GRTP1

General Information

Gene Name       : GRTP1
Gene ID             : ENSG00000139835.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GRTP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GRTP1ENSG00000139835.130.000.010.01ENCSR000AEF
HepG2GRTP1ENSG00000139835.1313.3612.4812.92ENCSR985KAT
K562GRTP1ENSG00000139835.137.886.597.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GRTP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GRTP1 RNA is bound by 34 proteins.  







eCLIP assay for GRTP1 is not avaliable on ENCORE database.





34 proteins are bound to GRTP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13113978652113978705-3'-UTR,intron-Distal4.901275.76540K562PUM2
chr13113980200113980287-CDS,intron-Distal,intron-Proximal3.547919.28206HepG2PPIG
chr13113980367113980418-CDS,intron-Distal,intron-Proximal4.185133.45799HepG2U2AF2
chr13114005211114005272-CDS,intron-Distal3.244184.94718HepG2PPIG
chr13113980177113980262-CDS,intron-Distal,intron-Proximal4.528654.38235HepG2RBM5
chr13113979938113979985-CDS,intron-Distal,intron-Proximal3.840544.45914HepG2PRPF8
chr13114009636114009683-CDS,intron-Distal,intron-Proximal3.540604.27261HepG2GRWD1
chr13113999134113999186-CDS,intron-Distal,intron-Proximal4.390013.93614HepG2AQR
chr13113980349113980488-CDS,intron-Distal,intron-Proximal3.021533.03237HepG2AQR
chr13114018257114018358-CDS,intron-Distal,intron-Proximal4.272787.60779HepG2AQR
chr13114005285114005336-CDS,intron-Distal,intron-Proximal3.213198.76705HepG2BUD13
chr13114018221114018232-CDS,intron-Distal,intron-Proximal4.2731913.33588K562BUD13
chr13114005269114005333-CDS,intron-Distal,intron-Proximal5.343425.90023K562SF3B4
chr13114018182114018221-CDS,intron-Distal4.7956415.56337K562BUD13
chr13113999127113999189-CDS,intron-Distal,intron-Proximal4.148516.81564HepG2PRPF8
chr13114005125114005184-CDS,intron-Distal,intron-Proximal4.4039912.28861HepG2PRPF8
chr13114005125114005192-CDS,intron-Distal,intron-Proximal3.914376.87708HepG2EFTUD2
chr13114018175114018233-CDS,intron-Distal,intron-Proximal4.6079128.21370HepG2BUD13
chr13113980138113980251-CDS,intron-Distal,intron-Proximal3.8022319.34458HepG2PRPF8
chr13113999251113999274-CDS,intron-Distal3.381363.27569HepG2BCLAF1
chr13114018284114018337-CDS,intron-Distal,intron-Proximal4.693806.30794K562SSB
chr13114005215114005280-CDS,intron-Distal4.115288.70622HepG2GRWD1
chr13113980266113980380-CDS,intron-Distal3.152333.77258HepG2SRSF9
chr13113986867113986933-intron-Distal3.617574.06162HepG2AGGF1
chr13114017995114018028-intron-Distal,intron-Proximal4.080364.83107HepG2EFTUD2
chr13113984354113984400-intron-Distal3.962933.57264HepG2GTF2F1
chr13113984291113984348-intron-Distal3.3837510.06034HepG2AGGF1
chr13113985338113985449-intron-Distal3.227835.97206HepG2CDC40
chr13114004062114004109-intron-Distal4.130684.15139HepG2NKRF
chr13113985389113985501-intron-Distal5.4941518.94922K562AGGF1
chr13113986491113986578-intron-Distal3.219024.22482HepG2IGF2BP1
chr13113985243113985305-intron-Distal3.500434.63615HepG2HNRNPL
chr13113986820113986968-intron-Distal3.241253.40404K562CSTF2T
chr13114017989114018048-intron-Distal,intron-Proximal3.224973.82121HepG2RBM22
chr13114004876114004908-intron-Distal4.683274.28084HepG2DKC1
chr13113986853113986932-intron-Distal3.689066.87869HepG2SFPQ
chr13113985331113985391-intron-Distal3.6748610.18532HepG2XPO5
chr13113985366113985385-intron-Distal3.649559.12590HepG2AGGF1
chr13114005313114005354-intron-Distal,intron-Proximal3.637224.84442HepG2SF3B4
chr13114009517114009616-intron-Distal,intron-Proximal3.156526.42224HepG2RBM22
chr13113980427113980478-intron-Distal,intron-Proximal4.6372211.00570HepG2SF3B4
chr13114018278114018297-intron-Distal,intron-Proximal3.778804.89601HepG2SSB
chr13113985760113985822-intron-Distal5.4055910.65264HepG2AGGF1
