562FKBP4
NDUFA3ENSG00000170906.11527.86710380.988500.470303.821001.68650K562FUBP3
NDUFA3ENSG00000170906.1124.36180159.87960-2.7143017.8511015.63590K562G3BP2
NDUFA3ENSG00000170906.11688.97040410.994800.745206.354304.85510K562HNRNPM
NDUFA3ENSG00000170906.11553.46020796.70100-0.525605.775504.47130K562HNRNPU
NDUFA3ENSG00000170906.111007.00050677.363600.572005.537104.42930K562HSPD1
NDUFA3ENSG00000170906.11559.21880288.967000.952408.027005.92170K562IGF2BP2
NDUFA3ENSG00000170906.11369.79600719.07050-0.959403.324401.74460K562ILF2
NDUFA3ENSG00000170906.11467.10950672.60870-0.526003.886202.12230K562KHDRBS1
NDUFA3ENSG00000170906.11258.56220383.70600-0.569502.683501.76750K562KRR1
NDUFA3ENSG00000170906.11856.77990589.805000.538604.422702.48930K562LIN28B
NDUFA3ENSG00000170906.11687.64030518.577600.407002.875901.31870K562LSM11
NDUFA3ENSG00000170906.11420.27850303.565600.469202.915602.05200K562MAGOH
NDUFA3ENSG00000170906.11442.13610302.930400.545403.976502.85480K562MATR3
NDUFA3ENSG00000170906.11588.24390764.08140-0.377303.412402.51910K562MTPAP
NDUFA3ENSG00000170906.11677.11750848.90600-0.326203.395902.57720K562NSUN2
NDUFA3ENSG00000170906.111308.02820645.635501.018506.011504.38010K562PABPN1
NDUFA3ENSG00000170906.11927.41350567.650600.708107.865605.42180K562PHF6
NDUFA3ENSG00000170906.111150.35140567.238801.019905.216104.03260K562PPIG
NDUFA3ENSG00000170906.11470.43020333.047500.498202.269401.58690K562PRPF8
NDUFA3ENSG00000170906.11856.16500521.272800.715807.054905.49360K562PSIP1
NDUFA3ENSG00000170906.11408.92050294.942500.471303.098502.40020K562PTBP1
NDUFA3ENSG00000170906.11952.698901169.57660-0.295902.398901.64090K562PUF60
NDUFA3ENSG00000170906.111431.45940850.265500.751409.877308.89920K562PUS1
NDUFA3ENSG00000170906.111210.06710828.445900.546507.411706.47270K562RBM15
NDUFA3ENSG00000170906.11706.47300475.703400.570505.326803.94420K562RCC2
NDUFA3ENSG00000170906.11413.53580297.560300.474702.719401.63600K562NELFE
NDUFA3ENSG00000170906.11593.97000436.115300.445602.352601.43820K562RPS3
NDUFA3ENSG00000170906.11488.97560284.894300.779204.495802.47690K562SERBP1
NDUFA3ENSG00000170906.11296.93150427.37660-0.525402.295401.41830K562SF3B1
NDUFA3ENSG00000170906.11278.49890166.127400.745305.081103.90430K562SF3B4
NDUFA3ENSG00000170906.11607.14210450.942800.429002.791901.76170K562SRFBP1
NDUFA3ENSG00000170906.11518.82020332.720900.640804.476402.34540K562SRP68
NDUFA3ENSG00000170906.11694.11800858.28880-0.306302.831701.88740K562SRPK2
NDUFA3ENSG00000170906.11616.03680420.956500.549204.191502.85430K562SRSF4
NDUFA3ENSG00000170906.11461.17240273.121800.755706.368804.66570K562SRSF5
NDUFA3ENSG00000170906.11478.90250322.258600.571403.130902.04880K562SUPV3L1
NDUFA3ENSG00000170906.1161.83950156.93070-1.343503.238401.60900K562TAF15
NDUFA3ENSG00000170906.11475.09370292.614300.699105.437004.42880K562TARDBP
NDUFA3ENSG00000170906.11472.52000282.267600.743206.651205.29810K562TIA1
NDUFA3ENSG00000170906.11699.53310501.364000.480403.053802.06570K562TIAL1
NDUFA3ENSG00000170906.11480.22350277.061400.793406.766504.87370K562TRA2A
NDUFA3ENSG00000170906.1176.73750159.96110-1.059705.652704.50400K562U2AF2
NDUFA3ENSG00000170906.11625.32320900.11750-0.525506.991305.90870K562UPF1
NDUFA3ENSG00000170906.11575.02460770.19470-0.421603.355902.39650K562WDR3
NDUFA3ENSG00000170906.11715.77650914.62330-0.353702.613001.36380K562WRN
NDUFA3ENSG00000170906.11489.44460347.569800.493702.518301.38080K562XRN2
NDUFA3ENSG00000170906.11653.22910869.55280-0.412703.254802.31000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFA3 is not available on ENCORE database.





8 RBPs can affect the splicing of NDUFA3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFA3ENSG00000170906.11chr19+546096595460975354609240546093185461007054610299-0.635000.000840.01056excludedK562AQR
SENDUFA3ENSG00000170906.11chr19+5460965954609753546092405460931854610117546102770.053000.000150.02433includedHepG2SSB
SENDUFA3ENSG00000170906.11chr19+5460890354609010546064215460649654609240546093180.130000.000000.00137includedHepG2RBM5
SENDUFA3ENSG00000170906.11chr19+5460890354609010546064215460649654609240546093180.073000.000000.00011includedK562SF3B1
SENDUFA3ENSG00000170906.11chr19+5460965954609753546092405460931854610117546102770.205000.000000.00000includedK562HNRNPC
SENDUFA3ENSG00000170906.11chr19+5460890354609010546064215460649654609240546093180.171000.000000.00000includedK562HNRNPC
A3SSNDUFA3ENSG00000170906.11chr19+5460919954609318546092405460931854606184546064960.056000.000000.00001longerHepG2U2AF2
MXENDUFA3ENSG00000170906.11chr19+5460642154606496546092405460931854606128546061965461011754610285-0.155000.000000.000252includedK562SBDS
MXENDUFA3ENSG00000170906.11chr19+5460642154606496546092405460931854606128546061965461011754610285-0.153000.000000.000062includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFA3 is not avaliable on ENCORE database.