LINC00338

General Information

Gene Name       : LINC00338
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00338)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00338 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00338 RNA is bound by 16 proteins.  







eCLIP assay for LINC00338 is not avaliable on ENCORE database.





16 proteins are bound to LINC00338 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177508555275085569+intron-Distal7.65853400.00000HepG2DKC1
chr177508547575085478+intron-Distal3.5751821.56431HepG2SF3A3
chr177508544275085463+intron-Distal,intron-Proximal4.9329987.18277HepG2XPO5
chr177508543375085463+intron-Distal,intron-Proximal4.8506352.21606K562SSB
chr177508543975085467+intron-Distal,intron-Proximal3.5435444.74773HepG2NOLC1
chr177508487975084965+5'-UTR,intron-Distal,intron-Proximal4.009624.40149HepG2SRSF1
chr177508544175085460+intron-Distal,intron-Proximal3.4714472.26732HepG2PTBP1
chr177508547775085483+intron-Distal8.91785400.00000HepG2DKC1
chr177508547075085483+intron-Distal3.1982613.62912K562PTBP1
chr177508550875085531+intron-Distal7.15366400.00000HepG2DKC1
chr177508546775085474+intron-Distal5.0322546.87733K562SSB
chr177508550075085559+intron-Distal3.6368171.00612HepG2NOLC1
chr177508546375085471+intron-Distal4.3135646.75198HepG2XPO5
chr177508489375084945+5'-UTR,intron-Distal3.748924.11395HepG2NCBP2
chr177508932075089406+5'-UTR,intron-Distal,intron-Proximal3.108448.11691K562AQR
chr177508498575085069+5'-UTR,intron-Distal,intron-Proximal3.937433.41051HepG2SRSF1
chr177508554075085545+intron-Distal6.98679400.00000HepG2DKC1
chr177508491375084950+5'-UTR,intron-Distal4.205794.10264K562ZNF622
chr177508543475085469+intron-Distal,intron-Proximal3.0119538.21684K562PTBP1
chr177508936975089434+5'-UTR,intron-Distal,intron-Proximal4.996515.35117HepG2PRPF8
chr177508943475089504+intron-Distal,intron-Proximal3.430983.78727K562PRPF8
chr177508934575089436+5'-UTR,intron-Distal,intron-Proximal5.1205718.78095K562TARDBP
chr177508550375085508+intron-Distal7.12307400.00000HepG2DKC1
chr177508479875084893+5'-UTR,intron-Distal4.6732010.22040HepG2NCBP2
chr177508546175085469+intron-Distal3.4200667.42619HepG2PTBP1
chr177508944975089504+intron-Distal,intron-Proximal3.716468.17562K562AQR
chr177508547175085488+intron-Distal3.9440625.42490K562SMNDC1
chr177508544275085471+intron-Distal,intron-Proximal4.3513558.53097K562SMNDC1
chr177508502475085076+5'-UTR,intron-Distal,intron-Proximal4.2932611.70689HepG2PRPF8
chr177508544175085462+intron-Distal,intron-Proximal7.33738400.00000HepG2DKC1
chr177508554575085552+intron-Distal7.44433400.00000HepG2DKC1
chr177508547375085484+intron-Distal4.2899616.00677HepG2SMNDC1
chr177508553175085540+intron-Distal7.12187400.00000HepG2DKC1
chr177508529475085356+5'-UTR,intron-Proximal3.226356.53346K562ZNF622
chr177508542775085441+intron-Proximal3.2456460.84977HepG2PTBP1
chr177508529875085361+5'-UTR,intron-Proximal3.7935610.42618HepG2PPIG
chr177508523175085287+5'-UTR,intron-Proximal3.917546.18214HepG2GRWD1
chr177508540775085417+intron-Proximal5.95505400.00000HepG2XPO5
chr177508538675085427+intron-Proximal4.0717236.01989HepG2PTBP1
chr177508528775085367+5'-UTR,intron-Proximal3.5688511.08187HepG2GRWD1
chr177508540175085426+intron-Proximal3.0988716.30252HepG2NOLC1
chr177508542775085452+intron-Proximal3.7088339.83153HepG2SMNDC1
chr177508542575085429+intron-Proximal5.79274400.00000HepG2XPO5
chr177508539375085405+intron-Proximal5.0653858.54616HepG2XPO5
chr177508542975085442+intron-Proximal4.82122400.00000HepG2XPO5
chr177508538875085400+intron-Proximal3.0617715.42323HepG2SF3A3
chr177508541775085425+intron-Proximal6.01474400.00000HepG2XPO5
chr177508541575085424+intron-Proximal3.5453216.79287K562AATF
chr177508541775085426+intron-Proximal7.53698400.00000HepG2DKC1
chr177508543075085440+intron-Proximal7.02300400.00000HepG2DKC1
chr177508542675085428+intron-Proximal6.58166400.00000HepG2DKC1
chr177508532975085357+5'-UTR,intron-Proximal5.1793636.38693HepG2PRPF8
chr177508538875085427+intron-Proximal3.6279617.61140K562SSB
chr177508538875085407+intron-Proximal7.57519400.00000HepG2DKC1
chr177508542875085432+intron-Proximal4.7181156.56907K562SSB
chr177508535775085424+intron-Proximal3.0765329.79904HepG2PRPF8
chr177508542975085439+intron-Proximal3.2879334.72751HepG2NOLC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00338 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00338 is not available on ENCORE database.

