GBAS

General Information

Gene Name       : GBAS
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GBAS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GBAS is not avaliable on ENCORE database.



Proteins bound to RNA
  • GBAS RNA is bound by 15 proteins.  







eCLIP assay for GBAS is not avaliable on ENCORE database.





15 proteins are bound to GBAS RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr75606504756065125+3'-UTR,CDS,intron-Proximal3.223453.05161HepG2PPIG
chr75604986656049987+3'-UTR,CDS,intron-Distal,intron-Proximal3.230696.65588K562AQR
chr75606685656066917+3'-UTR3.247396.12995K562PUM2
chr75604989456049965+3'-UTR,CDS,intron-Distal,intron-Proximal3.837625.06180HepG2BCLAF1
chr75604581756045878+3'-UTR,5'-UTR,CDS,intron-Proximal3.496954.84203K562DDX3X
chr75604916456049187+3'-UTR,CDS,intron-Proximal4.655634.77152K562IGF2BP1
chr75606751256067568+3'-UTR4.239806.14390K562PABPC4
chr75606767956067751+3'-UTR3.044306.24135K562YBX3
chr75604604256046090+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.247888.11065K562IGF2BP1
chr75604600956046177+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.343297.06369K562EFTUD2
chr75604918156049248+3'-UTR,CDS3.373539.27085K562YBX3
chr75604604156046095+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.039113.45280HepG2BCLAF1
chr75601961056019716+5'-UTR,intron-Distal,intron-Proximal4.964545.17615K562AQR
chr75601958056019623+5'-UTR,intron-Distal3.973915.82148K562DDX3X
chr75603229256032395+5'-UTR,CDS,intron-Distal,intron-Proximal3.552924.00968HepG2DDX3X
chr75603229356032358+5'-UTR,CDS,intron-Distal5.533954.54356K562DDX3X
chr75605253856052542+CDS,intron-Proximal3.256768.47737K562YBX3
chr75603235856032397+CDS,intron-Distal,intron-Proximal4.006733.70637K562DDX3X
chr75605155756051561+CDS3.7904310.52461K562YBX3
chr75603237256032480+CDS,intron-Distal,intron-Proximal4.521533.59236HepG2AQR
chr75605254256052559+CDS3.050566.67638K562YBX3
chr75605250156052570+CDS,intron-Proximal4.546525.32906HepG2AQR
chr75605154356051557+CDS3.409169.61197K562YBX3
chr75602088856020955+CDS,intron-Distal3.5785613.39743K562DDX3X
chr75604876856048814+intron-Distal4.0408612.56603HepG2PTBP1
chr75603696456037057+intron-Distal3.815793.31709K562ILF3
chr75602100556021082+CDS,intron-Distal,intron-Proximal3.267203.20886K562PRPF8
chr75604873056048820+intron-Distal4.3745718.59467K562PTBP1
chr75604931356049443+intron-Distal,intron-Proximal3.365203.48890K562KHSRP
chr75602087156020888+5'-UTR,CDS,intron-Distal,intron-Proximal4.092726.02664K562DDX3X
chr75604728756047379+intron-Distal,intron-Proximal4.796764.67693K562PTBP1
chr75604870656048768+intron-Distal3.176235.65555HepG2PTBP1
chr75604614956046247+intron-Distal,intron-Proximal3.369003.35103HepG2QKI
chr75604599556046043+intron-Proximal4.700714.69961K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GBAS is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GBAS is not available on ENCORE database.

  • 114 RBPs can affect the levels of GBAS.  








The Knockdown/knockout RNA-Seq assay for GBAS is not available on ENCORE database.





