SLC4A1

General Information

Gene Name       : SLC4A1
Gene ID             : ENSG00000004939.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC4A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC4A1ENSG00000004939.140.000.000.00ENCSR000AEF
HepG2SLC4A1ENSG00000004939.140.000.020.01ENCSR985KAT
K562SLC4A1ENSG00000004939.140.440.590.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC4A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC4A1 RNA is bound by 2 proteins.  







eCLIP assay for SLC4A1 is not avaliable on ENCORE database.





2 proteins are bound to SLC4A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174232673242326830-3'-UTR,5'-UTR,intron-Distal5.513987.04291K562DDX6
chr174232670342326803-3'-UTR,5'-UTR,intron-Distal5.112957.83400K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC4A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC4A1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SLC4A1.  








The Knockdown/knockout RNA-Seq assay for SLC4A1 is not available on ENCORE database.





80 RBPs can affect the gene expression of SLC4A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC4A1ENSG00000004939.939.65180276.87260-2.8038018.8492015.87630K562AARS
SLC4A1ENSG00000004939.9439.11260141.341601.635308.613705.67280K562ADAR
SLC4A1ENSG00000004939.9286.31680154.345200.891406.395804.74110K562AKAP8
SLC4A1ENSG00000004939.9323.36960146.156701.145609.412908.12470K562AKAP8L
SLC4A1ENSG00000004939.9154.03000420.58430-1.4492016.0151013.16720K562APOBEC3C
SLC4A1ENSG00000004939.93226.52930341.946103.2380022.8092021.30420K562AQR
SLC4A1ENSG00000004939.9417.95430138.447801.593904.132802.79190K562CCAR1
SLC4A1ENSG00000004939.9214.93070103.081101.060006.569104.64850K562CIRBP
SLC4A1ENSG00000004939.9879.92590242.226101.860909.131407.17560K562CNOT7
SLC4A1ENSG00000004939.9438.62180147.961601.567706.412103.61280K562CPSF7
SLC4A1ENSG00000004939.91980.64890586.134301.7566061.2337057.76010K562CELF1
SLC4A1ENSG00000004939.91168.59290705.126500.728705.982504.16060K562DDX21
SLC4A1ENSG00000004939.9807.12180410.762700.9744018.3977016.85480K562DDX47
SLC4A1ENSG00000004939.9407.53030155.047501.394103.707302.12840K562DHX30
SLC4A1ENSG00000004939.969.04110157.27670-1.187806.674205.22210K562DKC1
SLC4A1ENSG00000004939.9640.29940157.776902.0208016.3581012.69470K562DNAJC2
SLC4A1ENSG00000004939.91264.74140304.494202.0543037.2479033.72530K562EEF2
SLC4A1ENSG00000004939.9203.21260103.984700.966504.004401.41010K562AGO1
SLC4A1ENSG00000004939.9921.38730140.803002.7100040.7754037.58140K562EIF3A
SLC4A1ENSG00000004939.9351.78790105.811801.7331016.0002014.02330K562EIF3G
SLC4A1ENSG00000004939.92254.08900476.655402.2414040.8070037.75320K562EIF4G2
SLC4A1ENSG00000004939.9594.043202101.77830-1.8230066.8275062.43970K562EXOSC5
SLC4A1ENSG00000004939.9661.96570288.511701.1980016.0195013.80420K562FIP1L1
SLC4A1ENSG00000004939.9158.3837091.951400.784403.421201.79710K562G3BP1
SLC4A1ENSG00000004939.92074.83290312.164802.73250153.93920149.54660K562GLRX3
SLC4A1ENSG00000004939.9720.61550320.729801.167806.165104.98180K562GPKOW
SLC4A1ENSG00000004939.9929.61930217.642002.094609.333406.16670K562HNRNPA0
SLC4A1ENSG00000004939.91342.48030451.086601.5733043.6968040.58830K562HNRNPA1
SLC4A1ENSG00000004939.9240.11360136.824200.811302.465701.33350K562HNRNPA2B1
SLC4A1ENSG00000004939.91036.44740302.696501.7756041.6659039.44560K562HNRNPC
SLC4A1ENSG00000004939.9543.94670270.421901.0082011.016608.72690K562HNRNPF
SLC4A1ENSG00000004939.963.19930237.34650-1.909007.592505.92830K562HNRNPM
SLC4A1ENSG00000004939.9183.96760391.10230-1.088104.196103.22260K562HSPD1
SLC4A1ENSG00000004939.9510.74820221.800601.203202.806401.37560K562ILF2
SLC4A1ENSG00000004939.9690.83840144.696202.2552027.7522024.00600K562ILF3
SLC4A1ENSG00000004939.9363.25550139.690301.378705.195903.16360K562KHDRBS1
SLC4A1ENSG00000004939.9840.35140549.084100.613905.872303.16140K562CCAR2