  • 71 RBPs can affect the levels of LINC00338.  








The Knockdown/knockout RNA-Seq assay for LINC00338 is not available on ENCORE database.





71 RBPs can affect the gene expression of LINC00338 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00338ENSG00000234912.5232.17660159.974500.537302.319601.40560HepG2ADAR
LINC00338ENSG00000234912.5403.56060220.941600.869004.964703.70640HepG2BCCIP
LINC00338ENSG00000234912.5309.60720168.081200.881205.930405.09390HepG2BOP1
LINC00338ENSG00000234912.5344.03750254.751600.433403.003702.13720HepG2DDX19B
LINC00338ENSG00000234912.5492.26230278.277800.822806.214205.31260HepG2DDX3X
LINC00338ENSG00000234912.5320.88670217.241300.562702.142501.45370HepG2DDX55
LINC00338ENSG00000234912.5234.88440159.666400.556803.249302.55260HepG2DNAJC2
LINC00338ENSG00000234912.5470.72260253.957700.890206.863705.85450HepG2EIF4A3
LINC00338ENSG00000234912.5416.37380247.262600.751703.973103.15550HepG2EIF4B
LINC00338ENSG00000234912.5759.46850472.346400.685009.469208.46620HepG2ETF1
LINC00338ENSG00000234912.5250.07550157.027500.671203.328002.47030HepG2FUBP3
LINC00338ENSG00000234912.5371.92650256.231300.537502.797402.10170HepG2FXR1
LINC00338ENSG00000234912.5413.86530237.692800.800005.589804.65750HepG2G3BP1
LINC00338ENSG00000234912.5394.48520252.340500.644503.919602.84790HepG2G3BP2
LINC00338ENSG00000234912.5156.53090235.50420-0.589302.582901.60190HepG2GNB2L1
LINC00338ENSG00000234912.5236.28450162.628100.538802.210001.62770HepG2HNRNPA1
LINC00338ENSG00000234912.5317.12210180.895000.809804.990904.07970HepG2HNRNPC
LINC00338ENSG00000234912.5552.62980240.683801.1991013.3847011.95910HepG2HNRNPK
LINC00338ENSG00000234912.5566.99010342.998000.725009.957208.75380HepG2HNRNPL
LINC00338ENSG00000234912.5304.82540212.859700.518002.321201.44900HepG2HNRNPM
LINC00338ENSG00000234912.5304.71380179.698900.761806.049705.18230HepG2HNRNPU
LINC00338ENSG00000234912.5338.15990241.609800.484902.194801.58510HepG2IGF2BP2
LINC00338ENSG00000234912.5388.66910243.017700.677403.475802.33540HepG2KHSRP
LINC00338ENSG00000234912.5375.88970256.320700.552302.883002.21410HepG2MAGOH
LINC00338ENSG00000234912.5594.97200263.827301.1731012.2492010.96590HepG2NCBP2
LINC00338ENSG00000234912.5474.76190234.956301.014709.108407.81730HepG2PABPC4
LINC00338ENSG00000234912.5295.57480177.869500.732605.318504.19430HepG2PARN
LINC00338ENSG00000234912.5371.11630255.315200.539503.844003.15330HepG2PCBP1
LINC00338ENSG00000234912.5280.41010167.531400.743003.499102.60040HepG2PRPF8
LINC00338ENSG00000234912.5269.85770356.44340-0.401501.878001.37320HepG2PUF60
LINC00338ENSG00000234912.5267.77560378.10860-0.497802.882902.19920HepG2PUM2
LINC00338ENSG00000234912.5441.73570278.189400.667004.513003.22650HepG2RBM27
LINC00338ENSG00000234912.5354.27770269.263800.395802.090101.54440HepG2RECQL
LINC00338ENSG00000234912.5370.28490266.828100.472602.196301.57830HepG2RPLP0
LINC00338ENSG00000234912.5429.39500272.658400.655103.815902.28450HepG2SART3
LINC00338ENSG00000234912.5400.93400270.484700.567704.072403.37750HepG2SF3B4
LINC00338ENSG00000234912.5370.78140229.464400.692202.458001.55950HepG2SMNDC1
LINC00338ENSG00000234912.5376.82760282.320800.416502.352801.90720HepG2SRSF1
LINC00338ENSG00000234912.5301.09510177.780500.760003.688602.51590HepG2SRSF3
LINC00338ENSG00000234912.5250.91990351.95060-0.488102.963402.31720HepG2SRSF5
