TCEB3

General Information

Gene Name       : TCEB3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TCEB3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TCEB3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TCEB3 RNA is bound by 20 proteins.  







eCLIP assay for TCEB3 is not avaliable on ENCORE database.





20 proteins are bound to TCEB3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12408644524086555+3'-UTR4.035559.47718HepG2UPF1
chr12408654124086587+3'-UTR4.002643.11728K562FAM120A
chr12408616124086272+3'-UTR4.8074213.50292K562RBM15
chr12408843224088510+3'-UTR4.947836.34419K562PUM2
chr12406968024069750+5'-UTR4.034563.63902HepG2CSTF2T
chr12406980324069891+5'-UTR3.836603.44758HepG2CSTF2T
chr12406996824070067+5'-UTR,CDS3.5741412.02688K562DDX3X
chr12407736224077522+CDS3.333288.56974K562GRWD1
chr12407892724078982+CDS3.606333.01531K562YBX3
chr12407552424075568+CDS,intron-Proximal3.966113.46958K562YBX3
chr12407766224077728+CDS3.502478.77730K562UCHL5
chr12407821424078289+CDS5.198867.39496HepG2BCLAF1
chr12407740724077488+CDS3.503438.41511K562ZNF622
chr12407799724078070+CDS3.476535.76403K562UCHL5
chr12407819724078260+CDS3.427885.95375K562ZNF622
chr12407736024077420+CDS3.581125.35682HepG2GRWD1
chr12407006224070206+CDS,intron-Distal,intron-Proximal3.080489.88121HepG2PRPF8
chr12408240524082476+CDS3.7023210.26098K562UCHL5
chr12407797724078086+CDS3.276653.85473K562GRWD1
chr12407801624078065+CDS3.086343.34231K562RBM15
chr12408062524080694+CDS3.874305.08388K562UCHL5
chr12407797224078039+CDS3.252986.36421K562ZNF622
chr12408237124082496+CDS3.367276.42940HepG2GRWD1
chr12408235824082447+CDS4.080954.49723K562ZNF800
chr12407742024077545+CDS3.024775.47342HepG2GRWD1
chr12408234224082405+CDS3.074495.01560K562UCHL5
chr12407847724078507+CDS3.294783.73423K562UCHL5
chr12408344224083484+CDS,intron-Proximal3.366973.73423K562UCHL5
chr12407766924077731+CDS4.688385.57576K562FXR2
chr12408236424082470+CDS3.163197.50227HepG2BCLAF1
chr12408085824080936+CDS3.539086.25299K562ZNF622
chr12408276224082827+CDS,intron-Proximal3.336053.68829K562YBX3
chr12407743524077521+CDS4.4473813.91014K562UCHL5
chr12407546124075524+CDS,intron-Proximal5.126945.90023K562SF3B4
chr12407024624070362+intron-Distal3.778414.41726HepG2NKRF
chr12407013424070305+intron-Distal,intron-Proximal3.580597.41728K562PRPF8
chr12407011924070209+intron-Distal,intron-Proximal4.9805514.42760HepG2EFTUD2
chr12407033124070401+intron-Distal4.569805.07516K562XRN2
chr12407016124070213+intron-Distal,intron-Proximal4.061933.67126HepG2NKRF
chr12407016724070203+intron-Distal,intron-Proximal3.619354.04785HepG2XPO5
chr12407023324070336+intron-Distal5.678646.71058HepG2XRN2
chr12407015924070167+intron-Proximal4.072793.69388HepG2XPO5
chr12407852024078572+intron-Proximal4.792564.48002K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TCEB3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TCEB3 is not available on ENCORE database.

  • 96 RBPs can affect the levels of TCEB3.  








The Knockdown/knockout RNA-Seq assay for TCEB3 is not available on ENCORE database.