114 RBPs can affect the gene expression of GBAS :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GBASENSG00000146729.51155.37480984.126100.231302.105501.56080HepG2ACO1
GBASENSG00000146729.5879.851101603.30230-0.8657011.494809.97820HepG2ASCC1
GBASENSG00000146729.51940.040701530.702400.341805.100704.21440HepG2AUH
GBASENSG00000146729.5540.34890874.39200-0.694404.828103.58830HepG2BCCIP
GBASENSG00000146729.5369.88910759.85950-1.0386010.347008.75240HepG2BCLAF1
GBASENSG00000146729.5566.99530805.44290-0.506404.097903.38560HepG2BOP1
GBASENSG00000146729.5770.274601523.23640-0.9837014.6168013.00290HepG2CIRBP
GBASENSG00000146729.5825.63610983.99640-0.253102.453001.81920HepG2CKAP4
GBASENSG00000146729.5463.98210739.44960-0.672405.902704.93190HepG2CPSF6
GBASENSG00000146729.51263.011401514.45850-0.261902.655802.02420HepG2CELF1
GBASENSG00000146729.51157.955001628.46540-0.4919010.166108.88610HepG2DAZAP1
GBASENSG00000146729.5715.84140910.21430-0.346604.010903.02980HepG2DDX19B
GBASENSG00000146729.5628.30840978.24830-0.638707.095106.06050HepG2DDX21
GBASENSG00000146729.5440.106301856.22540-2.0764054.3332051.89730HepG2DDX3X
GBASENSG00000146729.5628.68140859.66660-0.451402.252201.54740HepG2DDX55
GBASENSG00000146729.5815.800901100.05920-0.431303.139302.06920HepG2DDX5
GBASENSG00000146729.5612.79530941.56380-0.619709.142708.05410HepG2DKC1
GBASENSG00000146729.5678.50870899.81820-0.407305.305104.44640HepG2DNAJC2
GBASENSG00000146729.5499.990501532.87160-1.6163033.2621031.36570HepG2EIF2S1
GBASENSG00000146729.5587.95850819.93820-0.479803.001402.06460HepG2EIF3D
GBASENSG00000146729.5855.781201694.08730-0.9852012.7765011.42970HepG2EIF4A3
GBASENSG00000146729.5384.154901649.27130-2.1021038.3738036.03120HepG2EIF4B
GBASENSG00000146729.51114.537101538.96780-0.465504.465403.44670HepG2EIF4G2
GBASENSG00000146729.51528.132501757.42610-0.201701.855601.34260HepG2ETF1
GBASENSG00000146729.5943.00680715.595700.398002.916401.61380HepG2FKBP4
GBASENSG00000146729.5792.915301116.29580-0.493504.889603.86010HepG2FUBP3
GBASENSG00000146729.5952.509301709.00880-0.8434011.237609.93680HepG2FXR1
GBASENSG00000146729.51108.373801585.49000-0.516504.318303.49610HepG2G3BP1
GBASENSG00000146729.51020.235201683.02610-0.722208.705307.11480HepG2G3BP2
GBASENSG00000146729.5379.12890730.06120-0.9453010.818109.12410HepG2GEMIN5
GBASENSG00000146729.5383.35570838.24870-1.1287013.2878011.98590HepG2GPKOW
GBASENSG00000146729.5558.725601019.46970-0.8676011.4609010.13150HepG2HNRNPC
GBASENSG00000146729.5790.62650953.52700-0.270302.315601.65510HepG2HNRNPF
GBASENSG00000146729.51268.772801483.42270-0.225502.650801.99100HepG2HNRNPL
GBASENSG00000146729.5574.90720799.95390-0.476603.332302.64860HepG2HNRNPLL
GBASENSG00000146729.51206.608801012.729500.252602.548701.96670HepG2HNRNPU
GBASENSG00000146729.5736.429401611.66360-1.1299018.6034017.02950HepG2IGF2BP2
GBASENSG00000146729.5975.980101512.28500-0.631802.455101.53520HepG2IGF2BP3
GBASENSG00000146729.5651.497101034.46950-0.6671014.1136012.60000HepG2ILF2
GBASENSG00000146729.5723.940701052.42590-0.539803.750902.32710HepG2KHDRBS1
GBASENSG00000146729.5919.949601620.96920-0.817207.877606.09880HepG2KHSRP
GBASENSG00000146729.5982.151201333.97310-0.441702.512001.33190HepG2KRR1
GBASENSG00000146729.51079.032801499.92930-0.475203.168302.27710HepG2LARP4
GBASENSG00000146729.5501.275401039.21240-1.0518015.5463012.92300HepG2LIN28B
GBASENSG00000146729.5746.722601709.60430-1.1950020.3634018.66790HepG2MAGOH
GBASENSG00000146729.51258.752601719.21410-0.449803.284402.60220HepG2MATR3
GBASENSG00000146729.5813.718601034.77020-0.346702.980202.14130HepG2MSI2
GBASENSG00000146729.5432.023601759.74490-2.0262049.5933047.15860HepG2NCBP2
