UBR7

General Information

Gene Name       : UBR7
Gene ID             : ENSG00000012963.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBR7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBR7ENSG00000012963.1437.2332.1834.70ENCSR000AEF
HepG2UBR7ENSG00000012963.1416.0621.0718.56ENCSR985KAT
K562UBR7ENSG00000012963.1428.2129.4828.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
UBR7Ribo-STAMP-293TshRNAUBR7-BGRSLV04-61,UBR7-BGRSLV04-62NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBR7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBR7 RNA is bound by 6 proteins.  







eCLIP assay for UBR7 is not avaliable on ENCORE database.





6 proteins are bound to UBR7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149369406993694146+3'-UTR5.7464211.97438K562UPF1
chr149369453893694591+3'-UTR4.669638.61496K562PUM2
chr149369367493693765+3'-UTR5.177216.73016HepG2SUB1
chr149369410593694150+3'-UTR3.560385.33418K562FAM120A
chr149369415093694227+3'-UTR5.4167115.14095K562FAM120A
chr149369433893694462+3'-UTR4.8106326.40795K562UPF1
chr149369434193694485+3'-UTR4.1830232.07157K562FAM120A
chr149369480093694840+3'-UTR3.657575.75623K562FAM120A
chr149369449693694538+3'-UTR4.974067.80881K562PUM2
chr149369379693693879+3'-UTR4.1855310.26427K562FAM120A
chr149369389093693970+3'-UTR4.5647010.12270K562FAM120A
chr149369398793694022+3'-UTR4.263447.89398K562FAM120A
chr149369473093694827+3'-UTR5.4880216.57890K562PUM2
chr149369414693694207+3'-UTR5.6226610.90122K562UPF1
chr149369516293695217+3'-UTR5.7030811.48502K562FAM120A
chr149369381993693892+3'-UTR3.612257.87801K562UPF1
chr149368557793685694+3'-UTR,CDS,intron-Distal3.159623.87559K562YBX3
chr149367367993673741+5'-UTR,CDS,intron-Distal4.115579.77030K562DDX3X
chr149367361793673679+5'-UTR,CDS,intron-Distal4.627288.45138K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBR7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBR7 is not available on ENCORE database.

  • 102 RBPs can affect the levels of UBR7.  








The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.





