COPZ2

General Information

Gene Name       : COPZ2
Gene ID             : ENSG00000005243.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COPZ2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COPZ2ENSG00000005243.92.101.211.66ENCSR000AEF
HepG2COPZ2ENSG00000005243.90.730.830.78ENCSR985KAT
K562COPZ2ENSG00000005243.90.150.050.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COPZ2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COPZ2 RNA is bound by 2 proteins.  







eCLIP assay for COPZ2 is not avaliable on ENCORE database.





2 proteins are bound to COPZ2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174611490546115013-intron-Distal4.676756.47941HepG2DROSHA
chr174611470246114790-intron-Distal5.066507.12974HepG2DGCR8
chr174611469246114792-intron-Distal4.739196.55621HepG2DROSHA
chr174611436846114467-intron-Distal,intron-Proximal4.366693.37130HepG2DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COPZ2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COPZ2 is not available on ENCORE database.

  • 3 RBPs can affect the levels of COPZ2.  








The Knockdown/knockout RNA-Seq assay for COPZ2 is not available on ENCORE database.





3 RBPs can affect the gene expression of COPZ2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COPZ2ENSG00000005243.532.503806.021302.432404.480403.85910HepG2SSB
COPZ2ENSG00000005243.527.356005.638402.278403.383402.84080HepG2TIAL1
COPZ2ENSG00000005243.523.153400.0000099999.999906.490405.61480K562HNRNPC
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COPZ2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COPZ2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COPZ2 is not avaliable on ENCORE database.