SLC4A1ENSG00000004939.9273.70580155.109700.819205.108603.91940K562KIF1C
SLC4A1ENSG00000004939.9129.48100293.46080-1.180406.536904.28340K562LARP7
SLC4A1ENSG00000004939.9100.28160270.17100-1.429807.642005.06670K562LSM11
SLC4A1ENSG00000004939.9368.22100100.877701.8679024.8389022.04030K562MATR3
SLC4A1ENSG00000004939.91545.86630508.058901.6052016.2601013.76760K562MSI2
SLC4A1ENSG00000004939.9517.32270328.192100.656404.129403.15930K562MTPAP
SLC4A1ENSG00000004939.91251.49700364.698401.7788012.7639011.32250K562NSUN2
SLC4A1ENSG00000004939.9341.37350119.628401.512707.899005.91930K562PABPN1
SLC4A1ENSG00000004939.97449.738802673.449201.4784039.2444036.54490K562PCBP3
SLC4A1ENSG00000004939.9178.70230494.23350-1.467606.498604.01790K562PKM
SLC4A1ENSG00000004939.94574.066502050.583401.157303.611102.68880K562POLR2G
SLC4A1ENSG00000004939.9510.11060327.577700.638904.025703.01180K562PPIG
SLC4A1ENSG00000004939.998.08460271.43070-1.468507.196605.61710K562PSIP1
SLC4A1ENSG00000004939.935.4356098.20380-1.470606.413005.43700K562PTBP1
SLC4A1ENSG00000004939.9354.66390141.229601.3283014.7199013.33780K562RBM15
SLC4A1ENSG00000004939.9169.7668094.176600.850002.353401.58380K562RBM22
SLC4A1ENSG00000004939.91088.66320291.387301.9014034.1603031.44000K562RPS19
SLC4A1ENSG00000004939.9780.39650216.448501.8501010.730407.41600K562RPS3A
SLC4A1ENSG00000004939.9836.09120234.106601.836408.799906.89710K562RPS3
SLC4A1ENSG00000004939.91130.35480292.476501.9503014.2302011.44810K562RRP9
SLC4A1ENSG00000004939.9629.54730248.063201.343505.851203.25720K562SAFB2
SLC4A1ENSG00000004939.9670.15670220.753701.602003.934902.03300K562SBDS
SLC4A1ENSG00000004939.93206.612201889.109500.7632012.8228010.01570K562SDAD1
SLC4A1ENSG00000004939.9425.08750133.291501.6731010.021607.01790K562SFPQ
SLC4A1ENSG00000004939.9473.19660152.386701.634606.579504.62730K562SLBP
SLC4A1ENSG00000004939.91867.23600368.610002.34060144.23770140.61430K562SRPK2
SLC4A1ENSG00000004939.91076.49650629.306900.7744013.6837011.05160K562SRSF7
SLC4A1ENSG00000004939.93002.713202334.008600.363404.361502.43050K562SRSF9
SLC4A1ENSG00000004939.9770.47250346.133701.154308.615606.34680K562STAU1
SLC4A1ENSG00000004939.9347.11040154.071401.171704.011401.63820K562SUGP2
SLC4A1ENSG00000004939.9364.71670150.270501.279105.528403.30240K562SUPT6H
SLC4A1ENSG00000004939.9952.76320276.860801.7829030.3010027.09880K562SUPV3L1
SLC4A1ENSG00000004939.9381.889102056.84850-2.42920111.75330108.07930K562SYNCRIP
SLC4A1ENSG00000004939.9364.3857097.436601.9028020.2294017.97500K562TARDBP
SLC4A1ENSG00000004939.9797.78040337.271901.2420018.0303014.53760K562TRIP6
SLC4A1ENSG00000004939.92768.902401943.646700.510405.346302.84980K562TRNAU1AP
SLC4A1ENSG00000004939.91049.94250622.264800.754606.059604.14660K562TROVE2
SLC4A1ENSG00000004939.9717.60930293.140501.2915016.6103014.13200K562UCHL5
SLC4A1ENSG00000004939.9253.55850386.69360-0.608904.062403.20760K562UPF1
SLC4A1ENSG00000004939.9560.06970259.267901.111105.677903.96530K562UTP3
SLC4A1ENSG00000004939.91441.19520344.042702.0665062.8830060.16270K562WDR43
SLC4A1ENSG00000004939.92439.15290405.625802.5881017.7900015.01350K562WRN
SLC4A1ENSG00000004939.91999.89620384.976202.3770029.3503026.46340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC4A1 is not available on ENCORE database.





3 RBPs can affect the splicing of SLC4A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC4A1ENSG00000004939.9chr17-4233578042335991423353534233554842336530423367120.117000.004840.04530includedK562AQR
RISLC4A1ENSG00000004939.9chr17-423400034234030242340003423400944234021942340302-0.090000.000320.02313excludedK562SBDS
RISLC4A1ENSG00000004939.9chr17-423400034234030242340003423400944234021942340302-0.086000.001570.08960excludedK562ZC3H8
RISLC4A1ENSG00000004939.9chr17-423400034234030242340003423400944234021942340302-0.076000.007490.04167excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC4A1 is not avaliable on ENCORE database.