CCDC109B

General Information

Gene Name       : CCDC109B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC109B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC109B is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on CCDC109B RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CCDC109B is not avaliable on ENCORE database.






NO known proteins are bound to CCDC109B RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CCDC109B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC109B is not available on ENCORE database.

  • 22 RBPs can affect the levels of CCDC109B.  








The Knockdown/knockout RNA-Seq assay for CCDC109B is not available on ENCORE database.





22 RBPs can affect the gene expression of CCDC109B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC109BENSG00000005059.1153.2260013.293802.001304.006503.38360HepG2AKAP1
CCDC109BENSG00000005059.1138.4906016.136001.254102.111201.44280HepG2NOL12
CCDC109BENSG00000005059.1157.370809.346202.617806.027005.01340HepG2RAVER1
CCDC109BENSG00000005059.114.3298029.66630-2.776504.491503.86990HepG2SSB
CCDC109BENSG00000005059.1175.42480136.31050-0.853803.131101.81950K562ABCF1
CCDC109BENSG00000005059.11246.86680182.528900.435501.841801.35970K562AGGF1
CCDC109BENSG00000005059.11129.76460200.79870-0.629902.301701.75930K562AQR
CCDC109BENSG00000005059.1131.9630083.47120-1.384904.163703.08660K562BOP1
CCDC109BENSG00000005059.1151.0420088.75560-0.798202.124801.42910K562CPSF6
CCDC109BENSG00000005059.11159.63130106.039200.590002.304601.63900K562EIF2S2
CCDC109BENSG00000005059.1137.3032076.53880-1.036902.753201.84090K562FTO
CCDC109BENSG00000005059.1158.67210107.85930-0.878403.063601.86160K562GLRX3
CCDC109BENSG00000005059.1137.3180084.74110-1.183203.522902.63100K562GPKOW
CCDC109BENSG00000005059.11215.25420132.850800.696103.086502.24820K562HSPD1
CCDC109BENSG00000005059.1195.20940147.97280-0.636202.540901.41310K562IGF2BP3
CCDC109BENSG00000005059.1145.6273082.71620-0.858302.268901.47710K562METAP2
CCDC109BENSG00000005059.1177.62110125.99780-0.698902.405601.70540K562NSUN2
CCDC109BENSG00000005059.1162.99430136.05170-1.110904.669503.39140K562PCBP2
CCDC109BENSG00000005059.11102.88110148.55570-0.530001.913901.34300K562PTBP1
CCDC109BENSG00000005059.1179.90360124.32730-0.637802.130101.40740K562SF3A3
CCDC109BENSG00000005059.1164.41070117.58630-0.868302.789501.53370K562STAU1
CCDC109BENSG00000005059.1188.28340133.59810-0.597702.152601.51300K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC109B is not available on ENCORE database.






No RBPs affect the alternative splcing events of CCDC109B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CCDC109B is not avaliable on ENCORE database.