KCTD2

General Information

Gene Name       : KCTD2
Gene ID             : ENSG00000180901.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCTD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCTD2ENSG00000180901.1010.9413.6012.27ENCSR000AEF
HepG2KCTD2ENSG00000180901.1020.2021.2620.73ENCSR985KAT
K562KCTD2ENSG00000180901.1016.1015.4215.76ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCTD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCTD2 RNA is bound by 16 proteins.  







eCLIP assay for KCTD2 is not avaliable on ENCORE database.





16 proteins are bound to KCTD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177305553273055644+3'-UTR,CDS,intron-Proximal4.433093.59236HepG2AQR
chr177306019273060258+3'-UTR3.568833.22800K562AKAP1
chr177305819473058293+3'-UTR,CDS,intron-Proximal3.915933.18234K562BUD13
chr177306066473060736+3'-UTR3.702899.72842K562UPF1
chr177306141373061443+3'-UTR4.360404.46422K562UPF1
chr177306014173060246+3'-UTR4.098873.45716HepG2AKAP1
chr177305975773059858+3'-UTR3.417834.01163K562RBM15
chr177306026873060327+3'-UTR4.7854211.27586K562UPF1
chr177306003173060107+3'-UTR4.8041611.27586K562UPF1
chr177306169673061730+3'-UTR4.545374.85237K562UPF1
chr177306018673060268+3'-UTR4.3321113.92665K562UPF1
chr177306010773060186+3'-UTR4.8576211.27586K562UPF1
chr177305938773059449+3'-UTR4.089453.64119HepG2UPF1
chr177304528573045444+3'-UTR,5'-UTR,CDS,intron-Proximal3.117773.65461K562BUD13
chr177306091473060975+3'-UTR3.871416.84689K562UPF1
chr177303130773031386+5'-UTR,intron-Proximal4.247896.65517HepG2U2AF2
chr177305614873056209+intron-Distal4.853345.17615K562AQR
chr177303120073031306+intron-Distal,intron-Proximal3.1463617.01523K562ZNF622
chr177303000073030081+intron-Distal,intron-Proximal3.128333.40004HepG2SSB
chr177305875973058829+intron-Distal5.320388.32644HepG2HNRNPL
chr177303119973031214+intron-Distal3.415969.76731K562SRSF1
chr177303120073031252+intron-Distal,intron-Proximal5.1624814.77083K562GRWD1
chr177302999373030079+intron-Distal,intron-Proximal4.077934.01859K562SSB
chr177303127773031290+intron-Proximal5.7612838.74507HepG2XPO5
chr177303126073031263+intron-Proximal4.4486257.44214K562NSUN2
chr177303005073030093+intron-Proximal7.29600400.00000K562NSUN2
chr177303127773031291+intron-Proximal6.81559400.00000K562NSUN2
chr177303122973031291+intron-Proximal3.399245.39705K562XRCC6
chr177303003973030050+intron-Proximal6.85436400.00000K562NSUN2
chr177303003173030088+intron-Proximal3.1751625.88582K562WRN
chr177303003073030079+intron-Proximal3.300276.79218K562PCBP1
chr177303126373031277+intron-Proximal6.46391400.00000K562NSUN2
chr177303125173031260+intron-Proximal4.3347055.91847K562NSUN2
chr177303124673031277+intron-Proximal5.1925238.51693HepG2XPO5
chr177303125273031289+intron-Proximal4.1178011.42642K562GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCTD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCTD2 is not available on ENCORE database.

  • 92 RBPs can affect the levels of KCTD2.  








The Knockdown/knockout RNA-Seq assay for KCTD2 is not available on ENCORE database.





