SMIM1

General Information

Gene Name       : SMIM1
Gene ID             : ENSG00000235169.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMIM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMIM1ENSG00000235169.80.000.000.00ENCSR000AEF
HepG2SMIM1ENSG00000235169.813.351.617.48ENCSR985KAT
K562SMIM1ENSG00000235169.817.703.3410.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMIM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMIM1 RNA is bound by 9 proteins.  







eCLIP assay for SMIM1 is not avaliable on ENCORE database.





9 proteins are bound to SMIM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr136924493692505+3'-UTR,CDS5.2643117.53659K562PABPC4
chr136918613691917+3'-UTR,intron-Proximal3.653354.47117K562DDX3X
chr136919103691937+3'-UTR5.200495.94584K562PABPC4
chr136918693691933+3'-UTR4.041906.31568HepG2LARP4
chr136893843689397+5'-UTR4.630126.63177HepG2SSB
chr136893523689384+5'-UTR3.642905.31833HepG2SSB
chr136894043689446+5'-UTR,intron-Proximal3.408416.98138HepG2PRPF8
chr136894023689423+5'-UTR,intron-Proximal4.015767.30031K562AQR
chr136894033689444+5'-UTR,intron-Proximal4.539794.97857HepG2AQR
chr136893553689367+5'-UTR5.0301610.08262K562AQR
chr136894233689446+5'-UTR,intron-Proximal4.486077.50107K562AQR
chr136893673689394+5'-UTR4.2528510.58560K562AQR
chr136897293689785+5'-UTR,intron-Proximal3.806268.17589HepG2PRPF8
chr136893523689355+5'-UTR5.0143110.08262K562AQR
chr136896413689717+5'-UTR4.5603527.82458HepG2DDX3X
chr136893513689403+5'-UTR3.845085.48231K562SSB
chr136896093689663+5'-UTR,intron-Proximal4.756275.68078HepG2AQR
chr136896193689666+5'-UTR,intron-Proximal3.046377.61554K562AQR
chr136893513689396+5'-UTR3.522747.29769HepG2PRPF8
chr136924033692460+CDS3.180314.48159HepG2LARP4
chr136919893692047+CDS4.4189012.61077K562PABPC4
chr136903313690436+intron-Distal3.582193.68836HepG2FKBP4
chr136898053689848+intron-Distal,intron-Proximal5.175354.52669HepG2EFTUD2
chr136918033691851+intron-Proximal3.111555.76243HepG2BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMIM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMIM1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SMIM1.  








The Knockdown/knockout RNA-Seq assay for SMIM1 is not available on ENCORE database.