102 RBPs can affect the gene expression of UBR7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBR7ENSG00000012963.9546.68760678.17630-0.310902.447001.72090HepG2AKAP8L
UBR7ENSG00000012963.9319.32150624.97060-0.968809.578908.17650HepG2ASCC1
UBR7ENSG00000012963.9563.11260870.23120-0.628008.823707.71120HepG2AUH
UBR7ENSG00000012963.9458.40570703.85740-0.618703.653002.57780HepG2BCCIP
UBR7ENSG00000012963.9415.10600611.65380-0.559203.160202.19760HepG2BCLAF1
UBR7ENSG00000012963.9289.12160638.18790-1.1423014.4477013.23080HepG2BOP1
UBR7ENSG00000012963.9648.93100922.62130-0.507703.083102.05120HepG2CCAR1
UBR7ENSG00000012963.9417.77260593.75970-0.507203.173502.34710HepG2CIRBP
UBR7ENSG00000012963.9467.53930674.85870-0.529506.490905.55030HepG2CKAP4
UBR7ENSG00000012963.9355.62080585.88790-0.720305.950704.97680HepG2CPSF6
UBR7ENSG00000012963.9403.53810562.21340-0.478403.533002.28780HepG2CPSF7
UBR7ENSG00000012963.9667.70790870.65570-0.382903.679602.95900HepG2CELF1
UBR7ENSG00000012963.9678.18650534.477300.343502.607801.48450HepG2DDX1
UBR7ENSG00000012963.9388.18500621.47220-0.678904.680503.89530HepG2DDX6
UBR7ENSG00000012963.9424.35820524.09300-0.304501.933301.33410HepG2DNAJC21
UBR7ENSG00000012963.9409.26980519.42920-0.343902.799102.14380HepG2DNAJC2
UBR7ENSG00000012963.9450.12940596.30390-0.405702.230201.40080HepG2EEF2
UBR7ENSG00000012963.9389.59330551.68740-0.501902.724201.62800HepG2AGO1
UBR7ENSG00000012963.9339.53730597.51950-0.815406.903005.99480HepG2EIF2S1
UBR7ENSG00000012963.9315.17820484.05710-0.619003.516702.50470HepG2EIF3D
UBR7ENSG00000012963.9886.31310660.369600.424402.573301.95620HepG2EIF4A3
UBR7ENSG00000012963.9182.25280642.88560-1.8186020.9614019.18990HepG2EIF4B
UBR7ENSG00000012963.9772.34630923.58690-0.258002.136801.38530HepG2EIF4G1
UBR7ENSG00000012963.9726.13870999.14330-0.460405.696304.88580HepG2ETF1
UBR7ENSG00000012963.9285.25320586.89900-1.040904.563403.26770HepG2FTO
UBR7ENSG00000012963.9396.42920618.02830-0.640604.601003.75180HepG2G3BP1
UBR7ENSG00000012963.9333.45070664.14060-0.994009.683908.53520HepG2GPKOW
UBR7ENSG00000012963.9159.16770278.91810-0.809303.934502.60670HepG2GRSF1
UBR7ENSG00000012963.9510.58010644.43600-0.335902.787601.80750HepG2HDGF
UBR7ENSG00000012963.9365.69630529.11350-0.532903.581402.85860HepG2HNRNPA1
UBR7ENSG00000012963.9522.78560723.68620-0.469104.633503.73500HepG2HNRNPF
UBR7ENSG00000012963.9378.15370625.66000-0.726406.199105.18380HepG2HNRNPK
UBR7ENSG00000012963.9687.78730852.76990-0.310202.958102.26300HepG2HNRNPL
UBR7ENSG00000012963.9254.92210633.80240-1.3140016.2976014.94560HepG2HNRNPLL
UBR7ENSG00000012963.9360.59680475.64380-0.399502.499201.59220HepG2HNRNPM
UBR7ENSG00000012963.9534.66390712.62970-0.414503.122402.35710HepG2IGF2BP1
UBR7ENSG00000012963.9317.64720628.23510-0.983909.905808.71420HepG2IGF2BP2
UBR7ENSG00000012963.9432.17420597.19140-0.466605.244804.26220HepG2ILF2
UBR7ENSG00000012963.9419.19990617.03880-0.557706.735105.18560HepG2KIF1C
UBR7ENSG00000012963.9578.89210973.74990-0.750306.188404.93760HepG2LARP4
UBR7ENSG00000012963.9503.57720670.14500-0.412302.132801.57470HepG2MATR3
UBR7ENSG00000012963.9399.99610646.41580-0.692504.006902.82930HepG2MTPAP
UBR7ENSG00000012963.9355.49620561.99360-0.660704.789403.81520HepG2NSUN2
UBR7ENSG00000012963.9416.12910610.95440-0.554003.688502.86270HepG2PABPC4
UBR7ENSG00000012963.9457.23050566.95200-0.310302.264201.70480HepG2PCBP1
UBR7ENSG00000012963.9322.72700533.98930-0.726504.885003.84510HepG2PRPF8
UBR7ENSG00000012963.9577.63250886.14220-0.617406.475705.61540HepG2PUF60
UBR7ENSG00000012963.9596.77820939.99270-0.655508.238707.10790HepG2PUM2
UBR7ENSG00000012963.9423.02330835.09860-0.9812016.3474015.29980HepG2RBM22
UBR7ENSG00000012963.9539.39240746.80140-0.469403.144202.08350HepG2RBM27
UBR7ENSG00000012963.9472.65370779.50650-0.721807.487606.44500HepG2RPLP0
UBR7ENSG00000012963.9312.37090471.01930-0.592504.447803.68730HepG2RPS19
UBR7ENSG00000012963.9308.45050528.24170-0.776205.093804.06120HepG2RRP9
UBR7ENSG00000012963.9173.19600284.93010-0.718203.651102.15460HepG2SART3
UBR7ENSG00000012963.9411.59540627.33400-0.608004.840003.92910HepG2SF3B1
UBR7ENSG00000012963.9661.59690849.67650-0.361003.838303.03290HepG2SLBP
UBR7ENSG00000012963.9469.74360678.98110-0.531503.055602.04530HepG2SMNDC1
UBR7ENSG00000012963.9421.68090698.02090-0.727104.258903.28240HepG2SNRNP70
UBR7ENSG00000012963.9502.53950943.21260-0.9083018.1844017.19920HepG2SRFBP1
UBR7ENSG00000012963.9876.92850626.920600.484105.394404.78950HepG2SRSF1
