TPT1-AS1

General Information

Gene Name       : TPT1-AS1
Gene ID             : ENSG00000170919.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TPT1-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TPT1-AS1ENSG00000170919.157.917.077.49ENCSR000AEF
HepG2TPT1-AS1ENSG00000170919.1512.4218.3715.39ENCSR985KAT
K562TPT1-AS1ENSG00000170919.152.823.303.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TPT1-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TPT1-AS1 RNA is bound by 18 proteins.  







eCLIP assay for TPT1-AS1 is not avaliable on ENCORE database.





18 proteins are bound to TPT1-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134594346445943590+intron-Distal3.000403.25222HepG2PTBP1
chr134593452345934603+intron-Distal4.339947.31085HepG2PCBP2
chr134592349945923579+intron-Distal6.7552323.05438K562PTBP1
chr134593802045938110+intron-Distal3.877289.19663HepG2PTBP1
chr134593280845932882+intron-Distal3.7452612.96718K562HNRNPL
chr134593283145932877+intron-Distal5.9233227.41197HepG2HNRNPL
chr134593902245939064+intron-Distal3.354984.36650HepG2SUGP2
chr134593277045932808+intron-Distal3.413527.32408K562HNRNPL
chr134594690345946985+intron-Distal3.2709011.59276HepG2DDX59
chr134593662945936682+intron-Distal4.188583.41738HepG2PTBP1
chr134593239445932476+intron-Distal3.940313.71997HepG2ILF3
chr134593631345936332+intron-Distal3.211295.10681HepG2SUGP2
chr134593714545937215+intron-Distal4.3346619.34126HepG2SUGP2
chr134595146345951549+intron-Distal5.173138.15818HepG2NKRF
chr134593908745939162+intron-Distal3.9188110.73957HepG2SUGP2
chr134593662445936677+intron-Distal4.369003.80778HepG2QKI
chr134594688545946973+intron-Distal3.6034812.99341HepG2HNRNPK
chr134595429645954398+intron-Distal4.556583.37054HepG2XPO5
chr134591574945915814+intron-Distal,intron-Proximal3.801575.56912HepG2AQR
chr134595135645951463+intron-Distal,intron-Proximal3.505265.75313HepG2NKRF
chr134593288645932981+intron-Distal4.5413112.24175K562HNRNPL
chr134593789845937984+intron-Distal4.824179.88335HepG2PTBP1
chr134593685145936926+intron-Distal3.4556911.59195HepG2SUGP2
chr134593721545937313+intron-Distal4.4867318.33532HepG2SUGP2
chr134594678845947004+intron-Distal4.5614432.07813HepG2PCBP2
chr134593780945937872+intron-Distal4.113233.33944K562MATR3
chr134593760245937669+intron-Distal3.263733.93724HepG2HNRNPK
chr134593274945932814+intron-Distal5.2294624.80593HepG2HNRNPL
chr134593780045937907+intron-Distal5.022678.01961HepG2MATR3
chr134593287845932935+intron-Distal4.4258913.14991HepG2HNRNPL
chr134594347145943574+intron-Distal3.513905.11028HepG2PCBP2
chr134591957945919721+intron-Distal4.345485.08856K562ILF3
chr134593281245932873+intron-Distal4.262328.12378HepG2AGGF1
chr134593281045932890+intron-Distal5.3453324.86253K562AGGF1
chr134592343245923484+intron-Distal4.967286.40067K562PTBP1
chr134593708645937191+intron-Distal3.238789.72356HepG2MATR3
chr134594723145947294+intron-Distal3.534384.51896HepG2XPO5
chr134593901845939231+intron-Distal3.8332517.94082HepG2MATR3