92 RBPs can affect the gene expression of KCTD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCTD2ENSG00000180901.61448.618501048.501400.466203.744402.65720HepG2ABCF1
KCTD2ENSG00000180901.61048.07210877.564100.256102.480401.89950HepG2ACO1
KCTD2ENSG00000180901.61637.192001224.479700.419002.781902.24860HepG2AKAP1
KCTD2ENSG00000180901.62052.679201304.248700.6542015.8029014.39890HepG2AUH
KCTD2ENSG00000180901.6977.07330697.808700.485504.223603.50220HepG2BOP1
KCTD2ENSG00000180901.61480.523001050.813400.494503.299802.22720HepG2CCAR1
KCTD2ENSG00000180901.61349.61450962.556900.487504.202903.26170HepG2CIRBP
KCTD2ENSG00000180901.61267.25290949.349400.416601.942501.30670HepG2CNOT7
KCTD2ENSG00000180901.6385.59070640.62860-0.732406.636505.60540HepG2CPSF6
KCTD2ENSG00000180901.61635.457101103.585400.5674010.425509.33290HepG2CELF1
KCTD2ENSG00000180901.61013.81320811.591400.320903.800102.84150HepG2DDX19B
KCTD2ENSG00000180901.6931.29840737.587800.336302.939701.74950HepG2DDX1
KCTD2ENSG00000180901.6508.95360722.80980-0.506104.160003.34420HepG2DDX21
KCTD2ENSG00000180901.6470.57120751.00270-0.674405.075403.39210HepG2DDX27
KCTD2ENSG00000180901.62249.268401172.927300.9392014.0830012.77910HepG2DDX3X
KCTD2ENSG00000180901.61813.689501070.378900.760708.272707.17250HepG2EIF4A3
KCTD2ENSG00000180901.6599.627401042.23230-0.797506.286705.28070HepG2EIF4B
KCTD2ENSG00000180901.61666.883601058.756200.654706.493205.36280HepG2FIP1L1
KCTD2ENSG00000180901.61261.49110817.065800.626504.375202.98860HepG2FUS
KCTD2ENSG00000180901.61348.078401001.871600.428103.021902.32790HepG2G3BP1
KCTD2ENSG00000180901.61354.688001063.689500.348802.393801.56640HepG2G3BP2
KCTD2ENSG00000180901.6714.24230515.243800.471103.164202.19880HepG2GEMIN5
KCTD2ENSG00000180901.6919.84850726.208400.340901.876001.34160HepG2GPKOW
KCTD2ENSG00000180901.61094.16290812.184200.429803.530402.75490HepG2HNRNPC
KCTD2ENSG00000180901.61324.653901122.481900.238802.123401.48870HepG2HNRNPF
KCTD2ENSG00000180901.61382.293001014.618600.446003.870503.05620HepG2HNRNPK
KCTD2ENSG00000180901.6956.39290693.033500.464603.463902.76850HepG2HNRNPLL
KCTD2ENSG00000180901.6986.59450730.555900.433403.995602.87210HepG2HNRNPM
KCTD2ENSG00000180901.61102.50580806.814900.450406.320905.43440HepG2HNRNPU
KCTD2ENSG00000180901.61673.583401080.453200.631206.514205.51840HepG2MAGOH
KCTD2ENSG00000180901.61859.555101112.061200.741608.615107.52990HepG2NCBP2
KCTD2ENSG00000180901.61494.894901176.611700.345303.717402.83060HepG2NOL12
KCTD2ENSG00000180901.61079.97270737.151000.550902.287801.30500HepG2NONO
KCTD2ENSG00000180901.6440.90320614.50240-0.479003.097702.30730HepG2NSUN2
KCTD2ENSG00000180901.61214.37220925.287900.392104.987203.98060HepG2PRPF4
KCTD2ENSG00000180901.61285.37010813.061200.660604.431502.90980HepG2PRPF6
KCTD2ENSG00000180901.61403.693001039.157500.433706.318305.55740HepG2PTBP1
KCTD2ENSG00000180901.61881.87170893.846501.0740040.9832039.17290HepG2PUS1
