PTAR1

General Information

Gene Name       : PTAR1
Gene ID             : ENSG00000188647.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PTAR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTAR1ENSG00000188647.1211.0711.5311.30ENCSR000AEF
HepG2PTAR1ENSG00000188647.1211.6518.0014.82ENCSR985KAT
K562PTAR1ENSG00000188647.1218.9216.6417.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTAR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PTAR1 RNA is bound by 20 proteins.  







eCLIP assay for PTAR1 is not avaliable on ENCORE database.





20 proteins are bound to PTAR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr97232447472324559-3'-UTR,intron-Distal4.049713.56104K562CPSF6
chr97233014672330211-3'-UTR,intron-Distal4.6751920.17197K562TARDBP
chr97232447672324560-3'-UTR,intron-Distal3.621703.38928HepG2ZC3H11A
chr97233291972332995-3'-UTR,intron-Distal,intron-Proximal4.390144.73785K562TIA1
chr97233021172330270-3'-UTR,intron-Distal5.1881519.26576K562TARDBP
chr97233310572333152-3'-UTR,intron-Distal3.018526.06877HepG2U2AF2
chr97233247972332525-3'-UTR,intron-Distal4.296223.60944K562TARDBP
chr97232452172324581-3'-UTR,intron-Distal4.3010111.86374K562KHSRP
chr97233311972333224-3'-UTR,intron-Distal3.738305.37381K562TIA1
chr97233255072332603-3'-UTR,intron-Distal3.198444.01540K562TARDBP
chr97232446072324521-3'-UTR,intron-Distal3.5728610.26632K562KHSRP
chr97233252572332550-3'-UTR,intron-Distal4.146904.13641K562TARDBP
chr97237476472374858-5'-UTR,CDS,intron-Distal,intron-Proximal3.5786711.60048K562ZNF622
chr97237476072374865-5'-UTR,CDS,intron-Distal,intron-Proximal3.040463.06763HepG2NCBP2
chr97236569472365776-CDS,intron-Distal,intron-Proximal3.367735.53307K562ZNF622
chr97234710272347168-CDS,intron-Distal3.190615.40132HepG2BCLAF1
chr97233357272333623-CDS,intron-Distal,intron-Proximal3.681026.36450HepG2U2AF2
chr97235670772356775-CDS,intron-Distal,intron-Proximal4.0801410.40438K562ZNF622
chr97233337272333484-CDS,intron-Distal,intron-Proximal3.2777211.44176HepG2BCLAF1
chr97233841372338509-CDS,intron-Distal,intron-Proximal3.970123.15006K562RBM15
chr97233326772333372-CDS,intron-Distal3.277597.20615HepG2BCLAF1
chr97233327272333333-CDS,intron-Distal3.140114.35477K562UCHL5
chr97233830472338342-CDS,intron-Distal3.858619.72545K562ZNF622
chr97237476372374845-CDS,intron-Distal3.018065.26696K562UCHL5
chr97233328272333348-CDS,intron-Distal4.1641210.37409K562ZNF622
chr97236580172365867-CDS,intron-Distal,intron-Proximal3.222676.73967K562ZNF622
chr97234912872349178-CDS,intron-Distal,intron-Proximal3.574176.03804K562U2AF2
chr97234717972347269-CDS,intron-Distal,intron-Proximal3.941928.19556HepG2BCLAF1
chr97233353972333602-CDS,intron-Distal,intron-Proximal3.319368.02162HepG2BCLAF1
chr97234912972349180-CDS,intron-Distal,intron-Proximal3.506964.97118HepG2U2AF2
chr97234913372349172-CDS,intron-Distal,intron-Proximal3.831595.56491HepG2BCLAF1
chr97234699472347091-CDS,intron-Distal,intron-Proximal4.014695.85201K562PRPF8
chr97236569472365774-CDS,intron-Distal,intron-Proximal3.385595.40132HepG2BCLAF1
chr97235670572356742-CDS,intron-Distal,intron-Proximal3.658409.83905HepG2BCLAF1
chr97234913272349181-CDS,intron-Distal,intron-Proximal4.670775.17144K562U2AF1