chr134593795445938003+intron-Distal5.122488.68064HepG2QKI
chr134593647345936530+intron-Distal3.240206.97819HepG2SUGP2
chr134594961145949651+intron-Distal4.107566.96499HepG2XPO5
chr134593274245932810+intron-Distal3.3048210.17121K562AGGF1
chr134592601145926071+intron-Distal,intron-Proximal3.823695.59048HepG2HNRNPC
chr134593281445932831+intron-Distal5.8312622.67156HepG2HNRNPL
chr134593721145937254+intron-Distal3.536027.89970HepG2MATR3
chr134592349445923578+intron-Distal7.9300959.73844HepG2PTBP1
chr134593677145936821+intron-Distal3.562394.19039HepG2PTBP1
chr134593676445936851+intron-Distal4.2528917.48531HepG2SUGP2
chr134596255345962632+intron-Distal3.701796.23097HepG2ILF3
chr134593820145938262+intron-Distal4.041017.91367HepG2MATR3
chr134593289045933011+intron-Distal4.3202413.24683K562AGGF1
chr134593275445932812+intron-Distal3.358374.15061HepG2AGGF1
chr134593675445936820+intron-Distal3.957966.01170HepG2MATR3
chr134595146845951550+intron-Distal3.023024.04108HepG2XPO5
chr134593782845937877+intron-Distal3.910984.48652HepG2PTBP1
chr134595146945951556+intron-Distal3.514855.38982HepG2PRPF4
chr134595266445952675+intron-Proximal4.084683.16051HepG2PPIG
chr134595278645952847+intron-Proximal4.439194.75655HepG2PRPF8
chr134595345145953512+intron-Proximal6.165448.72621HepG2PRPF8
chr134595131645951354+intron-Proximal4.655755.87377HepG2PPIG
chr134595122145951295+intron-Proximal4.138184.07830K562SRSF1
chr134595344945953518+intron-Proximal4.223463.85435K562PRPF8
chr134595122745951295+intron-Proximal4.178259.42796HepG2SRSF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TPT1-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TPT1-AS1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of TPT1-AS1.  








The Knockdown/knockout RNA-Seq assay for TPT1-AS1 is not available on ENCORE database.





94 RBPs can affect the gene expression of TPT1-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TPT1-AS1ENSG00000170919.11363.31170452.37270-0.316302.056501.51750HepG2ACO1
TPT1-AS1ENSG00000170919.11169.12150533.43720-1.6573018.5121017.26300HepG2AKAP1
TPT1-AS1ENSG00000170919.11306.04820454.48840-0.570505.050704.04040HepG2AKAP8L
TPT1-AS1ENSG00000170919.11425.70100241.919000.815206.478105.60700HepG2BOP1
TPT1-AS1ENSG00000170919.11604.90910427.764300.499802.617801.67190HepG2CCAR1
TPT1-AS1ENSG00000170919.11350.26270452.26270-0.368702.661702.00610HepG2CKAP4
TPT1-AS1ENSG00000170919.11375.72950577.66290-0.620502.874502.09430HepG2CNOT7
TPT1-AS1ENSG00000170919.11466.43780222.092001.070405.414104.48200HepG2CPSF6
TPT1-AS1ENSG00000170919.11489.33580341.741500.517803.615302.56230HepG2DDX24
TPT1-AS1ENSG00000170919.11329.10820510.97700-0.634704.163703.40930HepG2DDX3X
TPT1-AS1ENSG00000170919.11681.22470432.795100.654305.523204.62580HepG2DKC1
TPT1-AS1ENSG00000170919.11551.46740421.962400.386101.915301.41180HepG2EIF2S1
TPT1-AS1ENSG00000170919.111051.86720466.300601.1735015.4019013.91140HepG2EIF4A3
TPT1-AS1ENSG00000170919.11655.63600424.448700.627204.798703.40180HepG2ESF1