96 RBPs can affect the gene expression of TCEB3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TCEB3ENSG00000011007.81349.873001037.547700.379502.658201.88840HepG2ASCC1
TCEB3ENSG00000011007.81196.789501491.19520-0.317302.284701.65220HepG2CPSF6
TCEB3ENSG00000011007.81672.054401466.034800.189601.979001.33570HepG2DAZAP1
TCEB3ENSG00000011007.8669.70800846.32440-0.337702.265001.64300HepG2DDX21
TCEB3ENSG00000011007.82109.091801201.184000.8121010.623709.47260HepG2DDX3X
TCEB3ENSG00000011007.81501.769501164.542400.366803.074301.71210HepG2DDX47
TCEB3ENSG00000011007.8502.470501031.92400-1.0382012.0187010.84030HepG2DDX6
TCEB3ENSG00000011007.81086.86840844.030000.364702.393401.53320HepG2EEF2
TCEB3ENSG00000011007.81327.56720991.932100.420403.010102.39240HepG2EIF2S1
TCEB3ENSG00000011007.8876.88100685.146900.355902.113101.31510HepG2EIF3D
TCEB3ENSG00000011007.81752.803701446.307000.277203.129802.24940HepG2EIF4G1
TCEB3ENSG00000011007.82245.367501901.165500.240002.846302.23790HepG2ETF1
TCEB3ENSG00000011007.8489.39840845.19660-0.788305.746204.13080HepG2GRSF1
TCEB3ENSG00000011007.81242.565501012.374500.295503.297802.23710HepG2HDGF
TCEB3ENSG00000011007.81129.938701347.31320-0.253802.458401.57000HepG2HNRNPA2B1
TCEB3ENSG00000011007.8690.26030966.48010-0.485604.153003.31600HepG2HNRNPC
TCEB3ENSG00000011007.81299.340701542.98920-0.247901.964401.34620HepG2IGF2BP1
TCEB3ENSG00000011007.81859.444501042.892500.8342011.4309010.15700HepG2IGF2BP2
TCEB3ENSG00000011007.81105.82950825.499000.421703.530602.24920HepG2LARP7
TCEB3ENSG00000011007.81442.744601112.661100.374702.346801.76310HepG2MATR3
TCEB3ENSG00000011007.81067.18660717.055800.573603.175802.04830HepG2METAP2
TCEB3ENSG00000011007.81609.884901138.854700.499304.132803.36380HepG2NCBP2
TCEB3ENSG00000011007.8981.608401453.71540-0.566508.530407.21640HepG2NOL12
TCEB3ENSG00000011007.81118.042001430.38040-0.355402.753702.00760HepG2NSUN2
TCEB3ENSG00000011007.81187.33870834.481900.508702.419901.60080HepG2PABPC1
TCEB3ENSG00000011007.81563.450301014.151900.624406.269405.19440HepG2PABPC4
TCEB3ENSG00000011007.81491.888001039.877700.520609.167508.16650HepG2PCBP1
TCEB3ENSG00000011007.81408.37830989.995400.508402.971701.89670HepG2PCBP2
TCEB3ENSG00000011007.81762.112201058.120600.7357018.0188016.85230HepG2PTBP1
TCEB3ENSG00000011007.81691.688401473.084300.199502.318201.76590HepG2PUM1
TCEB3ENSG00000011007.81792.979701472.014500.284502.616701.96370HepG2PUM2
TCEB3ENSG00000011007.81499.342101080.051600.473108.482107.50430HepG2PUS1
TCEB3ENSG00000011007.81474.205001145.957500.363303.862403.14080HepG2QKI
TCEB3ENSG00000011007.81636.77510955.466800.776505.055604.11620HepG2RAVER1
TCEB3ENSG00000011007.81624.664001040.035100.643409.357508.17250HepG2RBM25
TCEB3ENSG00000011007.81180.41000808.325500.546202.445201.45060HepG2RCC2
TCEB3ENSG00000011007.81267.69990938.380300.433902.189601.34740HepG2RPS10
TCEB3ENSG00000011007.81249.28890918.037100.444403.590402.68230HepG2RPS2