chr97234699672347089-CDS,intron-Distal,intron-Proximal6.1302512.49766HepG2PRPF8
chr97235674272356775-CDS,intron-Distal,intron-Proximal3.198864.61799HepG2BCLAF1
chr97233341072333487-CDS,intron-Distal,intron-Proximal3.6531413.64083K562ZNF622
chr97233823372338321-CDS,intron-Distal,intron-Proximal3.957789.50935HepG2BCLAF1
chr97233823872338304-CDS,intron-Distal,intron-Proximal3.7720512.48200K562ZNF622
chr97237466072374781-CDS,intron-Distal3.281956.29405HepG2PRPF8
chr97233846772338531-CDS,intron-Distal,intron-Proximal3.080343.55800HepG2BCLAF1
chr97233327872333411-CDS,intron-Distal3.933973.46336HepG2SRSF1
chr97233352772333595-CDS,intron-Distal,intron-Proximal4.331788.35706K562UCHL5
chr97233823372338327-CDS,intron-Distal,intron-Proximal3.173683.99124HepG2PPIG
chr97236261272362675-intron-Distal3.748556.23177HepG2SUGP2
chr97233942672339583-intron-Distal4.300754.89093HepG2TAF15
chr97235509072355181-intron-Distal4.096295.82272HepG2HNRNPL
chr97235091872351005-intron-Distal4.553613.77802HepG2U2AF2
chr97236540772365418-intron-Distal7.88089108.64709K562FASTKD2
chr97236230572362377-intron-Distal4.173698.31041HepG2SUGP2
chr97236134472361395-intron-Distal4.553544.78128HepG2SUGP2
chr97236541872365425-intron-Distal8.29593110.19189K562FASTKD2
chr97237463872374744-intron-Distal5.5962219.88158HepG2EFTUD2
chr97236542572365436-intron-Distal8.29593110.19189K562FASTKD2
chr97233936372339478-intron-Distal4.082314.10688K562KHSRP
chr97235507272355182-intron-Distal4.339125.41154K562HNRNPL
chr97236094372360996-intron-Distal4.243954.61447HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PTAR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTAR1 is not available on ENCORE database.

  • 109 RBPs can affect the levels of PTAR1.  








The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.





109 RBPs can affect the gene expression of PTAR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTAR1ENSG00000188647.81433.215601137.375200.333402.657501.60450HepG2AATF
PTAR1ENSG00000188647.81504.699601947.75760-0.372302.413301.53320HepG2ABCF1
PTAR1ENSG00000188647.81496.204402334.78960-0.642006.177405.41850HepG2AKAP1
PTAR1ENSG00000188647.81322.558401934.42190-0.548605.069204.05710HepG2AKAP8L
PTAR1ENSG00000188647.8902.755301931.88250-1.0976018.5243016.71160HepG2ASCC1
PTAR1ENSG00000188647.82334.311902670.03850-0.193902.256501.62520HepG2AUH
PTAR1ENSG00000188647.8886.751601289.43100-0.540103.717902.63270HepG2BCCIP
PTAR1ENSG00000188647.81099.320501469.61010-0.418803.742103.05670HepG2BOP1
PTAR1ENSG00000188647.81428.221101925.01790-0.430703.837903.07900HepG2CKAP4
PTAR1ENSG00000188647.81654.322303601.64390-1.1224012.1180010.55800HepG2CNOT7
PTAR1ENSG00000188647.81663.683601349.199400.302202.141501.52720HepG2CPSF6
PTAR1ENSG00000188647.81625.420602067.01430-0.346703.061202.28770HepG2DAZAP1
PTAR1ENSG00000188647.81233.407501780.58990-0.529705.474704.35330HepG2DDX19B
PTAR1ENSG00000188647.81425.732101921.11560-0.430203.138302.48420HepG2DDX6
PTAR1ENSG00000188647.81092.998301489.49720-0.446506.236705.21480HepG2DNAJC21
PTAR1ENSG00000188647.81170.407801476.37210-0.335005.210804.36140HepG2DNAJC2
PTAR1ENSG00000188647.81593.437801155.465600.463603.028801.86360HepG2AGO1