TPT1-AS1ENSG00000170919.11848.42710640.889800.404603.887803.19540HepG2ETF1
TPT1-AS1ENSG00000170919.11222.65490494.82720-1.1521010.403809.04380HepG2FIP1L1
TPT1-AS1ENSG00000170919.11449.09050312.539500.522903.286302.43420HepG2FUBP3
TPT1-AS1ENSG00000170919.11847.87420463.392800.871509.434807.78860HepG2G3BP2
TPT1-AS1ENSG00000170919.11430.65130251.750900.774405.085704.23450HepG2GPKOW
TPT1-AS1ENSG00000170919.11631.66730337.516300.904109.627808.53030HepG2HNRNPA1
TPT1-AS1ENSG00000170919.11556.12990350.772600.664804.350203.47360HepG2HNRNPF
TPT1-AS1ENSG00000170919.11653.64000442.018500.564304.185103.34150HepG2HNRNPK
TPT1-AS1ENSG00000170919.11389.75900569.65150-0.547505.878304.92700HepG2HNRNPL
TPT1-AS1ENSG00000170919.11510.91130240.251201.0884010.597009.46020HepG2HNRNPLL
TPT1-AS1ENSG00000170919.11603.81600345.406900.805708.678407.46500HepG2IGF2BP1
TPT1-AS1ENSG00000170919.11653.05360446.245000.549303.090702.02290HepG2KHSRP
TPT1-AS1ENSG00000170919.11239.53930358.90910-0.583403.423002.16230HepG2LARP7
TPT1-AS1ENSG00000170919.11686.88970470.695100.545203.693002.93560HepG2MAGOH
TPT1-AS1ENSG00000170919.11472.11590245.041800.946005.737004.31470HepG2MTPAP
TPT1-AS1ENSG00000170919.11501.51670620.09990-0.306202.016001.36270HepG2NOL12
TPT1-AS1ENSG00000170919.11465.12900213.034201.1264010.567009.18270HepG2NSUN2
TPT1-AS1ENSG00000170919.11665.89450431.414000.626104.701803.77190HepG2PABPC4
TPT1-AS1ENSG00000170919.11419.05640332.635700.333101.941201.31530HepG2PPIL4
TPT1-AS1ENSG00000170919.11352.87540628.36700-0.8324013.1835012.09290HepG2PUM1
TPT1-AS1ENSG00000170919.11697.29710429.942700.697508.077107.09530HepG2QKI
TPT1-AS1ENSG00000170919.11236.15760451.17060-0.933904.166203.30950HepG2RAVER1
TPT1-AS1ENSG00000170919.11440.09410535.65200-0.283501.810601.36830HepG2RBM22
TPT1-AS1ENSG00000170919.11615.20500441.853100.477404.298303.65050HepG2NELFE
TPT1-AS1ENSG00000170919.11699.45420411.580200.7650010.352409.27520HepG2RECQL
TPT1-AS1ENSG00000170919.11622.52580377.928700.719904.164403.35400HepG2RPLP0
TPT1-AS1ENSG00000170919.11666.91300442.985500.590103.159302.15370HepG2RPS10
TPT1-AS1ENSG00000170919.11293.83870407.43730-0.471602.498701.47880HepG2RPS5
TPT1-AS1ENSG00000170919.11131.43440216.61320-0.720802.929002.12290HepG2RRP9
TPT1-AS1ENSG00000170919.11277.20390621.70130-1.1653011.5484010.10760HepG2SF3A3
TPT1-AS1ENSG00000170919.11500.31230237.796801.0730011.106409.78030HepG2SF3B1
TPT1-AS1ENSG00000170919.11588.72120413.320000.510203.909403.22680HepG2SF3B4
TPT1-AS1ENSG00000170919.11259.39170387.30900-0.578404.782003.97430HepG2SMN1
TPT1-AS1ENSG00000170919.11402.35310584.45090-0.538605.268804.44700HepG2SRSF5
TPT1-AS1ENSG00000170919.11555.34850344.636500.688207.457906.40450HepG2SRSF7
TPT1-AS1ENSG00000170919.11633.57550351.024400.8518013.6230012.56340HepG2SRSF9
TPT1-AS1ENSG00000170919.111056.74750525.221101.008506.498005.77350HepG2SSB
TPT1-AS1ENSG00000170919.11429.01760664.68330-0.631608.047407.07950HepG2SUCLG1
TPT1-AS1ENSG00000170919.11437.91200282.593000.631803.353002.61690HepG2SUPV3L1