LINC00338ENSG00000234912.5374.94600243.318700.623704.741603.86810HepG2SRSF7
LINC00338ENSG00000234912.5535.42760387.134400.467804.119503.52040HepG2SSB
LINC00338ENSG00000234912.5373.77470251.838500.569602.926501.79310HepG2STIP1
LINC00338ENSG00000234912.5293.24490400.25220-0.448802.859902.23000HepG2SUCLG1
LINC00338ENSG00000234912.5280.05590162.722700.783204.471603.57760HepG2TARDBP
LINC00338ENSG00000234912.5245.62290176.172300.479402.537201.99260HepG2TRIM56
LINC00338ENSG00000234912.5284.23920127.732201.153908.524607.19150HepG2UCHL5
LINC00338ENSG00000234912.5319.63200197.974000.691002.751501.74980HepG2UPF2
LINC00338ENSG00000234912.5750.15990275.375401.4457033.0612031.33990HepG2UTP3
LINC00338ENSG00000234912.5364.56990212.870100.776104.188503.30290HepG2XRN2
LINC00338ENSG00000234912.51225.44290624.744800.9719014.1568012.97350K562AQR
LINC00338ENSG00000234912.5977.98390790.624400.306702.465101.54580K562CELF1
LINC00338ENSG00000234912.5377.47140274.041200.461902.959401.59210K562DDX6
LINC00338ENSG00000234912.5472.83310327.971500.527704.238502.83710K562GLRX3
LINC00338ENSG00000234912.5307.00710211.697800.536202.726802.13410K562HNRNPC
LINC00338ENSG00000234912.5316.10270189.045700.741604.837103.27460K562HNRNPF
LINC00338ENSG00000234912.5572.66800380.377700.590202.663701.63040K562HNRNPL
LINC00338ENSG00000234912.5644.60030420.328100.616806.597705.20940K562HNRNPU
LINC00338ENSG00000234912.5287.63950188.766100.607603.437101.67340K562LSM11
LINC00338ENSG00000234912.5551.85240344.820600.678307.749306.45650K562MTPAP
LINC00338ENSG00000234912.5596.65420383.119200.639007.926506.75330K562NSUN2
LINC00338ENSG00000234912.5426.26060208.435701.032009.266006.40810K562NUSAP1
LINC00338ENSG00000234912.5549.47400277.898900.983404.810003.40220K562PABPN1
LINC00338ENSG00000234912.5374.70510206.682300.858202.835701.39210K562PHF6
LINC00338ENSG00000234912.5617.94160415.911400.571104.091702.14730K562PKM
LINC00338ENSG00000234912.5347.29810189.809100.871506.550305.06310K562PSIP1
LINC00338ENSG00000234912.5263.07460173.175300.603103.063502.01360K562RCC2
LINC00338ENSG00000234912.5569.51070291.865500.964304.283102.64620K562SNRNP200
LINC00338ENSG00000234912.5308.62780164.165600.910606.189604.48830K562SRFBP1
LINC00338ENSG00000234912.5532.22840387.323400.458403.982002.88080K562SRPK2
LINC00338ENSG00000234912.5448.36450317.192700.499203.238602.47750K562SRSF1
LINC00338ENSG00000234912.5537.31550395.222700.443002.547901.35260K562STAU1
LINC00338ENSG00000234912.5470.43810320.958500.551503.684902.86440K562TARDBP
LINC00338ENSG00000234912.5317.14290182.564700.796604.870903.59770K562TIAL1
LINC00338ENSG00000234912.5346.59260193.950400.837505.952204.44450K562TRIM56
LINC00338ENSG00000234912.5473.79580347.597200.446702.962202.05760K562WDR3
LINC00338ENSG00000234912.5498.38660361.467400.463304.085203.07190K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00338 is not available on ENCORE database.





1 RBPs can affect the splicing of LINC00338 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLINC00338ENSG00000234912.5chr17+7508520875085353750852347508535375084754750850310.090000.001300.00881longerK562AQR
A5SSLINC00338ENSG00000234912.5chr17+7508483075085067750848307508503175085234750853530.096000.006530.08975longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00338 is not avaliable on ENCORE database.