C9orf85

General Information

Gene Name       : C9orf85
Gene ID             : ENSG00000155621.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf85)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C9orf85ENSG00000155621.1419.0915.3817.23ENCSR000AEF
HepG2C9orf85ENSG00000155621.146.919.278.09ENCSR985KAT
K562C9orf85ENSG00000155621.149.1711.8610.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf85 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C9orf85 RNA is bound by 4 proteins.  







eCLIP assay for C9orf85 is not avaliable on ENCORE database.





4 proteins are bound to C9orf85 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr97458770974587765+3'-UTR,CDS,intron-Distal4.325126.22576HepG2BCLAF1
chr97456192474562041+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.800625.70640HepG2BCLAF1
chr97452655574526769+5'-UTR,CDS,intron-Proximal4.014005.87474HepG2NCBP2
chr97452665274526774+CDS,intron-Proximal3.248333.63043HepG2GRWD1
chr97456693874566999+intron-Distal5.088806.84553HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C9orf85 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf85 is not available on ENCORE database.

  • 49 RBPs can affect the levels of C9orf85.  








The Knockdown/knockout RNA-Seq assay for C9orf85 is not available on ENCORE database.





49 RBPs can affect the gene expression of C9orf85 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf85ENSG00000155621.10296.49930427.36580-0.527402.485801.97930HepG2AKAP1
C9orf85ENSG00000155621.10143.91240212.74840-0.564002.790802.02110HepG2AKAP8L
C9orf85ENSG00000155621.10250.22600353.61570-0.499002.372901.64190HepG2ASCC1
C9orf85ENSG00000155621.10212.90700322.09120-0.597202.166701.49450HepG2CNOT7
C9orf85ENSG00000155621.10260.29430409.39790-0.653403.875103.14600HepG2DDX3X
C9orf85ENSG00000155621.10212.77740351.64870-0.724804.052603.31720HepG2DDX6
C9orf85ENSG00000155621.10130.77770214.04520-0.710803.883903.06270HepG2DNAJC21
C9orf85ENSG00000155621.10151.59650212.16650-0.485002.425901.80890HepG2DNAJC2
C9orf85ENSG00000155621.10144.46040219.72730-0.605002.364601.50990HepG2EEF2
C9orf85ENSG00000155621.10186.07390338.08080-0.861505.417604.60560HepG2EIF2S1
C9orf85ENSG00000155621.10388.49140287.465400.434402.615001.79810HepG2EIF4G1
C9orf85ENSG00000155621.10299.57410390.30280-0.381702.078501.54220HepG2ETF1
C9orf85ENSG00000155621.10251.78520376.93440-0.582103.133802.39770HepG2FXR1
C9orf85ENSG00000155621.10175.61760349.68680-0.993607.206606.15730HepG2G3BP1
C9orf85ENSG00000155621.10235.71780371.20480-0.655203.865602.80210HepG2G3BP2
C9orf85ENSG00000155621.10149.57580216.09590-0.530802.020201.45790HepG2HNRNPA1
C9orf85ENSG00000155621.10260.71020354.03150-0.441402.006501.40460HepG2HNRNPK
C9orf85ENSG00000155621.10184.21970355.45780-0.948306.710405.70140HepG2IGF2BP2
C9orf85ENSG00000155621.10244.27520379.18380-0.634403.300802.61750HepG2MATR3
C9orf85ENSG00000155621.10150.89210388.12200-1.3630012.3603011.07130HepG2NCBP2
C9orf85ENSG00000155621.10181.09390345.67670-0.932706.530105.43190HepG2PABPC4
C9orf85ENSG00000155621.10251.36590339.81270-0.435002.579901.98820HepG2PCBP1
C9orf85ENSG00000155621.10233.82120345.77290-0.564403.760703.14450HepG2PTBP1
C9orf85ENSG00000155621.10206.28100292.57640-0.504202.605301.95370HepG2PUM2
C9orf85ENSG00000155621.10159.56870215.66130-0.434601.963801.42570HepG2PUS1
C9orf85ENSG00000155621.10216.01670374.47890-0.793706.351405.46010HepG2QKI
C9orf85ENSG00000155621.10214.48880339.86430-0.664103.628102.86290HepG2RBM25
C9orf85ENSG00000155621.10201.28570384.81140-0.934908.705907.84440HepG2NELFE
C9orf85ENSG00000155621.10256.26770358.40070-0.483902.990402.35260HepG2RECQL
C9orf85ENSG00000155621.10196.59330323.14790-0.717003.145502.29460HepG2RPS3A
C9orf85ENSG00000155621.10155.57870247.97380-0.672504.208603.44480HepG2SMN1
C9orf85ENSG00000155621.10202.87810375.75510-0.889208.002907.29530HepG2SRSF1
C9orf85ENSG00000155621.10239.00130305.69730-0.355101.793201.33170HepG2SRSF9
C9orf85ENSG00000155621.10212.07970319.87460-0.592904.186203.58260HepG2SSB
C9orf85ENSG00000155621.10244.09510337.74490-0.468502.709002.15410HepG2TAF15
C9orf85ENSG00000155621.10177.91650239.39030-0.428202.125801.62820HepG2ZNF622
C9orf85ENSG00000155621.10378.66840245.527000.625003.301502.67170K562AQR
C9orf85ENSG00000155621.10435.13960299.915600.536804.495903.69260K562DDX47
C9orf85ENSG00000155621.10301.74030227.232400.409002.156101.39360K562DKC1
C9orf85ENSG00000155621.10217.93110147.575200.562302.515601.73400K562EIF4A3
C9orf85ENSG00000155621.10398.88840289.935300.460202.251001.56600K562GRSF1
C9orf85ENSG00000155621.10254.87750168.053200.600802.861702.25610K562HNRNPC
C9orf85ENSG00000155621.10270.34300182.802300.564402.433401.56330K562HNRNPM
C9orf85ENSG00000155621.10241.61080169.521000.511102.405801.61900K562MAGOH
C9orf85ENSG00000155621.10247.23080150.841100.712702.298401.41110K562PCBP2
C9orf85ENSG00000155621.10229.24660127.600600.845203.993703.09280K562PRPF8
C9orf85ENSG00000155621.10591.08470344.393300.779204.679203.62150K562PUF60
C9orf85ENSG00000155621.10246.02770129.957200.920704.811203.73090K562RPS19
C9orf85ENSG00000155621.10322.41250240.122300.425002.352101.68690K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf85 is not available on ENCORE database.





6 RBPs can affect the splicing of C9orf85 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC9orf85ENSG00000155621.10chr9+7453334074533471745265567452675274561921745620280.189000.000160.00422includedHepG2U2AF1
SEC9orf85ENSG00000155621.10chr9+745619217456202874526460745267527458642074586534-0.355000.000010.00211excludedHepG2PRPF8
SEC9orf85ENSG00000155621.10chr9+7455672074556850745265567452675274561921745620280.068000.001370.09437includedHepG2DDX6
SEC9orf85ENSG00000155621.10chr9+7455672074556850745265567452675274561921745620280.215000.000000.00001includedHepG2SRSF1
SEC9orf85ENSG00000155621.10chr9+7456695774567048745619217456202874586420745865340.143000.002610.05386includedHepG2SRSF1
SEC9orf85ENSG00000155621.10chr9+7455672074556850745265567452675274561921745620280.080000.000350.04690includedHepG2SSB
A3SSC9orf85ENSG00000155621.10chr9+7458758574587759745876077458775974586420745865340.096000.001100.00758longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C9orf85 is not avaliable on ENCORE database.