TPT1-AS1ENSG00000170919.11768.14420387.870600.9857016.6231015.41670HepG2TAF15
TPT1-AS1ENSG00000170919.11330.11530234.190900.495202.367401.68970HepG2TARDBP
TPT1-AS1ENSG00000170919.11493.28800356.322900.469103.527202.58750HepG2TIA1
TPT1-AS1ENSG00000170919.11180.58140423.23160-1.2288011.4499010.14610HepG2U2AF1
TPT1-AS1ENSG00000170919.1177.96770325.57160-2.062007.862506.11540HepG2U2AF2
TPT1-AS1ENSG00000170919.11452.52050258.760000.806304.604203.28990HepG2UPF2
TPT1-AS1ENSG00000170919.11323.77140496.06100-0.615502.322601.35330HepG2XRCC6
TPT1-AS1ENSG00000170919.11570.88400278.181901.037109.423808.10630HepG2XRN2
TPT1-AS1ENSG00000170919.11514.63940382.137800.429403.588302.83930HepG2ZC3H8
TPT1-AS1ENSG00000170919.11235.90590143.481900.717203.550802.14880K562ABCF1
TPT1-AS1ENSG00000170919.11112.18980162.28700-0.532601.897701.35270K562AKAP8L
TPT1-AS1ENSG00000170919.11295.71550152.065400.959406.381805.55190K562AQR
TPT1-AS1ENSG00000170919.11230.2303083.392701.465009.863808.16520K562BOP1
TPT1-AS1ENSG00000170919.11165.7595099.960300.729602.790901.36760K562BUD13
TPT1-AS1ENSG00000170919.11234.09230152.517900.618003.038801.45410K562CEBPZ
TPT1-AS1ENSG00000170919.11241.72250122.808200.976804.186902.83580K562CNOT7
TPT1-AS1ENSG00000170919.11208.7897088.650801.235707.937906.59510K562CPSF6
TPT1-AS1ENSG00000170919.11424.69520206.447501.040609.783207.99980K562CELF1
TPT1-AS1ENSG00000170919.11261.98720175.309200.579502.865901.63140K562DDX21
TPT1-AS1ENSG00000170919.11219.12690139.316100.653302.592101.95890K562DDX47
TPT1-AS1ENSG00000170919.11189.0230088.077001.101606.407905.16630K562EIF4A3
TPT1-AS1ENSG00000170919.11210.21150109.718800.937904.290302.20830K562ESF1
TPT1-AS1ENSG00000170919.11229.4141090.238001.346007.896506.40730K562FMR1
TPT1-AS1ENSG00000170919.11195.0256076.501301.350006.367104.92240K562FTO
TPT1-AS1ENSG00000170919.11164.1822091.993200.835604.098802.71900K562GLRX3
TPT1-AS1ENSG00000170919.11210.6628084.624101.315708.390307.00030K562GPKOW
TPT1-AS1ENSG00000170919.11201.2726089.351401.171506.729705.83830K562HNRNPC
TPT1-AS1ENSG00000170919.11207.98250139.851600.572502.378401.63770K562HSPD1
TPT1-AS1ENSG00000170919.11151.8430072.299401.070404.003402.86230K562KRR1
TPT1-AS1ENSG00000170919.11196.7440082.609201.251807.552406.07290K562METAP2
TPT1-AS1ENSG00000170919.11264.60270178.954800.564102.456801.39410K562MSI2
TPT1-AS1ENSG00000170919.11179.3883096.720500.891104.792703.75190K562MTPAP
TPT1-AS1ENSG00000170919.11264.99840107.456101.3021012.2077010.79350K562NSUN2
TPT1-AS1ENSG00000170919.11199.90720117.983300.760602.702101.48200K562PABPC1
TPT1-AS1ENSG00000170919.11253.75950151.645800.742703.623702.67130K562PCBP3
TPT1-AS1ENSG00000170919.11172.74920117.136300.560402.196701.46910K562PPIG
TPT1-AS1ENSG00000170919.1139.1271082.19780-1.070902.791402.03870K562PRPF8
TPT1-AS1ENSG00000170919.1164.94550111.26720-0.776702.748602.08650K562PTBP1
TPT1-AS1ENSG00000170919.11298.69160183.181800.705303.975003.00140K562PUF60
TPT1-AS1ENSG00000170919.11350.22810190.906700.875306.948205.41030K562PUM2
