LIMD1-AS1

General Information

Gene Name       : LIMD1-AS1
Gene ID             : ENSG00000230530.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LIMD1-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LIMD1-AS1ENSG00000230530.10.230.400.32ENCSR000AEF
HepG2LIMD1-AS1ENSG00000230530.10.260.340.30ENCSR985KAT
K562LIMD1-AS1ENSG00000230530.10.881.301.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LIMD1-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LIMD1-AS1 RNA is bound by 11 proteins.  







eCLIP assay for LIMD1-AS1 is not avaliable on ENCORE database.





11 proteins are bound to LIMD1-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34573052245730527-intron-Distal4.4540373.11695K562XRCC6
chr34573049045730522-intron-Distal4.63876400.00000K562XRCC6
chr34573053245730550-intron-Distal3.946606.28005HepG2XPO5
chr34573048545730489-intron-Distal3.21673400.00000K562SND1
chr34573055345730570-intron-Distal5.199595.90758K562SSB
chr34573049145730527-intron-Distal3.01301400.00000K562WRN
chr34573048645730491-intron-Distal3.3552127.83818K562GEMIN5
chr34573048545730490-intron-Distal4.99894400.00000K562XRCC6
chr34573053945730568-intron-Distal4.4690218.20531K562LIN28B
chr34573055045730565-intron-Distal5.141544.82195HepG2XPO5
chr34573053045730539-intron-Distal3.8189418.35500K562LIN28B
chr34573047745730489-intron-Distal4.91684400.00000K562NSUN2
chr34573048045730542-intron-Distal5.218089.26373K562NIPBL
chr34573048545730527-intron-Distal3.6815916.25809K562AATF
chr34573047645730493-intron-Distal3.6122758.60053HepG2XPO5
chr34573047845730489-intron-Distal3.09870400.00000K562WRN
chr34573052345730553-intron-Distal3.731586.02264K562SSB
chr34573049345730529-intron-Distal3.6537363.43847HepG2XPO5
chr34573048645730527-intron-Distal3.6005517.78160K562PRPF8
chr34573049345730506-intron-Distal4.68714400.00000K562NSUN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LIMD1-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LIMD1-AS1 is not available on ENCORE database.

  • 5 RBPs can affect the levels of LIMD1-AS1.  








The Knockdown/knockout RNA-Seq assay for LIMD1-AS1 is not available on ENCORE database.





5 RBPs can affect the gene expression of LIMD1-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LIMD1-AS1ENSG00000230530.16.1835024.08640-1.961702.161501.64930K562AGGF1
LIMD1-AS1ENSG00000230530.168.7177030.753701.159802.801202.21010K562AQR
LIMD1-AS1ENSG00000230530.18.2434031.01520-1.911702.450501.32480K562HNRNPA2B1
LIMD1-AS1ENSG00000230530.156.0278013.191902.086405.046804.26320K562HNRNPC
LIMD1-AS1ENSG00000230530.17.2349026.59550-1.878102.254901.52020K562KIF1C
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LIMD1-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LIMD1-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LIMD1-AS1 is not avaliable on ENCORE database.