TCEB3ENSG00000011007.81248.98510937.121200.414303.185702.02800HepG2RPS5
TCEB3ENSG00000011007.81053.15020669.104100.654306.624105.18220HepG2SERBP1
TCEB3ENSG00000011007.82085.479301485.700700.489103.137602.41970HepG2SF3A3
TCEB3ENSG00000011007.81961.567001596.712200.296802.209701.57440HepG2SF3B1
TCEB3ENSG00000011007.81442.071601101.629000.388405.164604.39900HepG2SF3B4
TCEB3ENSG00000011007.81216.13570997.103200.286403.450802.74510HepG2SMN1
TCEB3ENSG00000011007.83209.098301794.778100.8383035.0678033.81110HepG2SRFBP1
TCEB3ENSG00000011007.81836.454401149.866700.6754015.9502015.01400HepG2SRSF1
TCEB3ENSG00000011007.81597.086001370.129900.221002.187401.62350HepG2SRSF5
TCEB3ENSG00000011007.81326.669201539.46340-0.214602.015701.41120HepG2SRSF7
TCEB3ENSG00000011007.81378.37700935.481800.5591010.693409.73260HepG2SRSF9
TCEB3ENSG00000011007.81866.916701558.330200.260603.389702.83500HepG2SSB
TCEB3ENSG00000011007.81764.768801227.463200.523704.373902.79310HepG2SSRP1
TCEB3ENSG00000011007.81684.505301242.880800.438502.782501.45290HepG2SUGP2
TCEB3ENSG00000011007.81141.10270932.962200.290402.434001.95970HepG2TIAL1
TCEB3ENSG00000011007.81691.835501355.698100.319502.880401.98650HepG2TUFM
TCEB3ENSG00000011007.82099.179101169.581800.8437013.3843011.96650HepG2U2AF1
TCEB3ENSG00000011007.8429.87970588.07600-0.452102.726601.97190HepG2UCHL5
TCEB3ENSG00000011007.81927.205501272.080400.5992013.4328012.26150HepG2UTP3
TCEB3ENSG00000011007.81989.481701539.207700.370103.652902.27880K562AARS
TCEB3ENSG00000011007.83095.129503876.03990-0.324602.948301.67980K562ABCF1
TCEB3ENSG00000011007.82754.822601789.815000.6220016.8497015.57190K562AGGF1
TCEB3ENSG00000011007.82454.299501966.728900.319402.863301.85990K562AKAP8
TCEB3ENSG00000011007.82753.637401862.381900.564107.827106.67560K562AKAP8L
TCEB3ENSG00000011007.84384.902303270.980700.422703.367901.99600K562APOBEC3C
TCEB3ENSG00000011007.85126.294803163.395200.6963011.2267010.16190K562AQR
TCEB3ENSG00000011007.81716.504802269.70480-0.403003.434602.46330K562BOP1
TCEB3ENSG00000011007.81954.986102413.44500-0.303902.084901.39570K562CPSF6
TCEB3ENSG00000011007.83832.391603049.337300.329603.792503.04680K562DDX47
TCEB3ENSG00000011007.82619.214802004.067400.386103.573402.56110K562DKC1
TCEB3ENSG00000011007.82308.566902977.92930-0.367305.741604.76170K562EIF2S2
TCEB3ENSG00000011007.81908.556401353.163500.496007.839306.50530K562EIF3G
TCEB3ENSG00000011007.81555.728901292.776300.267002.006401.30420K562EIF4A3
TCEB3ENSG00000011007.81614.098202110.20830-0.386704.243002.63260K562EXOSC5
TCEB3ENSG00000011007.81797.564002455.43410-0.449903.688002.69630K562FMR1
TCEB3ENSG00000011007.83011.882101344.442301.1636047.7102045.37300K562FXR1
TCEB3ENSG00000011007.81793.412802304.32410-0.361602.755601.96280K562GPKOW
TCEB3ENSG00000011007.82060.956703968.54980-0.9453023.1323020.85460K562GRSF1
TCEB3ENSG00000011007.8942.246901684.91040-0.838506.419605.54790K562HNRNPC