PTAR1ENSG00000188647.82487.542801847.016100.429403.673602.99620HepG2EIF2S1
PTAR1ENSG00000188647.82665.794702041.267200.385002.800502.15760HepG2EIF4A3
PTAR1ENSG00000188647.82006.152703065.53010-0.6117015.7154014.47460HepG2ETF1
PTAR1ENSG00000188647.81247.002401881.46390-0.593406.381605.11240HepG2EWSR1
PTAR1ENSG00000188647.81281.78740867.233100.563606.607905.42230HepG2FUBP3
PTAR1ENSG00000188647.81509.357102059.25870-0.448203.862103.05380HepG2FXR1
PTAR1ENSG00000188647.81447.275201910.41930-0.400502.906802.22540HepG2G3BP1
PTAR1ENSG00000188647.81022.586901503.76730-0.556406.729405.78770HepG2HNRNPA1
PTAR1ENSG00000188647.82082.975703119.76900-0.582804.561402.61230HepG2HNRNPD
PTAR1ENSG00000188647.82316.396001883.042700.298702.540901.89300HepG2HNRNPL
PTAR1ENSG00000188647.8787.385101661.61290-1.0774036.6984034.71830HepG2HNRNPU
PTAR1ENSG00000188647.81505.078101941.95450-0.367702.843502.16050HepG2IGF2BP2
PTAR1ENSG00000188647.81400.881801697.28100-0.276904.299703.40540HepG2ILF2
PTAR1ENSG00000188647.81352.559201759.98790-0.379903.206002.10950HepG2KIF1C
PTAR1ENSG00000188647.81819.758902690.12860-0.563902.384401.61750HepG2LARP4
PTAR1ENSG00000188647.81181.804001592.42600-0.430203.103302.24870HepG2MSI2
PTAR1ENSG00000188647.81337.088801644.70080-0.298703.630802.67440HepG2PARN
PTAR1ENSG00000188647.82215.613801739.162100.349205.611004.88730HepG2PTBP1
PTAR1ENSG00000188647.81606.761302076.64770-0.370103.675003.01220HepG2PUM1
PTAR1ENSG00000188647.81318.560502075.23130-0.654306.268705.27350HepG2PUM2
PTAR1ENSG00000188647.82606.145201883.451500.468407.550306.59510HepG2QKI
PTAR1ENSG00000188647.82970.604501687.341800.815905.920504.91600HepG2RAVER1
PTAR1ENSG00000188647.82117.231202562.22250-0.275203.440702.88090HepG2RBM22
PTAR1ENSG00000188647.82706.506701709.392600.6628011.7104010.38290HepG2RBM25
PTAR1ENSG00000188647.82224.681601935.479900.200802.108001.62280HepG2NELFE
PTAR1ENSG00000188647.82586.858201802.710000.5209011.9223010.77660HepG2RECQL
PTAR1ENSG00000188647.8728.137501192.19770-0.711302.888402.26270HepG2RPS19
PTAR1ENSG00000188647.82019.281803617.13050-0.841009.052207.63580HepG2RPS3A
PTAR1ENSG00000188647.82605.805701834.847200.506002.981401.39750HepG2RTF1
PTAR1ENSG00000188647.81029.854901479.73430-0.5229010.214009.09750HepG2SAFB2
PTAR1ENSG00000188647.81161.931201725.61110-0.5706014.7613013.46080HepG2SMN1
PTAR1ENSG00000188647.82470.652101889.915000.386507.217806.53770HepG2SRSF1
PTAR1ENSG00000188647.82362.343501554.467700.603705.273703.85080HepG2SRSF3
PTAR1ENSG00000188647.82232.278901537.577300.5378013.0040011.96450HepG2SRSF9
PTAR1ENSG00000188647.8947.194101314.25880-0.472502.853401.59940HepG2STAU1
PTAR1ENSG00000188647.82289.189603146.68870-0.459003.223702.02960HepG2STIP1
PTAR1ENSG00000188647.82456.813101576.761800.639704.609803.04510HepG2SUB1
PTAR1ENSG00000188647.81711.234702196.77970-0.360403.456502.77630HepG2SUCLG1
PTAR1ENSG00000188647.84277.649201698.828501.3322063.8381061.58560HepG2TAF15
PTAR1ENSG00000188647.82253.311801560.886700.529605.803604.60450HepG2TIA1
PTAR1ENSG00000188647.8813.819501614.53290-0.9883023.0579021.87710HepG2TIAL1
PTAR1ENSG00000188647.81186.287401629.00270-0.457507.817906.94800HepG2TRIM56
