TMEM107

General Information

Gene Name       : TMEM107
Gene ID             : ENSG00000179029.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM107)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM107ENSG00000179029.144.725.375.04ENCSR000AEF
HepG2TMEM107ENSG00000179029.145.734.224.97ENCSR985KAT
K562TMEM107ENSG00000179029.147.034.765.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM107 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM107 RNA is bound by 12 proteins.  







eCLIP assay for TMEM107 is not avaliable on ENCORE database.





12 proteins are bound to TMEM107 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1780768098076824-3'-UTR,intron-Distal3.0300217.12552K562SMNDC1
chr1780768218076824-3'-UTR,intron-Distal3.83631400.00000HepG2NOLC1
chr1780767758076789-3'-UTR,intron-Distal3.8860449.24610K562SMNDC1
chr1780768258076852-3'-UTR,intron-Distal5.26107400.00000K562AATF
chr1780767588076802-3'-UTR,intron-Distal4.14041400.00000K562AATF
chr1780768138076864-3'-UTR,intron-Distal3.0969136.57482K562NIPBL
chr1780767728076804-3'-UTR,intron-Distal3.0493231.63695K562PHF6
chr1780768468076861-3'-UTR,intron-Distal3.90621400.00000HepG2NOLC1
chr1780768608076900-3'-UTR,intron-Distal3.7020755.06895HepG2DKC1
chr1780768298076834-3'-UTR,intron-Distal3.79684400.00000HepG2NOLC1
chr1780768478076860-3'-UTR,intron-Distal3.1822287.54754HepG2DKC1
chr1780767878076821-3'-UTR,intron-Distal3.37716400.00000HepG2LARP7
chr1780769018076906-3'-UTR,intron-Distal3.4404226.03396HepG2SSB
chr1780768098076813-3'-UTR,intron-Distal4.84080400.00000K562AATF
chr1780768688076903-3'-UTR,intron-Distal3.7657044.86538K562PHF6
chr1780767988076805-3'-UTR,intron-Distal4.22875400.00000HepG2NOLC1
chr1780767588076771-3'-UTR,intron-Distal3.949833.85523K562NIPBL
chr1780768618076900-3'-UTR,intron-Distal4.1278961.03531HepG2NIP7
chr1780768348076840-3'-UTR,intron-Distal3.88094400.00000HepG2NOLC1
chr1780767688076790-3'-UTR,intron-Distal4.93361400.00000HepG2NOLC1
chr1780768128076814-3'-UTR,intron-Distal3.76972400.00000HepG2NOLC1
chr1780768618076869-3'-UTR,intron-Distal3.74694400.00000HepG2NOLC1
chr1780768268076843-3'-UTR,intron-Distal3.2651976.40215K562PHF6
chr1780767468076775-3'-UTR,intron-Distal4.0923848.98022K562SMNDC1
chr1780767928076798-3'-UTR,intron-Distal4.63761400.00000HepG2NOLC1
chr1780767908076792-3'-UTR,intron-Distal4.87157400.00000HepG2NOLC1
chr1780768138076825-3'-UTR,intron-Distal5.14191400.00000K562AATF
chr1780768148076816-3'-UTR,intron-Distal3.77742400.00000HepG2NOLC1
chr1780767718076802-3'-UTR,intron-Distal3.5500912.36606K562NIPBL
chr1780769008076905-3'-UTR,intron-Distal6.0464030.61407HepG2NIP7
chr1780768048076826-3'-UTR,intron-Distal3.54713400.00000K562PHF6
chr1780768468076868-3'-UTR,intron-Distal3.7065575.12006K562PHF6
chr1780768728076900-3'-UTR,intron-Distal4.27116400.00000HepG2NOLC1
chr1780768168076821-3'-UTR,intron-Distal3.71191400.00000HepG2NOLC1
chr1780765648076683-3'-UTR,intron-Distal3.505234.13575K562KHSRP
chr1780767558076774-3'-UTR,intron-Distal4.424793.80189K562ZC3H8
chr1780768408076846-3'-UTR,intron-Distal3.83075400.00000HepG2NOLC1
chr1780768528076857-3'-UTR,intron-Distal5.46617400.00000K562AATF
chr1780767578076772-3'-UTR,intron-Distal3.242884.57167K562PHF6
chr1780768978076907-3'-UTR,intron-Distal3.4946429.16715K562LARP7
chr1780768698076872-3'-UTR,intron-Distal4.22587400.00000HepG2NOLC1
chr1780768088076812-3'-UTR,intron-Distal3.92127400.00000HepG2NOLC1
chr1780768598076898-3'-UTR,intron-Distal3.291917.18707K562TRA2A
chr1780768058076808-3'-UTR,intron-Distal3.81723400.00000HepG2NOLC1
chr1780768248076829-3'-UTR,intron-Distal3.90444400.00000HepG2NOLC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM107 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM107 is not available on ENCORE database.

