LRRC23

General Information

Gene Name       : LRRC23
Gene ID             : ENSG00000010626.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRC23)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRC23ENSG00000010626.143.293.663.48ENCSR000AEF
HepG2LRRC23ENSG00000010626.144.754.794.77ENCSR985KAT
K562LRRC23ENSG00000010626.143.193.573.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRC23 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRC23 RNA is bound by 2 proteins.  







eCLIP assay for LRRC23 is not avaliable on ENCORE database.





2 proteins are bound to LRRC23 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1270231587023294+3'-UTR,CDS,intron-Distal4.000993.26022HepG2PRPF4
chr1270232207023375+3'-UTR,CDS,intron-Distal3.288083.76326HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRC23 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRC23 is not available on ENCORE database.

  • 32 RBPs can affect the levels of LRRC23.  








The Knockdown/knockout RNA-Seq assay for LRRC23 is not available on ENCORE database.





32 RBPs can affect the gene expression of LRRC23 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRC23ENSG00000010626.1046.0699083.31510-0.854802.535701.94910HepG2ACO1
LRRC23ENSG00000010626.1074.69760124.51410-0.737202.246401.53500HepG2ASCC1
LRRC23ENSG00000010626.1072.98850129.86620-0.831301.905601.31640HepG2AUH
LRRC23ENSG00000010626.10149.9421090.301600.731502.665601.99860HepG2DDX21
LRRC23ENSG00000010626.1064.85750144.15540-1.152304.784903.97990HepG2DDX3X
LRRC23ENSG00000010626.1028.7886068.94690-1.260002.714201.74680HepG2DDX59
LRRC23ENSG00000010626.1031.7546072.59980-1.193003.209902.12770HepG2DDX5
LRRC23ENSG00000010626.1071.58230119.50930-0.739402.279001.53500HepG2EIF4G2
LRRC23ENSG00000010626.1021.2895060.82640-1.514602.316501.39360HepG2FTO
LRRC23ENSG00000010626.1051.03010117.44930-1.202602.682901.71520HepG2IGF2BP3
LRRC23ENSG00000010626.10196.56110119.697400.715503.317102.67320HepG2PUF60
LRRC23ENSG00000010626.1085.27740127.06610-0.575301.906401.39400HepG2PUM1
LRRC23ENSG00000010626.1043.7956096.50370-1.139802.814602.10390HepG2RAVER1
LRRC23ENSG00000010626.1047.41500126.60260-1.416906.469605.47930HepG2RBM25
LRRC23ENSG00000010626.1058.67750139.97300-1.254305.928705.30160HepG2SRSF1
LRRC23ENSG00000010626.1047.0807082.70650-0.812902.082201.46890HepG2SRSF7
LRRC23ENSG00000010626.1077.81310134.40820-0.788503.221702.56100HepG2SUCLG1
LRRC23ENSG00000010626.10121.4696075.112400.693402.044701.60150HepG2TIAL1
LRRC23ENSG00000010626.1019.8453088.11050-2.150507.697906.65360HepG2U2AF1
LRRC23ENSG00000010626.1019.8717086.80950-2.127104.459903.19400HepG2U2AF2
LRRC23ENSG00000010626.10109.1323058.578500.897502.420201.73870HepG2XRN2
LRRC23ENSG00000010626.10107.9066053.043301.024403.201002.26170K562BOP1
LRRC23ENSG00000010626.1033.95170100.42450-1.564606.487405.61710K562FXR1
LRRC23ENSG00000010626.10154.6817077.004601.006204.104303.18640K562GRSF1
LRRC23ENSG00000010626.10171.4041085.757700.999004.632203.60850K562HSPD1
LRRC23ENSG00000010626.1045.7689088.52690-0.951702.643601.68700K562PCBP2
LRRC23ENSG00000010626.10116.9935071.822700.703802.280501.53640K562PPIG
LRRC23ENSG00000010626.1021.1279057.94510-1.455503.216602.40700K562PRPF8
LRRC23ENSG00000010626.10213.07670137.525700.631602.642501.70390K562PUM2
LRRC23ENSG00000010626.1029.7479094.76830-1.671606.563405.48550K562SRSF1
LRRC23ENSG00000010626.1029.2783068.65190-1.229503.286402.39210K562SYNCRIP
LRRC23ENSG00000010626.10174.97420103.650600.755303.696302.87570K562UPF1
LRRC23ENSG00000010626.10140.5470088.689900.664102.434501.61130K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRC23 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LRRC23 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LRRC23 is not avaliable on ENCORE database.