PTAR1ENSG00000188647.81245.458501733.48170-0.477009.139307.99640HepG2UPF1
PTAR1ENSG00000188647.8726.589101155.81230-0.669703.896202.69330HepG2UPF2
PTAR1ENSG00000188647.81299.921701781.81970-0.454905.771004.30780HepG2UTP18
PTAR1ENSG00000188647.81927.501201673.617300.203702.092001.55690HepG2UTP3
PTAR1ENSG00000188647.82180.435303239.90240-0.571304.328202.95240HepG2XPO5
PTAR1ENSG00000188647.82308.146601658.615500.476702.925601.62820HepG2XRCC5
PTAR1ENSG00000188647.8693.140601242.37150-0.841909.502608.17700HepG2XRN2
PTAR1ENSG00000188647.81237.267401906.50620-0.6238018.1997017.10160HepG2ZNF622
PTAR1ENSG00000188647.82448.675501685.147800.539003.949002.37240HepG2ZRANB2
PTAR1ENSG00000188647.83103.178402509.265600.306402.511601.35410K562ABCF1
PTAR1ENSG00000188647.82807.294303450.51470-0.297602.774902.20630K562AGGF1
PTAR1ENSG00000188647.82810.343203590.45550-0.353403.389002.66420K562AKAP8L
PTAR1ENSG00000188647.82329.109503385.55920-0.539607.885005.70100K562APOBEC3C
PTAR1ENSG00000188647.82730.485604123.42910-0.5947011.162008.80700K562CCDC124
PTAR1ENSG00000188647.82500.087103117.11340-0.318204.184102.80060K562CPEB4
PTAR1ENSG00000188647.85725.866404718.399600.279103.027202.00830K562CELF1
PTAR1ENSG00000188647.81738.792902324.75890-0.419003.718702.48980K562DDX3X
PTAR1ENSG00000188647.82463.790903224.92320-0.388406.093805.17960K562DDX47
PTAR1ENSG00000188647.81351.064001776.12000-0.394605.372304.41810K562EIF2S2
PTAR1ENSG00000188647.81185.880601819.79410-0.6178011.448009.80730K562EIF3G
PTAR1ENSG00000188647.81878.514602428.78930-0.370603.656502.71630K562EIF4A3
PTAR1ENSG00000188647.81631.378002120.07920-0.378004.779002.99820K562EWSR1
PTAR1ENSG00000188647.81303.808001803.78810-0.468304.906103.75370K562FIP1L1
PTAR1ENSG00000188647.81842.528001344.499400.454503.879502.51740K562FKBP4
PTAR1ENSG00000188647.82324.814301858.054800.323202.629101.79630K562FMR1
PTAR1ENSG00000188647.82106.155601608.809900.388504.592502.81740K562FUS
PTAR1ENSG00000188647.81393.305202525.83690-0.8583025.4857023.76240K562FXR1
PTAR1ENSG00000188647.84486.931602746.866600.707804.039903.14570K562G3BP2
PTAR1ENSG00000188647.82405.203301943.692800.307303.755602.43490K562GLRX3
PTAR1ENSG00000188647.81573.591802367.01820-0.589008.522207.18000K562GRSF1
PTAR1ENSG00000188647.83945.048202613.226400.594102.463301.33240K562HNRNPA2B1
PTAR1ENSG00000188647.81914.535601548.536700.306002.736902.14320K562HNRNPC
PTAR1ENSG00000188647.81033.600801483.66450-0.521504.374803.18660K562HNRNPM
PTAR1ENSG00000188647.81229.695502250.77640-0.8721022.2949019.90870K562HNRNPU
PTAR1ENSG00000188647.81687.693702445.52160-0.535106.461805.26010K562HSPD1
PTAR1ENSG00000188647.82070.983901488.727500.476103.347302.31040K562KRR1
PTAR1ENSG00000188647.82097.892602646.02310-0.334903.399402.46200K562MAGOH
PTAR1ENSG00000188647.83018.516503647.44260-0.273002.525201.51260K562MAK16
PTAR1ENSG00000188647.82051.121802640.78260-0.364604.030002.90040K562MATR3
PTAR1ENSG00000188647.81011.140001452.02350-0.522102.756701.46750K562NONO
PTAR1ENSG00000188647.82581.414902270.489300.185102.840402.08500K562NSUN2
PTAR1ENSG00000188647.81191.114501511.87200-0.344002.885001.42630K562PHF6
PTAR1ENSG00000188647.81380.498002047.68950-0.568806.715205.33890K562PPIG