GBASENSG00000146729.5997.160901614.78020-0.6954012.8281011.24130HepG2NOL12
GBASENSG00000146729.5606.068001009.50960-0.736104.357103.22920HepG2PABPC1
GBASENSG00000146729.5653.481301567.32210-1.2621021.6810019.71720HepG2PABPC4
GBASENSG00000146729.5750.253601536.26580-1.0340018.8876017.53340HepG2PCBP1
GBASENSG00000146729.5747.99560909.54000-0.282102.416201.68730HepG2PRPF4
GBASENSG00000146729.5777.470801563.11470-1.0076017.7512016.59500HepG2PTBP1
GBASENSG00000146729.51267.225001541.43490-0.282602.220501.67870HepG2PUF60
GBASENSG00000146729.51168.585401636.28470-0.4857010.551209.55170HepG2PUM1
GBASENSG00000146729.51019.398001635.09970-0.6817011.6251010.30070HepG2PUM2
GBASENSG00000146729.5688.403801002.40860-0.542108.552407.57000HepG2PUS1
GBASENSG00000146729.51415.831701693.09050-0.258001.966601.42590HepG2QKI
GBASENSG00000146729.51165.801701468.88820-0.333403.784403.20330HepG2RBM22
GBASENSG00000146729.51064.540801536.51340-0.529406.769105.75530HepG2RBM25
GBASENSG00000146729.51019.587101739.67410-0.7708010.620909.68860HepG2NELFE
GBASENSG00000146729.51178.848701620.12940-0.458706.066105.20250HepG2RECQL
GBASENSG00000146729.5606.37390797.79940-0.395802.891102.26500HepG2RPS19
GBASENSG00000146729.5673.71860901.87970-0.420805.118204.28980HepG2SAFB2
GBASENSG00000146729.5621.19850800.77390-0.366302.162701.32800HepG2SERBP1
GBASENSG00000146729.5626.187001195.35620-0.932809.105607.82830HepG2SF3A3
GBASENSG00000146729.5494.22080791.81070-0.680006.484905.44170HepG2SF3B1
GBASENSG00000146729.5658.519501627.57140-1.3054024.8520023.38280HepG2SF3B4
GBASENSG00000146729.51195.577401477.96180-0.305904.230903.38920HepG2SLBP
GBASENSG00000146729.5923.175601698.76390-0.8798013.8448012.96080HepG2SRSF1
GBASENSG00000146729.51102.800501521.92260-0.464707.591406.62230HepG2SRSF5
GBASENSG00000146729.5993.152301381.97610-0.476605.755205.01040HepG2SRSF9
GBASENSG00000146729.51172.752301440.47690-0.296603.484002.92360HepG2SSB
GBASENSG00000146729.5572.64450964.77500-0.752606.383104.65200HepG2STIP1
GBASENSG00000146729.51230.716601730.86230-0.4920010.305809.23450HepG2SUCLG1
GBASENSG00000146729.5580.86340863.32890-0.571706.229704.85540HepG2SUPT6H
GBASENSG00000146729.5631.67420855.85150-0.438202.087901.48930HepG2SUPV3L1
GBASENSG00000146729.51915.096001526.725900.326903.752803.11640HepG2TAF15
GBASENSG00000146729.51083.006401403.05400-0.373502.232701.48010HepG2TIA1
GBASENSG00000146729.5709.14010992.85300-0.485506.727205.91530HepG2TRIM56
GBASENSG00000146729.5420.31410651.56280-0.632404.341702.39080HepG2TROVE2
GBASENSG00000146729.5578.744801093.82610-0.9184012.6518011.27530HepG2U2AF1
GBASENSG00000146729.5648.307401023.48480-0.6587011.2522010.17610HepG2UTP3
GBASENSG00000146729.5606.47260993.40420-0.711905.399803.86400HepG2XPO5
GBASENSG00000146729.51214.88130897.607900.436606.734005.76150HepG2ZC3H8
GBASENSG00000146729.52700.050201870.119000.5298012.4509011.34100K562AGGF1
GBASENSG00000146729.52491.537402054.958100.277802.277301.39840K562AKAP8
GBASENSG00000146729.51217.227202436.15930-1.0010018.9967017.62610K562AQR
GBASENSG00000146729.51172.765001572.28580-0.422905.558503.56880K562BCCIP
GBASENSG00000146729.51227.422201519.24940-0.307703.612602.50910K562BCLAF1
GBASENSG00000146729.51037.818801532.22620-0.562103.212702.27130K562BOP1
GBASENSG00000146729.51114.258701629.18730-0.548107.218005.94330K562CPSF6
GBASENSG00000146729.5944.125801152.57670-0.287802.430601.44870K562CSTF2
GBASENSG00000146729.51670.526802465.92180-0.5618012.9723011.67040K562DDX47
GBASENSG00000146729.52631.019802094.000200.329304.584403.41600K562DKC1
GBASENSG00000146729.5747.056901224.26580-0.712608.157206.51750K562EFTUD2
