RBM41

General Information

Gene Name       : RBM41
Gene ID             : ENSG00000089682.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBM41)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBM41ENSG00000089682.1613.7010.0611.88ENCSR000AEF
HepG2RBM41ENSG00000089682.167.0812.259.66ENCSR985KAT
K562RBM41ENSG00000089682.1618.2723.4920.88ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: RBM41ENCSR637HFYRBM41cell-free sampleReleasedENCSR292HKC  






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
RBM41RBM41ReleasedENCODE3


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBM41 is not avaliable on ENCORE database.


  • The binding motifs of RBM41

    • Trulli

Proteins bound to RNA
  • RBM41 RNA is bound by 18 proteins.  







eCLIP assay for RBM41 is not avaliable on ENCORE database.





18 proteins are bound to RBM41 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX106310391106310466-3'-UTR,intron-Distal4.665505.31233HepG2HLTF
chrX106307823106307883-3'-UTR,intron-Distal3.168043.67498K562SAFB2
chrX106310091106310151-3'-UTR,intron-Distal4.366235.16344K562SAFB2
chrX106310410106310458-3'-UTR,intron-Distal3.620443.03056K562PPIL4
chrX106312605106312635-3'-UTR,CDS,intron-Distal,intron-Proximal3.548043.66187K562ZNF622
chrX106309847106309931-3'-UTR,intron-Distal,intron-Proximal3.585835.10467K562SAFB2
chrX106312415106312530-3'-UTR,CDS,intron-Distal,intron-Proximal4.425816.81564HepG2PRPF8
chrX106309733106309793-3'-UTR,intron-Distal,intron-Proximal3.938323.01412K562SAFB2
chrX106308957106309004-3'-UTR,CDS,intron-Distal3.136053.07152HepG2HLTF
chrX106310776106310805-3'-UTR,CDS,intron-Distal,intron-Proximal4.205794.10264K562ZNF622
chrX106312485106312534-3'-UTR,CDS,intron-Distal,intron-Proximal3.693014.49347K562UCHL5
chrX106312492106312630-3'-UTR,CDS,intron-Distal,intron-Proximal3.438447.42278HepG2BCLAF1
chrX106307687106307821-3'-UTR,intron-Distal3.5365210.45917K562SAFB2
chrX106309884106309928-3'-UTR,intron-Distal3.986273.26547HepG2HLTF
chrX106359188106359253-CDS,intron-Distal3.742787.50303K562UCHL5
chrX106359212106359285-CDS,intron-Distal,intron-Proximal3.212129.91204K562ZNF622
chrX106359205106359281-CDS,intron-Distal3.737327.89918K562DDX24
chrX106359199106359286-CDS,intron-Distal,intron-Proximal3.640154.24070HepG2GRWD1
chrX106359924106359997-CDS,intron-Distal,intron-Proximal4.0241812.57116K562ZNF622
chrX106359879106359995-CDS,intron-Distal,intron-Proximal3.3806717.09618K562UCHL5
chrX106331835106331886-CDS,intron-Distal,intron-Proximal3.919193.30172K562DDX24
chrX106331830106331899-CDS,intron-Distal,intron-Proximal5.052066.59793K562UCHL5
chrX106331905106331978-CDS,intron-Distal,intron-Proximal4.100834.06501K562GRWD1
chrX106356626106356700-CDS,intron-Distal,intron-Proximal4.314886.81238K562ZNF622
chrX106359876106359924-CDS,intron-Distal,intron-Proximal3.7596711.29508K562ZNF622
chrX106358673106358734-CDS,intron-Distal,intron-Proximal4.996786.37937HepG2BCLAF1
chrX106359199106359287-CDS,intron-Distal,intron-Proximal4.5563314.18756HepG2BCLAF1