TPT1-AS1ENSG00000170919.11250.59560159.626400.650603.151201.43250K562RBM17
TPT1-AS1ENSG00000170919.11218.37890106.045201.042107.189405.92200K562SF3A3
TPT1-AS1ENSG00000170919.11173.2202080.537501.104804.283803.05440K562SF3B1
TPT1-AS1ENSG00000170919.11173.76740109.080100.671702.749702.04430K562SRSF1
TPT1-AS1ENSG00000170919.11236.20430156.462500.594103.087201.84590K562SRSF7
TPT1-AS1ENSG00000170919.11199.75930123.771600.690503.011701.70030K562STAU1
TPT1-AS1ENSG00000170919.11175.0401079.549401.137705.301303.85440K562SUPV3L1
TPT1-AS1ENSG00000170919.11128.8266077.055400.741402.231701.39880K562TIAL1
TPT1-AS1ENSG00000170919.11135.6878081.864700.728902.510801.61650K562TRIM56
TPT1-AS1ENSG00000170919.11192.33680120.602800.673302.845201.43760K562TRIP6
TPT1-AS1ENSG00000170919.11304.70670113.938701.4191015.4186013.88310K562UPF1
TPT1-AS1ENSG00000170919.11292.89450125.747901.219709.032006.98200K562UTP3
TPT1-AS1ENSG00000170919.11184.9792097.492600.923902.838001.94980K562WDR3
TPT1-AS1ENSG00000170919.11150.37200101.389000.568502.271601.49800K562WDR43
TPT1-AS1ENSG00000170919.11302.92660171.282700.822505.884704.55200K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TPT1-AS1 is not available on ENCORE database.





11 RBPs can affect the splicing of TPT1-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETPT1-AS1ENSG00000170919.11chr13+4593427545934374459184634591858145944093459443170.541000.000260.01093includedK562AKAP8L
SETPT1-AS1ENSG00000170919.11chr13+4596484845965037459638694596395545965166459658570.154000.001530.03791includedHepG2HNRNPK
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.199000.000290.02964excludedHepG2TBRG4
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745961719459639554596516645965610-0.462000.000100.00201excludedHepG2U2AF2
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.258000.000350.02647excludedHepG2NCBP2
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.425000.000000.00003excludedHepG2PCBP2
SETPT1-AS1ENSG00000170919.11chr13+4595789445957973459569594595737045963869459639550.272000.002210.04740includedHepG2SRSF1
SETPT1-AS1ENSG00000170919.11chr13+4596484845965037459638694596395545965166459658570.183000.001260.03063includedHepG2SRSF1
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.268000.000670.02240excludedHepG2SF3A3
SETPT1-AS1ENSG00000170919.11chr13+4593427545934374459184634591858145944093459443170.269000.000300.04194includedHepG2SSB
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.485000.000000.00000excludedHepG2PCBP1
SETPT1-AS1ENSG00000170919.11chr13+459648484596503745963869459639554596516645965857-0.382000.000000.00008excludedHepG2HNRNPC
SETPT1-AS1ENSG00000170919.11chr13+4595789445957973459569594595737045963869459639550.412000.007810.09733includedK562HNRNPC
RITPT1-AS1ENSG00000170919.11chr13+4595332945954136459533294595347045954060459541360.439000.000810.02125includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TPT1-AS1 is not avaliable on ENCORE database.