GBASENSG00000146729.51345.466101684.59210-0.324303.812102.98930K562EIF2S2
GBASENSG00000146729.5586.44790869.79580-0.568702.922501.88660K562EIF3A
GBASENSG00000146729.5713.877401310.92860-0.876809.229707.19770K562EIF3D
GBASENSG00000146729.51041.567401430.22790-0.457505.738404.60660K562EIF3G
GBASENSG00000146729.5791.278001382.05270-0.8046016.2023013.36060K562EIF4B
GBASENSG00000146729.5894.211701657.67640-0.8905013.9775011.99410K562FMR1
GBASENSG00000146729.5941.435701405.03760-0.577705.582504.23250K562FTO
GBASENSG00000146729.5929.664901595.98420-0.7797017.2359015.83840K562FXR1
GBASENSG00000146729.5756.812501227.39700-0.697607.228404.92920K562GEMIN5
GBASENSG00000146729.5925.607801555.46590-0.7489011.185509.56720K562GPKOW
GBASENSG00000146729.5806.690401746.52220-1.1144024.9246023.20720K562HNRNPC
GBASENSG00000146729.51229.428601559.61700-0.343202.938801.76160K562HNRNPF
GBASENSG00000146729.52654.095702065.144500.361903.397502.47170K562KIF1C
GBASENSG00000146729.5951.839001328.19230-0.480703.049702.06510K562KRR1
GBASENSG00000146729.51109.701801771.30830-0.674607.766605.13580K562LIN28B
GBASENSG00000146729.51585.945802034.97040-0.359703.487802.53860K562MAGOH
GBASENSG00000146729.51452.882701735.28780-0.256303.129102.26970K562MTPAP
GBASENSG00000146729.52176.582801621.581200.424602.700401.82990K562NAA15
GBASENSG00000146729.51242.614701532.44110-0.302502.708001.49300K562NCBP2
GBASENSG00000146729.51204.826101810.76700-0.587806.787605.23470K562PCBP2
GBASENSG00000146729.5828.326801191.34880-0.524304.596303.63070K562PRPF8
GBASENSG00000146729.51238.639401565.93190-0.338302.781601.87500K562PSIP1
GBASENSG00000146729.51339.781301977.04090-0.561305.031804.15930K562PTBP1
GBASENSG00000146729.52496.942403549.95720-0.507606.838005.55390K562PUF60
GBASENSG00000146729.52626.443001929.872500.444504.542803.87030K562PUS1
GBASENSG00000146729.52278.196501880.340800.276803.005802.39260K562RBM15
GBASENSG00000146729.51261.814701896.18670-0.587605.247904.04630K562RBM22
GBASENSG00000146729.51045.545501428.67040-0.450404.892403.57300K562RCC2
GBASENSG00000146729.51499.050301995.33020-0.412603.281902.08180K562NELFE
GBASENSG00000146729.5847.322701213.60320-0.518303.763402.80790K562RPS19
GBASENSG00000146729.51023.571601393.78390-0.445403.442102.31490K562RPS3
GBASENSG00000146729.51086.129701902.50920-0.8087019.8146017.79330K562SF3A3
GBASENSG00000146729.5878.980901479.32880-0.751008.044206.33020K562SF3B1
GBASENSG00000146729.51232.656901827.49800-0.568108.812607.23700K562SF3B4
GBASENSG00000146729.51028.191601354.34540-0.397503.441902.26440K562SRFBP1
GBASENSG00000146729.51286.768201938.06870-0.590905.769504.75590K562SRSF1
GBASENSG00000146729.51074.761501345.66030-0.324302.615601.59830K562SRSF4
GBASENSG00000146729.51447.880501830.13580-0.338002.386501.42190K562SRSF5
GBASENSG00000146729.5885.136801153.62670-0.382202.353501.41960K562SUPV3L1
GBASENSG00000146729.51092.340801961.64700-0.8446011.546709.94190K562TARDBP
GBASENSG00000146729.51364.105501892.17880-0.472105.450304.24370K562TIA1
GBASENSG00000146729.51126.896601506.16940-0.418503.209302.19530K562TIAL1
GBASENSG00000146729.51467.664701856.32840-0.338902.797401.69820K562TRA2A
GBASENSG00000146729.51143.932501600.06600-0.484104.999403.63630K562TRIM56
GBASENSG00000146729.51433.531701759.38500-0.295502.784601.97870K562U2AF2
GBASENSG00000146729.51651.473902044.35290-0.307904.543803.64690K562UPF1
GBASENSG00000146729.51362.873501884.42350-0.467503.545402.17890K562UTP3
GBASENSG00000146729.51443.721401819.06490-0.333405.295104.16090K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GBAS is not available on ENCORE database.