  • 52 RBPs can affect the levels of TMEM107.  








The Knockdown/knockout RNA-Seq assay for TMEM107 is not available on ENCORE database.





52 RBPs can affect the gene expression of TMEM107 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM107ENSG00000179029.1037.4488072.39080-0.950902.644702.04780HepG2ACO1
TMEM107ENSG00000179029.1014.5122034.66950-1.256401.818101.32370HepG2BOP1
TMEM107ENSG00000179029.1028.6086060.42560-1.078702.289901.58270HepG2CALR
TMEM107ENSG00000179029.10162.6597078.731901.046704.237403.01720HepG2CCAR1
TMEM107ENSG00000179029.1027.3879072.38510-1.402204.585703.77100HepG2CKAP4
TMEM107ENSG00000179029.1067.83920112.08990-0.724502.311401.71490HepG2CELF1
TMEM107ENSG00000179029.1040.8912074.95100-0.874201.946601.41330HepG2DDX3X
TMEM107ENSG00000179029.1015.4863066.60650-2.104705.343304.40900HepG2EIF4B
TMEM107ENSG00000179029.1037.1145070.74770-0.930702.358101.58730HepG2EWSR1
TMEM107ENSG00000179029.1098.5860053.107700.892402.411301.76020HepG2HNRNPC
TMEM107ENSG00000179029.1088.8509052.756600.751902.160101.61720HepG2HNRNPU
TMEM107ENSG00000179029.1021.8270065.07120-1.575904.138303.32740HepG2IGF2BP2
TMEM107ENSG00000179029.1042.7759083.17110-0.959302.349701.58850HepG2LARP4
TMEM107ENSG00000179029.1031.8608063.27400-0.989802.165301.52140HepG2PABPC4
TMEM107ENSG00000179029.1032.3496080.22710-1.310304.201103.48040HepG2PCBP1
TMEM107ENSG00000179029.1030.4893080.37090-1.398404.359703.07450HepG2PCBP2
TMEM107ENSG00000179029.1018.1520050.49550-1.476002.884602.05970HepG2PRPF8
TMEM107ENSG00000179029.1070.29020121.10070-0.784802.881202.27910HepG2PUM1
TMEM107ENSG00000179029.1065.96790121.00950-0.875303.010202.31020HepG2PUM2
TMEM107ENSG00000179029.1033.0620077.55680-1.230102.671901.97810HepG2RAVER1
TMEM107ENSG00000179029.1023.2040080.23770-1.789906.011205.05220HepG2RBM25
TMEM107ENSG00000179029.1058.66240106.81010-0.864502.311401.41330HepG2RBM27
TMEM107ENSG00000179029.1024.0930076.18990-1.661005.049803.79540HepG2RPS10
TMEM107ENSG00000179029.1010.8528049.95020-2.202404.687403.69550HepG2RRP9
TMEM107ENSG00000179029.1029.2396081.51090-1.479103.382202.63450HepG2SF3A3
TMEM107ENSG00000179029.1039.9416084.98330-1.089303.065602.44700HepG2SF3B4
TMEM107ENSG00000179029.1045.4466091.64160-1.011803.268902.73840HepG2SRFBP1
TMEM107ENSG00000179029.1031.84520112.63840-1.822508.834007.79840HepG2SRSF5
TMEM107ENSG00000179029.1025.5288072.17900-1.499504.688604.00580HepG2SRSF9
TMEM107ENSG00000179029.1080.15060128.09620-0.676402.384301.79870HepG2SUCLG1