TCEB3ENSG00000011007.82113.423201589.697700.410703.401502.01490K562HNRNPK
TCEB3ENSG00000011007.83153.915602291.494200.460804.063002.92130K562HNRNPM
TCEB3ENSG00000011007.82643.653803777.44180-0.514906.567305.35520K562HSPD1
TCEB3ENSG00000011007.82815.719301976.458800.510505.430704.19210K562KIF1C
TCEB3ENSG00000011007.82167.259201672.817000.373502.450501.65610K562MAGOH
TCEB3ENSG00000011007.82359.637401891.952400.318602.498301.49450K562MAK16
TCEB3ENSG00000011007.82048.878701669.408000.295402.688001.77970K562MATR3
TCEB3ENSG00000011007.81382.714802249.24450-0.701907.554206.07420K562METAP2
TCEB3ENSG00000011007.81421.029402419.73560-0.7679024.3952022.34760K562MTPAP
TCEB3ENSG00000011007.82541.656201551.945800.711603.567302.53570K562NAA15
TCEB3ENSG00000011007.82107.450902688.63700-0.351408.674407.45590K562NSUN2
TCEB3ENSG00000011007.82220.574001488.374400.577107.696306.03500K562PCBP2
TCEB3ENSG00000011007.82149.725302684.18170-0.320302.274901.52080K562PCBP3
TCEB3ENSG00000011007.82606.943603162.61350-0.278802.199601.47140K562PPIG
TCEB3ENSG00000011007.82796.410101594.549200.8103013.4700011.80440K562PRPF8
TCEB3ENSG00000011007.83051.923601625.254100.9090022.2180020.40960K562PTBP1
TCEB3ENSG00000011007.84948.497104044.556400.290902.171701.45060K562PUF60
TCEB3ENSG00000011007.84256.129001846.984601.2043030.0843028.27270K562PUS1
TCEB3ENSG00000011007.83135.305101799.597600.8008021.7045019.98230K562RBM15
TCEB3ENSG00000011007.82108.326501558.369300.436004.506803.40400K562RBM22
TCEB3ENSG00000011007.81480.710001140.960600.375903.436701.93830K562RBM25
TCEB3ENSG00000011007.82549.966101834.372700.475106.117804.50230K562SAFB
TCEB3ENSG00000011007.82375.541801250.884700.9252010.866709.10820K562SF3B4
TCEB3ENSG00000011007.83229.757401994.367000.695403.294901.90720K562SNRNP200
TCEB3ENSG00000011007.82720.281901593.302200.7716015.9615014.26610K562SRSF1
TCEB3ENSG00000011007.81150.854401395.81860-0.278402.541401.31840K562SSB
TCEB3ENSG00000011007.83313.741702065.068800.6822012.4118010.68030K562SYNCRIP
TCEB3ENSG00000011007.82506.328303259.61560-0.379103.645902.00150K562TRIP6
TCEB3ENSG00000011007.81720.531501165.984000.561205.015503.45340K562U2AF1
TCEB3ENSG00000011007.81146.965601634.16260-0.510704.686903.32370K562UCHL5
TCEB3ENSG00000011007.82056.322002850.81140-0.4713011.160809.83770K562UPF1
TCEB3ENSG00000011007.81788.397402439.36130-0.447805.734604.45230K562WDR3
TCEB3ENSG00000011007.82918.865502536.569900.202402.157201.40240K562WDR43
TCEB3ENSG00000011007.82453.067501569.156100.644503.298901.53010K562XRCC6
TCEB3ENSG00000011007.82482.406903564.17490-0.521803.130902.20590K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TCEB3 is not available on ENCORE database.





1 RBPs can affect the splicing of TCEB3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTCEB3ENSG00000011007.8chr1+2408342424083615240834422408361524082715240828750.090000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TCEB3 is not avaliable on ENCORE database.