17 RBPs can affect the splicing of GBAS :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.095000.000000.00002excludedK562SF3B4
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.063000.000050.00235excludedHepG2HNRNPK
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049260-0.075000.001310.01768excludedHepG2U2AF2
SEGBASENSG00000146729.5chr7+560499025604997356049165560492605605142056051561-0.091000.001380.01849excludedHepG2U2AF2
SEGBASENSG00000146729.5chr7+5604745256047579560460425604608856049165560492600.061000.000000.00002includedK562AQR
SEGBASENSG00000146729.5chr7+560208715602101156019485560196235604581856045958-0.142000.000030.00054excludedK562AQR
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.071000.000080.00145excludedK562AQR
SEGBASENSG00000146729.5chr7+560499025604997356049142560492605605142056051561-0.051000.009930.08082excludedK562AQR
SEGBASENSG00000146729.5chr7+5605952056059577560525395605257156062586560626650.356000.000000.00001includedHepG2DDX3X
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.081000.000150.01431excludedHepG2NCBP2
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049260-0.086000.000510.02776excludedHepG2SFPQ
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.089000.000600.03491excludedK562EFTUD2
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049260-0.081000.000000.00034excludedHepG2MATR3
SEGBASENSG00000146729.5chr7+5605952056059577560525395605257156062586560626650.149000.000290.00933includedHepG2SRSF1
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049191-0.111000.000000.00033excludedHepG2SF3A3
SEGBASENSG00000146729.5chr7+5605949456059577560525045605257156062586560626810.106000.000630.06988includedHepG2SSB
SEGBASENSG00000146729.5chr7+560499025604997356046599560492605605142056051561-0.069000.001690.06973excludedHepG2SF3B4
SEGBASENSG00000146729.5chr7+560460425604608856045818560459585604916556049260-0.053000.000330.01963excludedK562HNRNPK
SEGBASENSG00000146729.5chr7+5605952056059577560525395605257156062586560626810.199000.000070.00449includedHepG2HNRNPC
SEGBASENSG00000146729.5chr7+5604745556047579560460425604608856049165560491960.059000.000960.09346includedHepG2KHSRP
A3SSGBASENSG00000146729.5chr7+5605250456052571560525395605257156051420560515610.059000.000020.00343longerHepG2SRSF1
A3SSGBASENSG00000146729.5chr7+5605250456052571560525395605257156051420560515610.068000.000110.00435longerHepG2U2AF2
A3SSGBASENSG00000146729.5chr7+5605250456052571560525395605257156051420560515610.075000.000540.07593longerK562SF3B1
MXEGBASENSG00000146729.5chr7+5605250456052571560595205605957756051420560515615606258656062681-0.079000.000400.011172includedHepG2SRSF1
MXEGBASENSG00000146729.5chr7+5605250456052571560595205605957756051420560515615606258656062681-0.086000.000590.024882includedHepG2SF3B4
MXEGBASENSG00000146729.5chr7+56049165560492605604990256049973560458185604595856051420560515610.175000.000070.002301includedK562SF3B4
MXEGBASENSG00000146729.5chr7+56049165560492605604990256049973560458185604595856051420560515610.129000.000060.006211includedHepG2DDX6
MXEGBASENSG00000146729.5chr7+56049165560492605604990256049973560458185604595856051420560515610.131000.000110.013241includedK562HNRNPK
MXEGBASENSG00000146729.5chr7+5604990256049973560514205605156156049165560492605606670056067874-0.091000.001220.026992includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GBAS is not avaliable on ENCORE database.