UBR7ENSG00000012963.9496.92300675.02830-0.441902.283301.38370HepG2SRSF3
UBR7ENSG00000012963.9677.02050874.93880-0.370003.723703.01820HepG2SRSF5
UBR7ENSG00000012963.9461.26920710.97910-0.624203.333602.57930HepG2SRSF7
UBR7ENSG00000012963.9411.52980510.01790-0.309602.226801.72010HepG2SRSF9
UBR7ENSG00000012963.9289.93230423.54730-0.546802.996901.66390HepG2SSRP1
UBR7ENSG00000012963.9306.30680465.47300-0.603704.923803.68980HepG2SUPT6H
UBR7ENSG00000012963.9224.57650688.93030-1.6172020.4411018.90580HepG2SUPV3L1
UBR7ENSG00000012963.9718.09170563.451000.349802.608702.06290HepG2TAF15
UBR7ENSG00000012963.9367.85440617.78510-0.748006.731105.66690HepG2TARDBP
UBR7ENSG00000012963.9261.32370461.79420-0.821405.366704.04500HepG2TFIP11
UBR7ENSG00000012963.9456.68660568.13060-0.315001.948601.51360HepG2TIAL1
UBR7ENSG00000012963.9440.08440668.75870-0.603703.380901.76590HepG2TRA2A
UBR7ENSG00000012963.9343.95120573.16140-0.736709.533808.58280HepG2TRIM56
UBR7ENSG00000012963.9700.29160865.72680-0.306002.047301.30670HepG2TUFM
UBR7ENSG00000012963.9541.15290916.36040-0.759906.615305.28950HepG2UBE2L3
UBR7ENSG00000012963.9253.25020407.00420-0.684504.323603.37330HepG2UCHL5
UBR7ENSG00000012963.9511.56150645.01430-0.334402.765102.06530HepG2UPF1
UBR7ENSG00000012963.9434.75830630.97200-0.537402.373201.44950HepG2UPF2
UBR7ENSG00000012963.9478.39720678.17490-0.503402.801802.07310HepG2XRN2
UBR7ENSG00000012963.9718.06810522.911800.457505.104004.23960HepG2ZC3H8
UBR7ENSG00000012963.9353.39090709.39220-1.0053020.3500019.20430HepG2ZNF622
UBR7ENSG00000012963.91663.221302112.28320-0.344801.955401.44610K562AQR
UBR7ENSG00000012963.9592.563601073.89070-0.8578010.537308.78110K562BOP1
UBR7ENSG00000012963.91247.638401844.91880-0.564403.154702.00990K562CNOT7
UBR7ENSG00000012963.9804.797601141.88790-0.504705.490204.39190K562CPSF6
UBR7ENSG00000012963.9720.37140900.68540-0.322302.464601.47490K562CSTF2
UBR7ENSG00000012963.91059.587301332.19890-0.330303.599202.21560K562DDX21
UBR7ENSG00000012963.91473.759801820.65480-0.305004.031803.26470K562DDX47
UBR7ENSG00000012963.9529.55910813.78300-0.619908.110605.99350K562EIF4B
UBR7ENSG00000012963.92130.944402565.27630-0.267602.684401.75800K562EIF4G2
UBR7ENSG00000012963.9864.377101116.89200-0.369803.249601.86310K562EXOSC5
UBR7ENSG00000012963.9680.59640984.68320-0.532904.464203.27780K562FTO
UBR7ENSG00000012963.91228.67940939.771400.386604.435303.69340K562FXR1
UBR7ENSG00000012963.91111.488701383.83640-0.316203.288802.04140K562GLRX3
UBR7ENSG00000012963.9716.059401090.24910-0.606506.664805.43690K562GPKOW
UBR7ENSG00000012963.91238.049502150.87130-0.7969014.2637012.51860K562GRSF1
UBR7ENSG00000012963.91056.137201401.74920-0.408404.171102.85430K562HNRNPA1
UBR7ENSG00000012963.9954.181001201.10900-0.332002.577701.99860K562HNRNPC
UBR7ENSG00000012963.91187.677901552.35470-0.386304.603303.44660K562HNRNPU
UBR7ENSG00000012963.9523.15980930.86550-0.831307.095405.53000K562KRR1
UBR7ENSG00000012963.9716.718401064.19330-0.570306.128004.79870K562METAP2
UBR7ENSG00000012963.92033.023202734.39680-0.427602.593501.50240K562MSI2
UBR7ENSG00000012963.9761.823401454.90240-0.9334021.0743019.14590K562MTPAP
UBR7ENSG00000012963.91210.952401616.64580-0.416905.613704.60670K562NSUN2
UBR7ENSG00000012963.9773.761401076.88940-0.476904.201603.05320K562PSIP1
UBR7ENSG00000012963.91516.597901249.635900.279202.349201.73010K562PTBP1
UBR7ENSG00000012963.91343.440201595.04040-0.247702.087101.37230K562SF3A3
UBR7ENSG00000012963.9803.028901036.76660-0.368602.201901.34370K562SF3B1
UBR7ENSG00000012963.9692.75210931.27970-0.426903.277202.13670K562SRFBP1
UBR7ENSG00000012963.9892.208301157.01380-0.375002.897701.81960K562SRSF5
UBR7ENSG00000012963.9620.81240962.97100-0.633305.243103.80520K562SUPV3L1
UBR7ENSG00000012963.91340.662501093.011300.294502.504601.72510K562SYNCRIP
UBR7ENSG00000012963.91011.962401239.82800-0.293001.910301.31520K562TARDBP
UBR7ENSG00000012963.9729.487901035.80540-0.505803.956002.82240K562TIAL1
UBR7ENSG00000012963.9717.916901100.24420-0.615906.746105.12160K562TRIM56
UBR7ENSG00000012963.91315.087601694.38770-0.365602.890901.46640K562TRIP6
UBR7ENSG00000012963.9789.170301019.11500-0.368902.392701.45260K562UCHL5
UBR7ENSG00000012963.91156.826901466.76310-0.342503.193002.25710K562WDR3
UBR7ENSG00000012963.91315.672501525.15820-0.213202.124901.37580K562WDR43
UBR7ENSG00000012963.91667.901002379.84350-0.512804.185703.08660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.