chrX106358690106358744-CDS,intron-Distal,intron-Proximal4.258464.69071HepG2GRWD1
chrX106358666106358787-CDS,intron-Distal,intron-Proximal3.467099.24221K562DDX24
chrX106359253106359285-CDS,intron-Distal,intron-Proximal3.103355.17653K562UCHL5
chrX106359912106359982-CDS,intron-Distal3.038536.59838K562SRSF1
chrX106359091106359112-CDS,intron-Distal,intron-Proximal3.469143.87469HepG2BCLAF1
chrX106358689106358743-CDS,intron-Distal,intron-Proximal4.120227.39306HepG2PPIG
chrX106331920106332044-CDS,intron-Distal,intron-Proximal5.9840213.95734HepG2BCLAF1
chrX106359875106359946-CDS,intron-Distal,intron-Proximal4.471028.41475HepG2BCLAF1
chrX106358581106358627-CDS,intron-Distal,intron-Proximal3.116794.34780K562ZNF622
chrX106359912106359998-CDS,intron-Distal,intron-Proximal3.412983.60157HepG2GRWD1
chrX106353707106353800-intron-Distal4.781256.51328K562KHSRP
chrX106322516106322591-intron-Distal3.149753.75707K562SAFB2
chrX106344752106344817-intron-Distal3.914773.16028HepG2SUGP2
chrX106360534106360704-intron-Distal4.637624.49973K562MATR3
chrX106360405106360471-intron-Distal5.3623813.64011K562PTBP1
chrX106315780106315832-intron-Distal4.868256.41304K562EXOSC5
chrX106361835106361932-intron-Distal3.790476.42586K562TIA1
chrX106350929106351011-intron-Distal5.224576.57566K562PTBP1
chrX106315344106315408-intron-Distal5.5248311.00067K562EXOSC5
chrX106325284106325368-intron-Distal3.906263.01412K562SAFB2
chrX106323756106323821-intron-Distal3.774747.00245K562SAFB2
chrX106360338106360405-intron-Distal3.848457.23818K562PTBP1
chrX106320748106320824-intron-Distal4.566206.48464K562TARDBP
chrX106315559106315603-intron-Distal4.749735.12361K562EXOSC5
chrX106359334106359387-intron-Distal,intron-Proximal3.736504.93376K562PRPF8
chrX106350984106351035-intron-Distal3.572923.83822HepG2PTBP1
chrX106315189106315241-intron-Distal4.5277610.61709K562EXOSC5
chrX106360547106360605-intron-Distal3.901055.78896K562PTBP1
chrX106315895106315936-intron-Distal5.030677.06134K562EXOSC5
chrX106326999106327043-intron-Distal3.580223.01412K562SAFB2
chrX106327803106327866-intron-Distal3.290954.70071K562SAFB2
chrX106316113106316150-intron-Distal4.807476.08953K562EXOSC5
chrX106325811106325833-intron-Distal3.683093.22483K562SAFB2
chrX106314632106314682-intron-Distal4.894496.41304K562EXOSC5
chrX106350901106351034-intron-Distal3.709555.72424K562MATR3
chrX106342819106342938-intron-Distal4.193454.13641K562TARDBP
chrX106318165106318239-intron-Distal4.719036.08869K562EXOSC5
chrX106314816106314937-intron-Distal4.044974.07352K562KHSRP
chrX106318889106318943-intron-Distal4.164773.59909K562EXOSC5
chrX106315936106315963-intron-Distal4.428794.80399K562EXOSC5
chrX106316233106316269-intron-Distal3.903796.11008K562EXOSC5
chrX106360605106360673-intron-Distal4.3274010.46906K562PTBP1
chrX106316163106316218-intron-Distal4.529228.80887K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBM41 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBM41 is not available on ENCORE database.