80 RBPs can affect the gene expression of SMIM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMIM1ENSG00000235169.3169.3759087.858600.946902.580301.67040HepG2ABCF1
SMIM1ENSG00000235169.337.0210094.73970-1.355605.585804.78190HepG2ACO1
SMIM1ENSG00000235169.326.99140123.85460-2.198103.355002.77730HepG2AKAP1
SMIM1ENSG00000235169.367.09350112.03790-0.739702.495701.83790HepG2AUH
SMIM1ENSG00000235169.343.5924014.505601.587402.285601.47060HepG2BCLAF1
SMIM1ENSG00000235169.3166.4202090.634000.876604.236003.43380HepG2DKC1
SMIM1ENSG00000235169.326.856606.080002.143002.078801.46040HepG2DNAJC21
SMIM1ENSG00000235169.333.235106.025502.463504.936104.10470HepG2DNAJC2
SMIM1ENSG00000235169.357.7964018.528701.641103.294202.29570HepG2EEF2
SMIM1ENSG00000235169.327.2559088.69450-1.702302.165701.48040HepG2FIP1L1
SMIM1ENSG00000235169.358.66960152.13910-1.374707.272506.03630HepG2FUBP3
SMIM1ENSG00000235169.3104.0005031.378001.728706.293905.35510HepG2GPKOW
SMIM1ENSG00000235169.334.845606.138202.505004.168103.39760HepG2HNRNPA1
SMIM1ENSG00000235169.365.9665022.385101.559104.413503.53150HepG2HNRNPF
SMIM1ENSG00000235169.320.31370102.76330-2.338803.523502.74050HepG2HNRNPK
SMIM1ENSG00000235169.371.7741029.945801.261003.011902.35920HepG2HNRNPLL
SMIM1ENSG00000235169.323.498606.782301.792601.946701.42940HepG2HNRNPU
SMIM1ENSG00000235169.356.2892022.042001.352503.034502.27880HepG2IGF2BP1
SMIM1ENSG00000235169.321.7556096.72770-2.152502.993301.97160HepG2IGF2BP3
SMIM1ENSG00000235169.3130.9641052.771001.311303.299502.39020HepG2LARP4
SMIM1ENSG00000235169.347.017009.130202.364402.851901.37940HepG2NOLC1
SMIM1ENSG00000235169.376.3842026.561701.523803.988903.09570HepG2NSUN2
SMIM1ENSG00000235169.342.651706.049302.817706.982405.85130HepG2PPIL4
SMIM1ENSG00000235169.343.8342096.65460-1.140804.373203.71940HepG2PTBP1
SMIM1ENSG00000235169.388.5231023.714001.900207.896906.95820HepG2PUF60
SMIM1ENSG00000235169.332.23900107.52110-1.737707.894707.12410HepG2RBM22
SMIM1ENSG00000235169.345.8146015.899701.526702.212701.33460HepG2RBM27
SMIM1ENSG00000235169.342.8838017.773401.270602.311101.44640HepG2RPS10
SMIM1ENSG00000235169.339.5471014.662301.431402.137701.42910HepG2RPS2
SMIM1ENSG00000235169.388.5634018.162302.285708.626807.24230HepG2RPS3A
SMIM1ENSG00000235169.392.507406.040103.9368014.6108013.30650HepG2SAFB2
SMIM1ENSG00000235169.3102.0463022.747502.1653011.8160010.53860HepG2SLBP
SMIM1ENSG00000235169.323.327007.044001.727402.118501.54450HepG2SMN1
SMIM1ENSG00000235169.324.22500121.43740-2.3256013.3821012.50080HepG2SRFBP1
SMIM1ENSG00000235169.327.05000105.04590-1.957308.881308.14170HepG2SRSF1
SMIM1ENSG00000235169.355.5155023.419601.245103.245102.57640HepG2SRSF5
SMIM1ENSG00000235169.339.8694085.45480-1.099903.764103.14240HepG2SRSF9
SMIM1ENSG00000235169.3189.47580105.429700.845604.673904.04250HepG2SSB
SMIM1ENSG00000235169.327.1515094.40140-1.797807.394606.55360HepG2TAF15
SMIM1ENSG00000235169.337.495906.591302.508004.938204.30970HepG2TIAL1
SMIM1ENSG00000235169.372.708106.649103.4508014.2999013.15960HepG2TRIM56
SMIM1ENSG00000235169.3140.6595082.926500.762203.251402.50570HepG2UPF1
SMIM1ENSG00000235169.352.6141016.270201.693104.173902.82190HepG2XPO5
SMIM1ENSG00000235169.349.5234016.091301.621702.370601.69440HepG2XRN2
SMIM1ENSG00000235169.3280.73700157.203600.836505.087004.35660K562AGGF1
SMIM1ENSG00000235169.3316.42740172.735600.873203.704102.52920K562AKAP8