KCTD2ENSG00000180901.6768.753101125.41320-0.549906.921205.99850HepG2QKI
KCTD2ENSG00000180901.61568.470501251.591500.325503.684403.10880HepG2RBM22
KCTD2ENSG00000180901.61330.896201021.392400.381803.540102.78470HepG2RBM25
KCTD2ENSG00000180901.61874.644201209.254400.632408.083107.01110HepG2RPLP0
KCTD2ENSG00000180901.6997.37440733.250200.443702.201201.35650HepG2RPS10
KCTD2ENSG00000180901.6414.12600612.42930-0.564503.555902.67970HepG2RRP9
KCTD2ENSG00000180901.6424.96020718.50670-0.757708.633207.58900HepG2SAFB2
KCTD2ENSG00000180901.61933.83220955.244401.0174011.8433010.38850HepG2SF3A3
KCTD2ENSG00000180901.6538.70790685.96980-0.348602.019101.41120HepG2SF3B1
KCTD2ENSG00000180901.6862.651001076.99650-0.320203.586102.80390HepG2SLBP
KCTD2ENSG00000180901.6706.53440837.90420-0.246002.176901.59560HepG2SMN1
KCTD2ENSG00000180901.62021.504001413.627300.5159011.0853010.26340HepG2SRFBP1
KCTD2ENSG00000180901.6956.815901129.25560-0.239102.114901.68550HepG2SRSF1
KCTD2ENSG00000180901.61292.37980738.096000.808007.601905.87230HepG2SRSF3
KCTD2ENSG00000180901.61455.104101102.816700.399803.634302.85340HepG2SRSF7
KCTD2ENSG00000180901.61720.963101227.364600.487609.225108.39510HepG2SSB
KCTD2ENSG00000180901.6922.724501273.75850-0.465102.956501.58300HepG2SUGP2
KCTD2ENSG00000180901.6367.30760799.03290-1.1213012.5451011.28040HepG2SUPV3L1
KCTD2ENSG00000180901.6434.310601015.03810-1.2247027.9260026.38470HepG2TAF15
KCTD2ENSG00000180901.6526.17590783.98650-0.575306.060505.37270HepG2TIAL1
KCTD2ENSG00000180901.6419.64860790.97860-0.9145016.9270015.69140HepG2TRIM56
KCTD2ENSG00000180901.61777.18710905.751000.9723016.0720014.50870HepG2U2AF1
KCTD2ENSG00000180901.61037.89760847.156800.292903.073002.34540HepG2UPF1
KCTD2ENSG00000180901.61160.24240731.604900.665204.449203.15730HepG2UPF2
KCTD2ENSG00000180901.61328.10780817.894900.6993014.9482013.72300HepG2UTP3
KCTD2ENSG00000180901.6719.07860913.14440-0.344703.219402.50460HepG2ZC3H8
KCTD2ENSG00000180901.61230.04270931.708800.400706.320505.58180HepG2ZNF622
KCTD2ENSG00000180901.61201.92180796.533100.593409.743108.76040K562AGGF1
KCTD2ENSG00000180901.61168.60540875.241500.416903.620002.45760K562AKAP8
KCTD2ENSG00000180901.61063.05010828.821900.359002.693602.04930K562AKAP8L
KCTD2ENSG00000180901.62411.582201091.106301.1441023.9108022.37290K562AQR
KCTD2ENSG00000180901.61087.12260869.620700.322002.922301.98510K562ATP5C1
KCTD2ENSG00000180901.61186.28710951.923000.317402.657201.51160K562CCDC124
KCTD2ENSG00000180901.6776.38910604.809300.360202.543601.79070K562CPSF6
KCTD2ENSG00000180901.6422.48920597.22240-0.499405.061103.26200K562DDX27
KCTD2ENSG00000180901.6788.38180568.290300.472204.282302.94570K562DDX3X
KCTD2ENSG00000180901.61359.569701013.400000.423805.759204.87030K562DDX47
KCTD2ENSG00000180901.6684.86750518.530000.401303.190202.33750K562EIF3G
KCTD2ENSG00000180901.6965.25630593.721000.701008.259106.84090K562EIF4A3