PTAR1ENSG00000188647.81006.533701434.44590-0.511104.672503.69930K562PRPF8
PTAR1ENSG00000188647.82029.285702570.71450-0.341203.708702.95080K562PTBP1
PTAR1ENSG00000188647.83272.567004186.31720-0.355303.908702.94370K562PUF60
PTAR1ENSG00000188647.81729.429502465.46610-0.511606.130604.81620K562RBM22
PTAR1ENSG00000188647.81855.634902403.00860-0.372903.096301.59950K562RBM34
PTAR1ENSG00000188647.8962.082701266.79830-0.397003.744902.59080K562RCC2
PTAR1ENSG00000188647.8965.021701461.27090-0.598604.979803.88280K562RPS19
PTAR1ENSG00000188647.81347.639402451.77610-0.863405.667404.16840K562RPS3
PTAR1ENSG00000188647.82373.473202857.97080-0.268002.081201.34150K562SF3B4
PTAR1ENSG00000188647.8927.249301200.88750-0.373102.970501.89790K562SRFBP1
PTAR1ENSG00000188647.81732.712202367.38010-0.450302.258201.32590K562SRSF4
PTAR1ENSG00000188647.82448.326401824.574500.424104.289602.81250K562SRSF7
PTAR1ENSG00000188647.83097.307402366.650600.388103.732402.13270K562SSRP1
PTAR1ENSG00000188647.83317.242202164.586300.615807.408805.30290K562STAU1
PTAR1ENSG00000188647.81058.312301445.66380-0.450005.284304.14120K562SYNCRIP
PTAR1ENSG00000188647.84074.898702696.517800.595603.196901.58890K562TAF15
PTAR1ENSG00000188647.81995.609902550.67110-0.354003.010402.27220K562TARDBP
PTAR1ENSG00000188647.82016.963702460.35710-0.286702.057201.35910K562TIA1
PTAR1ENSG00000188647.83098.195002059.972000.588709.838708.15100K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.





10 RBPs can affect the splicing of PTAR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPTAR1ENSG00000188647.8chr9-723567077235677472349065723491707236569672365866-0.127000.001500.02925excludedK562SF3B4
SEPTAR1ENSG00000188647.8chr9-723382417233854672324437723336007234705472347268-0.232000.006240.08999excludedHepG2U2AF1
SEPTAR1ENSG00000188647.8chr9-723382417233854672324437723336007234705472347268-0.290000.000870.09775excludedHepG2HNRNPM
SEPTAR1ENSG00000188647.8chr9-723382417233854672324437723336007234705472347268-0.210000.000230.00398excludedHepG2U2AF2
SEPTAR1ENSG00000188647.8chr9-723556017235569272349065723491707235670772356774-0.086000.001830.02797excludedK562PUS1
SEPTAR1ENSG00000188647.8chr9-7235563672355692723490657234917072356707723567740.232000.000070.05777includedK562SSB
SEPTAR1ENSG00000188647.8chr9-723382417233854672324437723336007234705472347268-0.151000.001480.03083excludedK562U2AF1
SEPTAR1ENSG00000188647.8chr9-723656967236586672356707723567747237476872374858-0.343000.000070.00464excludedK562HNRNPU
SEPTAR1ENSG00000188647.8chr9-723656967236586672349065723491707237476872374858-0.224000.000010.00089excludedK562AGGF1
SEPTAR1ENSG00000188647.8chr9-7235563672355692723490657234917072356707723567740.165000.003090.09295includedK562PTBP1
MXEPTAR1ENSG00000188647.8chr9-72338241723385467234705472347268723244377233360072349065723491700.160000.001540.028231includedK562PUS1
MXEPTAR1ENSG00000188647.8chr9-7233356572333600723382417233854672333053723334847234705472347268-0.320000.000230.002422includedHepG2U2AF2
MXEPTAR1ENSG00000188647.8chr9-72338241723385467234705472347268723244377233360072349065723491700.171000.001190.046571includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTAR1 is not avaliable on ENCORE database.