chr13113984292113984345-intron-Distal4.7756710.70188K562AGGF1
chr13113984513113984557-intron-Distal4.384063.94788K562AKAP8L
chr13113985496113985551-intron-Distal3.277705.88627HepG2AGGF1
chr13113985563113985604-intron-Distal4.969575.80475HepG2XPO5
chr13113986501113986563-intron-Distal4.654987.66106K562EIF4G2
chr13113993018113993072-intron-Distal3.656794.15543HepG2HLTF
chr13113998035113998132-intron-Distal3.434663.12654K562SLTM
chr13113986838113986910-intron-Distal3.390963.89328K562EIF4G2
chr13113984456113984530-intron-Distal5.179419.57755HepG2GTF2F1
chr13113986509113986567-intron-Distal4.807238.75054HepG2DKC1
chr13113988531113988610-intron-Distal4.505114.68055HepG2CSTF2T
chr13114004667114004750-intron-Distal5.9293712.46423K562EIF4G2
chr13113986833113986923-intron-Distal3.636134.76224HepG2NKRF
chr13113985610113985927-intron-Distal4.097564.87232HepG2YBX3
chr13113996287113996417-intron-Distal4.358565.38422HepG2ILF3
chr13114004665114004788-intron-Distal5.061709.91231HepG2DKC1
chr13113984222113984285-intron-Distal6.7583323.66093K562AGGF1
chr13113984345113984412-intron-Distal6.3361715.28165K562AGGF1
chr13113986846113986931-intron-Distal3.564085.02357HepG2EIF3D
chr13114004671114004729-intron-Distal3.310873.84724HepG2IGF2BP1
chr13114004786114004868-intron-Distal3.681325.60238HepG2IGF2BP1
chr13113986484113986626-intron-Distal3.449054.66496HepG2AGGF1
chr13113988535113988593-intron-Distal4.606854.50179HepG2CDC40
chr13114007880114007945-intron-Distal4.464005.33511HepG2HNRNPK
chr13113986574113986669-intron-Distal3.146903.29355K562TARDBP
chr13114018279114018316-intron-Distal,intron-Proximal3.025603.54493HepG2PRPF8
chr13113986564113986650-intron-Distal5.514928.53131K562EIF4G2
chr13113987127113987188-intron-Distal4.844415.17678K562EIF4G2
chr13113992077113992147-intron-Distal3.740133.07260HepG2AGGF1
chr13113985335113985395-intron-Distal4.060643.80299K562HNRNPL
chr13113982176113982241-intron-Distal3.091303.24137HepG2EIF3D
chr13113998120113998235-intron-Distal3.247253.49108HepG2HLTF
chr13114004788114004856-intron-Distal5.718117.30436HepG2DKC1
chr13113984744113984784-intron-Distal4.737664.59460K562AKAP8L
chr13113986585113986624-intron-Distal5.636715.48038HepG2DKC1
chr13113984437113984543-intron-Distal3.2987216.83971HepG2XPO5
chr13113984218113984282-intron-Distal3.603009.12590HepG2AGGF1
chr13113984509113984559-intron-Distal3.840319.90990K562AGGF1
chr13113986477113986560-intron-Distal4.654185.18780K562AGGF1
chr13113984758113984802-intron-Distal4.1124412.03478K562AGGF1
chr13113987047113987146-intron-Distal3.473577.43300HepG2SFPQ
chr13113993004113993071-intron-Distal3.132163.85411HepG2RBM22
chr13113984444113984557-intron-Distal3.5767816.87644HepG2AGGF1
chr13113985334113985366-intron-Distal5.0449013.58116HepG2AGGF1
chr13113984745113984788-intron-Distal3.6609911.59648HepG2AGGF1
chr13113984743113984783-intron-Distal3.016124.06371HepG2XPO5
chr13114017921114018046-intron-Distal,intron-Proximal3.807166.48632HepG2PRPF4
chr13113985334113985450-intron-Distal5.5919311.03488HepG2GTF2F1
chr13113985331113985389-intron-Distal5.0918021.75214K562AGGF1
chr13113988524113988610-intron-Distal3.478537.44196HepG2PRPF4
chr13114018297114018335-intron-Distal,intron-Proximal4.904226.79019HepG2SSB
chr13113985393113985481-intron-Distal3.370156.95855HepG2HNRNPL
chr13113985276113985326-intron-Distal3.125546.22772HepG2AGGF1
chr13113987066113987210-intron-Distal4.7741813.51886HepG2CSTF2T
chr13113984350113984395-intron-Distal4.062068.13412HepG2AGGF1
chr13113984215113984306-intron-Distal3.359707.65636HepG2GTF2F1
chr13114017913114017984-intron-Distal,intron-Proximal3.9067515.43022HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GRTP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GRTP1 is not available on ENCORE database.

  • 78 RBPs can affect the levels of GRTP1.  