  • 97 RBPs can affect the levels of RBM41.  








The Knockdown/knockout RNA-Seq assay for RBM41 is not available on ENCORE database.





97 RBPs can affect the gene expression of RBM41 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBM41ENSG00000089682.12307.25410390.26940-0.345002.110701.56540HepG2ACO1
RBM41ENSG00000089682.12374.56860584.69460-0.642505.251704.45920HepG2BOP1
RBM41ENSG00000089682.12375.93390276.837500.441302.082601.40550HepG2CIRBP
RBM41ENSG00000089682.12302.57960390.22500-0.367002.365801.74290HepG2CKAP4
RBM41ENSG00000089682.12374.97610536.77710-0.517503.431302.67360HepG2CPSF6
RBM41ENSG00000089682.12259.97660344.17760-0.404802.209301.30190HepG2YBX3
RBM41ENSG00000089682.12312.32650442.82890-0.503704.642703.72020HepG2DAZAP1
RBM41ENSG00000089682.12224.49560337.96250-0.590204.062203.22290HepG2DNAJC21
RBM41ENSG00000089682.12260.21910334.96960-0.364302.187301.59470HepG2DNAJC2
RBM41ENSG00000089682.12418.84310307.907000.443802.107301.54680HepG2EIF4A3
RBM41ENSG00000089682.12277.11880381.39880-0.460802.641601.82560HepG2EWSR1
RBM41ENSG00000089682.12330.39970198.543200.734705.015403.96970HepG2FUBP3
RBM41ENSG00000089682.12378.40890608.46650-0.685204.954704.11300HepG2GPKOW
RBM41ENSG00000089682.12283.57780372.62010-0.394002.522401.58590HepG2HDGF
RBM41ENSG00000089682.12237.50810341.20020-0.522602.767202.12020HepG2HNRNPA1
RBM41ENSG00000089682.12242.23810379.51930-0.647703.969003.14930HepG2HNRNPC
RBM41ENSG00000089682.12319.01740403.41100-0.338602.228601.61410HepG2HNRNPL
RBM41ENSG00000089682.12273.70440377.01040-0.462003.140002.49720HepG2HNRNPU
RBM41ENSG00000089682.12427.04830294.597300.535602.561301.60280HepG2KHSRP
RBM41ENSG00000089682.12486.89970707.20750-0.538502.762101.93180HepG2LARP4
RBM41ENSG00000089682.12456.21310310.691900.554103.214002.50760HepG2MAGOH
RBM41ENSG00000089682.12295.51230439.10340-0.571304.753403.75450HepG2NOL12
RBM41ENSG00000089682.12683.78950514.885500.409202.366201.67240HepG2NSUN2
RBM41ENSG00000089682.12278.23070419.13730-0.591103.412102.75950HepG2PUF60
RBM41ENSG00000089682.12450.45760311.016400.534303.781703.06770HepG2QKI
RBM41ENSG00000089682.12473.74290282.270900.746906.499305.50550HepG2RBM25
RBM41ENSG00000089682.12411.32640319.602900.363902.064001.58210HepG2NELFE
RBM41ENSG00000089682.12457.03060297.673300.618505.321904.50160HepG2RECQL
RBM41ENSG00000089682.12598.99130472.778700.341301.985801.39600HepG2RPLP0
RBM41ENSG00000089682.12347.90360568.37620-0.708203.469502.71180HepG2SF3A3
RBM41ENSG00000089682.12399.88620574.74340-0.523303.561702.76980HepG2SF3B1
RBM41ENSG00000089682.12480.27670312.080100.621805.472304.86430HepG2SRSF1
RBM41ENSG00000089682.12330.17370431.22320-0.385202.409201.75710HepG2SRSF7
RBM41ENSG00000089682.12344.47180253.896500.440002.878602.31820HepG2SRSF9
RBM41ENSG00000089682.12399.45320280.518600.509803.418602.80590HepG2TAF15
RBM41ENSG00000089682.12389.63210566.00750-0.538703.735602.90950HepG2TARDBP
RBM41ENSG00000089682.12369.39530257.749000.519103.323502.41160HepG2TIA1
RBM41ENSG00000089682.12246.68940369.61010-0.583304.650703.95780HepG2TRIM56
RBM41ENSG00000089682.12620.93380434.524200.514903.259902.58270HepG2U2AF1
RBM41ENSG00000089682.12389.22170504.06320-0.373002.830202.12430HepG2UPF1
RBM41ENSG00000089682.12325.42660486.65260-0.580605.262004.48090HepG2UTP3
RBM41ENSG00000089682.12447.82670344.929200.376502.640201.98250HepG2ZC3H8
RBM41ENSG00000089682.12346.19770554.37250-0.679308.671007.84160HepG2ZNF622
RBM41ENSG00000089682.121241.818502433.19050-0.9704023.2704021.73680K562AGGF1
RBM41ENSG00000089682.121699.373202673.47000-0.6537010.412508.17870K562AKAP8
RBM41ENSG00000089682.121378.806902531.78630-0.8767015.8444014.05590K562AKAP8L
RBM41ENSG00000089682.12616.593401602.45890-1.3779028.7635027.07540K562AQR
RBM41ENSG00000089682.121844.696302656.34250-0.5261010.174608.29030K562ATP5C1
RBM41ENSG00000089682.12779.676101297.06370-0.734308.702007.10960K562BOP1
RBM41ENSG00000089682.12930.285101226.43530-0.398702.763201.35150K562BUD13
RBM41ENSG00000089682.122378.218702907.98680-0.290103.362702.04720K562CCDC124
RBM41ENSG00000089682.121000.121701563.77860-0.644906.209503.95270K562CKAP4
RBM41ENSG00000089682.121303.622902382.14520-0.869706.875405.14930K562CNOT7
RBM41ENSG00000089682.12937.708801379.14370-0.556606.972505.71900K562CPSF6
RBM41ENSG00000089682.12482.64200717.67660-0.572402.545601.54790K562DDX3X
RBM41ENSG00000089682.121330.044801806.71460-0.441907.218906.23450K562DDX47