SMIM1ENSG00000235169.3347.03530163.575601.085006.139605.14060K562AKAP8L
SMIM1ENSG00000235169.3358.72160171.626801.0635011.042609.05690K562ATP5C1
SMIM1ENSG00000235169.3120.4082044.538501.434706.319404.84500K562BCLAF1
SMIM1ENSG00000235169.3205.5834061.943501.730604.194302.83790K562CCAR1
SMIM1ENSG00000235169.3285.88030187.872700.605603.497602.15180K562CCDC124
SMIM1ENSG00000235169.3123.0213033.789101.864202.245001.31290K562CSTF2
SMIM1ENSG00000235169.3146.8583065.301401.169104.953902.49890K562DDX1
SMIM1ENSG00000235169.3277.88830133.933801.052902.808401.58770K562DDX21
SMIM1ENSG00000235169.375.6110039.023600.954102.635101.34680K562DDX27
SMIM1ENSG00000235169.3196.11700118.939400.721403.274002.13200K562DDX3X
SMIM1ENSG00000235169.3347.42510179.212900.954906.266405.34180K562DDX47
SMIM1ENSG00000235169.3142.3292063.002501.175704.082302.83280K562EIF3A
SMIM1ENSG00000235169.348.5693021.531701.173502.667101.88340K562EIF3G
SMIM1ENSG00000235169.3199.3095080.035001.316208.669707.07770K562FIP1L1
SMIM1ENSG00000235169.367.76790129.21660-0.931103.870203.17180K562FXR1
SMIM1ENSG00000235169.30.000009.35190-99999.999992.680901.98750K562G3BP2
SMIM1ENSG00000235169.394.0189044.634001.074703.210702.35770K562GPKOW
SMIM1ENSG00000235169.3103.4422031.067001.735306.695104.81240K562IGF2BP2
SMIM1ENSG00000235169.3114.7234032.597501.815203.412602.37310K562MATR3
SMIM1ENSG00000235169.354.83060124.08670-1.178305.116703.44210K562NCBP2
SMIM1ENSG00000235169.3108.8973041.784501.381802.868701.54470K562NONO
SMIM1ENSG00000235169.3316.01460210.454400.586404.032503.14960K562NSUN2
SMIM1ENSG00000235169.3204.2833096.464201.082403.802902.59020K562PABPN1
SMIM1ENSG00000235169.3131.0863062.113601.077403.959201.44990K562PARN
SMIM1ENSG00000235169.3263.2662090.864901.534609.783707.98110K562PPIG
SMIM1ENSG00000235169.3266.28590158.062900.752404.641903.89390K562RBM15
SMIM1ENSG00000235169.360.1161030.433800.982002.317401.55290K562RBM22
SMIM1ENSG00000235169.365.3879032.025301.029702.603801.54670K562NELFE
SMIM1ENSG00000235169.3109.6551047.760201.199003.384102.26800K562RPS3
SMIM1ENSG00000235169.3168.7618075.876001.153206.015204.41470K562SAFB
SMIM1ENSG00000235169.3149.7431067.350501.152604.157402.18930K562SBDS
SMIM1ENSG00000235169.3133.31050207.66770-0.639503.339202.44730K562SF3A3
SMIM1ENSG00000235169.335.29310101.31150-1.521304.261002.62880K562SNRNP200
SMIM1ENSG00000235169.3146.1618046.094201.664804.583603.17020K562SRSF4
SMIM1ENSG00000235169.391.2057029.374801.634406.596004.86180K562SRSF5
SMIM1ENSG00000235169.3101.1361031.485001.683507.300606.09220K562TARDBP
SMIM1ENSG00000235169.388.4600030.370101.542305.744104.49830K562TIA1
SMIM1ENSG00000235169.369.4156029.795401.220103.104601.93670K562TRA2A
SMIM1ENSG00000235169.3295.27780190.941700.628803.778302.75360K562WDR3
SMIM1ENSG00000235169.351.36890119.23500-1.214803.224701.46920K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMIM1 is not available on ENCORE database.





2 RBPs can affect the splicing of SMIM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSSMIM1ENSG00000235169.3chr1+368935136894053689351368935236896263689745-0.479000.000060.01593shorterK562HNRNPUL1
A5SSSMIM1ENSG00000235169.3chr1+368935136894053689351368935236896263689745-0.352000.000280.05652shorterK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMIM1 is not avaliable on ENCORE database.