8 RBPs can affect the splicing of UBR7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686768-0.188000.000290.00752excludedK562SF3B4
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686757-0.175000.003950.04395excludedHepG2U2AF2
SEUBR7ENSG00000012963.9chr14+936761699367630393673585936737869367699393677054-0.069000.000640.00839excludedK562AQR
SEUBR7ENSG00000012963.9chr14+936885739368872093686594936867579369328893693464-0.069000.002200.02379excludedK562AQR
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686768-0.107000.002050.03067excludedK562PUS1
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686768-0.289000.000000.00000excludedK562U2AF1
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686757-0.409000.000000.00000excludedK562U2AF2
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686757-0.129000.000420.01394excludedK562RBM15
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686757-0.137000.000540.01681excludedK562AGGF1
SEUBR7ENSG00000012963.9chr14+936855579368570793684872936850819368659493686757-0.164000.000060.00501excludedK562HNRNPK
MXEUBR7ENSG00000012963.9chr14+93676993936770549367837793678473936735879367378693681274936813280.429000.000000.000001includedK562AQR
MXEUBR7ENSG00000012963.9chr14+93686594936867579368865893688720936812749368132893693288936955610.059000.002180.017951includedK562AQR
MXEUBR7ENSG00000012963.9chr14+93686594936867579368865893688720936850269368508193693288936935710.270000.000000.000021includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBR7 is not avaliable on ENCORE database.