TMEM107ENSG00000179029.1031.3399065.16550-1.056101.998101.40940HepG2SUPV3L1
TMEM107ENSG00000179029.1055.24130111.45440-1.012603.380702.40520HepG2TUFM
TMEM107ENSG00000179029.1018.9831060.81880-1.679803.763503.03390HepG2U2AF1
TMEM107ENSG00000179029.1036.3515069.79040-0.941002.102101.56590HepG2UTP3
TMEM107ENSG00000179029.1046.1978085.29490-0.884602.305401.34020HepG2XRCC6
TMEM107ENSG00000179029.1090.3782040.293901.165304.048903.26050HepG2ZC3H8
TMEM107ENSG00000179029.1020.8523079.50230-1.930805.048304.36400HepG2ZNF622
TMEM107ENSG00000179029.10123.14900194.71390-0.661002.873702.20770K562AKAP8L
TMEM107ENSG00000179029.10143.8595086.336200.736502.705701.93090K562CPSF6
TMEM107ENSG00000179029.10184.06530308.25380-0.743903.472902.37830K562CELF1
TMEM107ENSG00000179029.1046.21000170.18780-1.8809014.0283012.67140K562DDX47
TMEM107ENSG00000179029.10301.75100120.727501.321507.565506.46390K562EIF2S2
TMEM107ENSG00000179029.1015.8332079.34180-2.325106.494504.90110K562EIF3A
TMEM107ENSG00000179029.1063.78450111.71770-0.808602.409501.45150K562EIF3D
TMEM107ENSG00000179029.1040.37880124.00690-1.618808.122906.76690K562EIF3G
TMEM107ENSG00000179029.1053.73710143.82570-1.420307.831406.88100K562FXR1
TMEM107ENSG00000179029.1096.46240162.26100-0.750302.390501.58370K562NAA15
TMEM107ENSG00000179029.1084.55410164.07560-0.956404.189402.98030K562PCBP2
TMEM107ENSG00000179029.1059.01380101.56640-0.783302.112201.45290K562PRPF8
TMEM107ENSG00000179029.10185.65950273.37820-0.558202.653401.85530K562PUF60
TMEM107ENSG00000179029.10393.28830284.901600.465002.167401.31700K562PUM2
TMEM107ENSG00000179029.10127.82150188.15150-0.557802.242901.69970K562RBM15
TMEM107ENSG00000179029.1022.58740103.43310-2.195109.443307.92110K562RPS19
TMEM107ENSG00000179029.1041.0309086.89120-1.082503.212801.51800K562SERBP1
TMEM107ENSG00000179029.1049.58200101.64730-1.035703.771002.76790K562SF3B4
TMEM107ENSG00000179029.10232.25680159.776800.539601.928201.32050K562UPF1
TMEM107ENSG00000179029.1085.29480142.18390-0.737203.063102.17340K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM107 is not available on ENCORE database.





2 RBPs can affect the splicing of TMEM107 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM107ENSG00000179029.10chr17-807927680793448077320807759080795178079634-0.361000.002740.04692excludedK562SRSF1
SETMEM107ENSG00000179029.10chr17-807927680793448077320807759080795178079634-0.365000.000190.00964excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM107 is not avaliable on ENCORE database.