The Knockdown/knockout RNA-Seq assay for GRTP1 is not available on ENCORE database.





78 RBPs can affect the gene expression of GRTP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GRTP1ENSG00000139835.9129.34270536.65130-2.0528034.9421033.37180HepG2ACO1
GRTP1ENSG00000139835.9263.74130796.25600-1.594106.307405.54140HepG2AKAP1
GRTP1ENSG00000139835.9355.00150555.57280-0.646202.595901.58820HepG2AKAP8
GRTP1ENSG00000139835.9418.15510539.25360-0.366902.754401.98880HepG2AKAP8L
GRTP1ENSG00000139835.9528.60410661.96120-0.324602.374201.72970HepG2AUH
GRTP1ENSG00000139835.9285.05030388.84450-0.448002.728401.50560HepG2BUD13
GRTP1ENSG00000139835.9355.92350625.89130-0.814302.781202.00720HepG2CIRBP
GRTP1ENSG00000139835.9326.92440536.63210-0.715008.302707.27160HepG2CKAP4
GRTP1ENSG00000139835.9200.39340358.37260-0.838604.285003.32790HepG2CNOT7
GRTP1ENSG00000139835.9299.12570429.62660-0.522303.993303.24710HepG2CELF1
GRTP1ENSG00000139835.9673.37000461.967600.543506.693305.61380HepG2DAZAP1
GRTP1ENSG00000139835.9148.72920253.83900-0.771203.397202.55070HepG2DDX55
GRTP1ENSG00000139835.9394.97070218.209300.855907.252805.73310HepG2DHX30
GRTP1ENSG00000139835.9356.43180226.237700.655704.826203.92010HepG2DNAJC21
GRTP1ENSG00000139835.9336.67480224.253900.586104.752703.93540HepG2DNAJC2
GRTP1ENSG00000139835.9186.23170271.54180-0.544102.606801.52750HepG2EFTUD2
GRTP1ENSG00000139835.9168.32990264.44440-0.651703.309702.32720HepG2EIF3D
GRTP1ENSG00000139835.9574.43430436.579300.395802.283801.53950HepG2EIF4G2
GRTP1ENSG00000139835.9351.29270524.49060-0.578203.377702.45430HepG2EWSR1
GRTP1ENSG00000139835.9147.01030524.24650-1.8343016.7107015.09170HepG2FIP1L1
GRTP1ENSG00000139835.9451.38940626.05990-0.471903.508902.62750HepG2FUBP3
GRTP1ENSG00000139835.9149.96300312.80660-1.060706.605004.93810HepG2FUS
GRTP1ENSG00000139835.9487.81500253.174400.9461010.329309.05680HepG2HNRNPF
GRTP1ENSG00000139835.9384.42220166.235601.209409.031507.96680HepG2HNRNPLL
GRTP1ENSG00000139835.9241.73310361.58480-0.580903.962702.84340HepG2HNRNPM
GRTP1ENSG00000139835.9510.22870249.302601.0331012.4803011.05730HepG2IGF2BP1
GRTP1ENSG00000139835.9271.08670621.71490-1.197504.090502.89810HepG2IGF2BP3
GRTP1ENSG00000139835.9349.09100257.800300.437203.038502.27300HepG2ILF2
GRTP1ENSG00000139835.9310.50650439.66740-0.501802.333901.57550HepG2LARP4
GRTP1ENSG00000139835.9382.57980706.62430-0.885202.948702.30020HepG2MATR3
GRTP1ENSG00000139835.995.62610276.73370-1.533003.867302.62810HepG2METAP2
GRTP1ENSG00000139835.9310.55940424.09590-0.449502.825902.00860HepG2MSI2
GRTP1ENSG00000139835.9313.00030169.634100.883603.758202.61820HepG2MTPAP
GRTP1ENSG00000139835.9263.87540147.431300.839703.373802.54780HepG2NSUN2
GRTP1ENSG00000139835.9532.91460327.620000.701803.467702.46630HepG2PABPC1
GRTP1ENSG00000139835.9140.77950249.81040-0.827405.664804.51280HepG2PARN
GRTP1ENSG00000139835.9404.15170625.24030-0.629507.171106.26900HepG2PCBP1
GRTP1ENSG00000139835.9447.33750225.104800.9907011.9969010.52630HepG2PPIL4
GRTP1ENSG00000139835.9121.84310195.82950-0.684602.552501.77580HepG2PRPF8
GRTP1ENSG00000139835.9378.90630636.24240-0.747709.063908.18860HepG2PTBP1
GRTP1ENSG00000139835.9272.56340464.18640-0.768109.232108.28170HepG2PUM1
GRTP1ENSG00000139835.9168.86570285.68340-0.758502.951502.22470HepG2RAVER1
GRTP1ENSG00000139835.9197.15370635.26110-1.6880033.5178032.10570HepG2RBM22
GRTP1ENSG00000139835.9403.15530260.420500.630403.422502.24190HepG2RCC2