RBM41ENSG00000089682.12566.28180727.61690-0.361703.037501.65130K562DDX6
RBM41ENSG00000089682.121824.774302724.75140-0.578406.639005.19230K562DKC1
RBM41ENSG00000089682.12330.65510612.16580-0.888606.348404.91920K562EFTUD2
RBM41ENSG00000089682.12844.323701109.87770-0.394503.373402.59140K562EIF2S2
RBM41ENSG00000089682.12501.70810749.77520-0.579605.425904.27800K562EIF4A3
RBM41ENSG00000089682.12665.19440849.09520-0.352202.760301.49640K562EXOSC5
RBM41ENSG00000089682.121174.79990843.694000.477504.268302.24120K562FASTKD2
RBM41ENSG00000089682.12937.034901403.26000-0.582606.324305.01350K562FMR1
RBM41ENSG00000089682.12851.615901189.39550-0.482003.997202.88420K562FTO
RBM41ENSG00000089682.12957.85970697.149900.458203.912202.28550K562FUS
RBM41ENSG00000089682.12602.05340779.73120-0.373103.356602.69910K562FXR1
RBM41ENSG00000089682.121234.70220865.063700.513203.452502.64580K562G3BP2
RBM41ENSG00000089682.12626.028301316.73700-1.0727019.6992017.46510K562GPKOW
RBM41ENSG00000089682.12749.642901479.11340-0.9805017.7420015.76690K562GRSF1
RBM41ENSG00000089682.12457.32060722.29240-0.659403.499602.83880K562HNRNPC
RBM41ENSG00000089682.12987.454501632.81780-0.7256011.494709.19660K562HNRNPL
RBM41ENSG00000089682.12551.257901041.02660-0.917209.111607.24170K562HNRNPM
RBM41ENSG00000089682.12636.28960816.67630-0.360102.075601.30270K562HNRNPU
RBM41ENSG00000089682.121254.323401715.99940-0.452104.345403.35490K562HSPD1
RBM41ENSG00000089682.121729.649502687.06380-0.635609.663807.86650K562KIF1C
RBM41ENSG00000089682.12696.682801124.34440-0.690505.284103.93990K562KRR1
RBM41ENSG00000089682.12699.205501012.35620-0.533905.526004.32430K562MAGOH
RBM41ENSG00000089682.121764.926502572.01440-0.543306.611504.65530K562MAK16
RBM41ENSG00000089682.12715.364701010.33320-0.498105.271603.94250K562MATR3
RBM41ENSG00000089682.121713.493703010.16140-0.8129018.1605015.60300K562MBNL1
RBM41ENSG00000089682.12795.107501285.28470-0.692909.402907.72200K562METAP2
RBM41ENSG00000089682.121771.986302223.75060-0.327602.570401.48460K562MSI2
RBM41ENSG00000089682.121150.600602109.88710-0.874809.758707.71420K562NAA15
RBM41ENSG00000089682.12369.37610602.81220-0.706602.729701.44990K562NONO
RBM41ENSG00000089682.121002.247201274.68930-0.346905.134804.16280K562NSUN2
RBM41ENSG00000089682.121236.548802288.54170-0.888107.291805.31030K562PABPC1
RBM41ENSG00000089682.121143.141502036.24230-0.832904.494003.14850K562PABPN1
RBM41ENSG00000089682.12659.18470900.78330-0.450503.592502.48120K562PCBP2
RBM41ENSG00000089682.12360.63590579.92630-0.685304.079601.82760K562PES1
RBM41ENSG00000089682.12658.23250828.43990-0.331802.596201.82400K562POLR2G
RBM41ENSG00000089682.12830.514401436.77830-0.7908010.904608.96570K562PPIG
RBM41ENSG00000089682.12256.65640595.70400-1.214809.427108.03960K562PRPF8
RBM41ENSG00000089682.12729.91530983.55230-0.430304.097203.30510K562PTBP1
RBM41ENSG00000089682.121388.199302276.27370-0.7135011.090209.44430K562PUF60
RBM41ENSG00000089682.121833.053602372.26980-0.372003.065102.05650K562PUM2
RBM41ENSG00000089682.121176.450902511.25720-1.0940022.8095021.26700K562PUS1
RBM41ENSG00000089682.121182.355802446.49390-1.0491018.1779016.62690K562RBM15
RBM41ENSG00000089682.12615.35190943.22000-0.616206.453505.09830K562RBM22
RBM41ENSG00000089682.12280.57490606.90140-1.113108.306306.87830K562RPS19
RBM41ENSG00000089682.12543.64900738.13650-0.441203.325302.13630K562SAFB
RBM41ENSG00000089682.12909.132901862.75850-1.034905.130403.32910K562SF1
RBM41ENSG00000089682.12950.131501257.77200-0.404705.000903.93150K562SF3A3
RBM41ENSG00000089682.12709.80230900.02710-0.342602.523401.70910K562SF3B4
RBM41ENSG00000089682.121245.655402271.73180-0.866904.315502.54290K562SFPQ
RBM41ENSG00000089682.121025.31780724.184700.501503.053501.37510K562SND1
RBM41ENSG00000089682.121273.787702138.38870-0.747403.249501.87640K562SNRNP200
RBM41ENSG00000089682.12420.71600964.18640-1.1965022.0000020.01290K562SRSF1
RBM41ENSG00000089682.12400.38490576.96660-0.527102.223401.31860K562SUPV3L1
RBM41ENSG00000089682.12674.78810975.86860-0.532303.686902.86610K562TARDBP
RBM41ENSG00000089682.121122.471201351.57890-0.268002.808202.08490K562UPF1
RBM41ENSG00000089682.121434.886202545.72840-0.827105.562503.54040K562UTP18
RBM41ENSG00000089682.121466.189801805.06520-0.300002.363001.57500K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBM41 is not available on ENCORE database.