KCTD2ENSG00000180901.61648.339801336.949300.302003.560602.49540K562EIF4G2
KCTD2ENSG00000180901.61150.69730829.653500.471804.342103.26390K562FIP1L1
KCTD2ENSG00000180901.6874.02660615.469700.505904.088403.04490K562FMR1
KCTD2ENSG00000180901.6922.58510617.444500.579307.591206.65490K562FXR1
KCTD2ENSG00000180901.6803.57300577.406600.476703.846702.91780K562GPKOW
KCTD2ENSG00000180901.6928.91290709.686100.388303.102202.47460K562HNRNPC
KCTD2ENSG00000180901.61037.62540682.442700.604405.167703.85140K562HNRNPM
KCTD2ENSG00000180901.61108.84460879.611300.334002.694701.88160K562KIF1C
KCTD2ENSG00000180901.61094.25870841.984900.378002.798401.71580K562MAK16
KCTD2ENSG00000180901.61300.34050985.383400.400003.491802.45220K562MBNL1
KCTD2ENSG00000180901.6750.59160563.629000.413203.133302.19780K562METAP2
KCTD2ENSG00000180901.61849.623101425.054600.376103.320702.07890K562MSI2
KCTD2ENSG00000180901.6955.45740690.680300.468102.666201.80270K562NAA15
KCTD2ENSG00000180901.6881.34720592.869000.571906.296204.47450K562NCBP2
KCTD2ENSG00000180901.6862.16470657.970400.389802.526401.80960K562PRPF8
KCTD2ENSG00000180901.6845.15290685.610000.301702.155101.55730K562PTBP1
KCTD2ENSG00000180901.61967.619701458.712300.431704.528803.49010K562PUF60
KCTD2ENSG00000180901.61158.35100822.013100.494704.382303.72170K562PUS1
KCTD2ENSG00000180901.61068.56270800.887100.415904.281903.55990K562RBM15
KCTD2ENSG00000180901.61077.27290669.265500.686602.453301.34960K562SF1
KCTD2ENSG00000180901.61297.62950816.499700.6683011.6688010.09240K562SF3A3
KCTD2ENSG00000180901.6750.77890508.648200.561605.853604.57730K562SF3B4
KCTD2ENSG00000180901.61048.68620836.522300.326003.661702.60250K562SRPK2
KCTD2ENSG00000180901.6929.68010680.211000.450702.229701.59000K562TARDBP
KCTD2ENSG00000180901.6818.13820656.152600.318202.224501.49770K562TIA1
KCTD2ENSG00000180901.6695.01070474.134000.551603.775702.45650K562U2AF1
KCTD2ENSG00000180901.6676.17870489.731400.465304.014703.04840K562U2AF2
KCTD2ENSG00000180901.61045.40400877.374000.252702.146401.50750K562UPF1
KCTD2ENSG00000180901.6954.55590780.687700.290002.909102.04170K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCTD2 is not available on ENCORE database.





1 RBPs can affect the splicing of KCTD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSKCTD2ENSG00000180901.6chr17+7304528173045423730453147304542373043513730436840.071000.000370.00285longerK562AQR
A3SSKCTD2ENSG00000180901.6chr17+7305558473055811730556047305581173049108730492000.106000.000120.00105longerK562AQR
MXEKCTD2ENSG00000180901.6chr17+73049091730492007305560473055700730453147304542373058214730583400.079000.005190.037111includedK562AQR
MXEKCTD2ENSG00000180901.6chr17+73049091730492007305558473055700730453147304542373058214730583400.081000.004820.034821includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCTD2 is not avaliable on ENCORE database.