GRTP1ENSG00000139835.9334.77570708.04600-1.0806017.6320016.49270HepG2NELFE
GRTP1ENSG00000139835.9494.14370659.50440-0.416503.215702.55730HepG2RECQL
GRTP1ENSG00000139835.9436.42800272.759500.678002.036701.43990HepG2RPLP0
GRTP1ENSG00000139835.9141.50950257.36020-0.862904.768303.98560HepG2RPS19
GRTP1ENSG00000139835.9588.94160360.066900.709804.594703.56610HepG2RPS3A
GRTP1ENSG00000139835.9126.86610193.71720-0.610602.035501.35090HepG2RRP9
GRTP1ENSG00000139835.9400.10650224.755700.831908.797407.74630HepG2SAFB2
GRTP1ENSG00000139835.9164.34230258.23120-0.652003.384502.34160HepG2SERBP1
GRTP1ENSG00000139835.9298.86760609.40420-1.027909.142807.86270HepG2SF3A3
GRTP1ENSG00000139835.9340.43960164.515201.049105.928904.92920HepG2SF3B1
GRTP1ENSG00000139835.9424.10660662.34410-0.643207.210006.32710HepG2SF3B4
GRTP1ENSG00000139835.9625.72780419.273200.577506.813105.79150HepG2SLBP
GRTP1ENSG00000139835.9197.01770262.09850-0.411802.047801.48190HepG2SMN1
GRTP1ENSG00000139835.9348.55520717.48940-1.0416019.2148018.20640HepG2SRFBP1
GRTP1ENSG00000139835.9303.99520691.37090-1.1854020.9588019.91400HepG2SRSF1
GRTP1ENSG00000139835.9477.29450248.742100.9401011.7662010.50070HepG2SRSF7
GRTP1ENSG00000139835.9381.38000562.49040-0.560605.771905.02610HepG2SRSF9
GRTP1ENSG00000139835.9317.28210621.50640-0.9700013.5155012.41450HepG2TAF15
GRTP1ENSG00000139835.9283.60930162.143900.806503.086102.32600HepG2TARDBP
GRTP1ENSG00000139835.9469.52750245.220000.9370010.145509.29290HepG2TIAL1
GRTP1ENSG00000139835.9252.76410448.34780-0.826805.549704.67670HepG2U2AF1
GRTP1ENSG00000139835.983.72960149.27830-0.834203.306802.47910HepG2UCHL5
GRTP1ENSG00000139835.9436.21000555.49920-0.348802.442901.44770HepG2UTP18
GRTP1ENSG00000139835.9302.30260521.78110-0.787508.990108.01090HepG2UTP3
GRTP1ENSG00000139835.9530.30130322.524300.717304.500603.08920HepG2XPO5
GRTP1ENSG00000139835.9380.93720248.752100.614703.291202.50500HepG2XRN2
GRTP1ENSG00000139835.9204.25430283.50880-0.473002.706802.04180HepG2ZC3H8
GRTP1ENSG00000139835.9428.04700594.38940-0.473605.002104.32080HepG2ZNF622
GRTP1ENSG00000139835.9146.53500295.81170-1.013406.340405.51310K562AQR
GRTP1ENSG00000139835.9275.34830183.998500.581503.636502.24750K562DDX21
GRTP1ENSG00000139835.979.82610128.60510-0.688002.200501.38670K562EFTUD2
GRTP1ENSG00000139835.9141.44530205.82440-0.541202.517401.82570K562EIF2S2
GRTP1ENSG00000139835.974.64830135.62290-0.861403.137301.92230K562FKBP4
GRTP1ENSG00000139835.957.12630125.14760-1.131404.087303.17550K562PRPF8
GRTP1ENSG00000139835.9280.95230390.02330-0.473202.676501.87310K562PUF60
GRTP1ENSG00000139835.9244.73010164.156700.576003.509102.17990K562SRSF7
GRTP1ENSG00000139835.954.01390100.16620-0.891002.986002.15160K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GRTP1 is not available on ENCORE database.





4 RBPs can affect the splicing of GRTP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGRTP1ENSG00000139835.9chr13-1139887431139888611139802331139804061139991771139992740.105000.000180.01637includedHepG2RBM22
SEGRTP1ENSG00000139835.9chr13-1139925051139926831139802391139804061139991771139992740.131000.000000.00001includedHepG2HNRNPK
SEGRTP1ENSG00000139835.9chr13-114009637114009796114005163114005288114018076114018225-0.324000.000160.00892excludedK562HNRNPU
MXEGRTP1ENSG00000139835.9chr13-1139799751139801611139802331139804061139785041139788921139991771139992740.254000.000690.041911includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GRTP1 is not avaliable on ENCORE database.