16 RBPs can affect the splicing of RBM41 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBM41ENSG00000089682.12chrX-106359380106359474106359091106359284106359879106359998-0.252000.000140.00403excludedK562SRSF1
SERBM41ENSG00000089682.12chrX-106356626106356698106331856106332069106358581106358786-0.208000.002640.04565excludedK562SRSF1
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.223000.000010.00039excludedK562SF3B4
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.396000.000790.05089excludedHepG2RBM22
SERBM41ENSG00000089682.12chrX-106331964106332069106312484106312632106356626106356698-0.314000.000120.02415excludedK562MATR3
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.357000.000000.00000excludedHepG2U2AF1
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.350000.000010.00259excludedHepG2HNRNPM
SERBM41ENSG00000089682.12chrX-106356626106356698106312539106312632106358581106358786-0.178000.000270.00402excludedK562AQR
SERBM41ENSG00000089682.12chrX-106359380106359474106359091106359284106359879106359998-0.204000.003090.09063excludedK562FXR1
SERBM41ENSG00000089682.12chrX-106356626106356698106331856106332069106358581106358786-0.248000.000050.00359excludedK562FXR1
SERBM41ENSG00000089682.12chrX-106356626106356698106331856106332069106358581106358786-0.108000.000630.01160excludedK562PUS1
SERBM41ENSG00000089682.12chrX-1063319641063320691063124841063126321063566261063566980.217000.000230.04806includedK562MTPAP
SERBM41ENSG00000089682.12chrX-1063566261063566981063318561063320691063585811063587860.159000.000100.07210includedK562SSB
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.286000.000000.00000excludedK562U2AF1
SERBM41ENSG00000089682.12chrX-1063566261063566981063319641063320691063585811063587860.358000.000020.00276includedHepG2HNRNPL
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.314000.004970.08788excludedHepG2SRSF1
SERBM41ENSG00000089682.12chrX-106356626106356698106331964106332069106358581106358786-0.381000.000000.00000excludedK562U2AF2
SERBM41ENSG00000089682.12chrX-1063134421063136551063124841063126321063319641063320690.635000.002880.09884includedK562HNRNPK
SERBM41ENSG00000089682.12chrX-106359380106359474106359091106359284106359879106359998-0.263000.000010.00067excludedK562HNRNPK
A3SSRBM41ENSG00000089682.12chrX-1063319641063321921063319641063320691063566261063566980.056000.000220.00178longerK562AQR
A5SSRBM41ENSG00000089682.12chrX-1063316651063320691063319641063320691063124841063126320.274000.000280.05471longerK562HNRNPUL1
RIRBM41ENSG00000089682.12chrX-1063316651063320691063316651063318031063319641063320690.096000.002070.08393includedK562NPM1
RIRBM41ENSG00000089682.12chrX-1063124841063136551063124841063126321063134421063136550.413000.012430.06520includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBM41 is not avaliable on ENCORE database.