HIPK3

General Information

Gene Name       : HIPK3
Gene ID             : ENSG00000110422.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HIPK3)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HIPK3ENSG00000110422.1111.979.8710.92ENCSR000AEF
HepG2HIPK3ENSG00000110422.117.7513.0510.40ENCSR985KAT
K562HIPK3ENSG00000110422.114.594.774.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HIPK3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • HIPK3 RNA is bound by 24 proteins.  







eCLIP assay for HIPK3 is not avaliable on ENCORE database.





24 proteins are bound to HIPK3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr113330794933308003+3'-UTR,5'-UTR,CDS,intron-Proximal4.3926412.45794HepG2U2AF2
chr113337626733376336+3'-UTR4.3732114.46181HepG2FUBP3
chr113337639733376446+3'-UTR4.636856.51368HepG2TIA1
chr113330794833308005+3'-UTR,5'-UTR,CDS,intron-Proximal3.7634012.21819K562U2AF2
chr113337805533378152+3'-UTR3.705348.05918HepG2FUBP3
chr113337577433375840+3'-UTR5.573489.77446HepG2FUBP3
chr113337675033376821+3'-UTR4.7281013.94347HepG2FUBP3
chr113337639433376443+3'-UTR4.9820410.24889HepG2FUBP3
chr113330794933308001+3'-UTR,5'-UTR,CDS,intron-Proximal4.7933213.85214K562U2AF1
chr113337682133376891+3'-UTR4.5550911.12858HepG2FUBP3
chr113328021533280288+5'-UTR,intron-Distal,intron-Proximal3.139713.14365K562NONO
chr113327924633279347+5'-UTR,intron-Distal4.0372410.46094HepG2DDX3X
chr113327927533279406+5'-UTR,intron-Distal3.737683.09172K562XRCC6
chr113327943333279493+5'-UTR,intron-Distal,intron-Proximal4.699634.65563K562AQR
chr113328020033280229+5'-UTR,intron-Distal3.834683.07980HepG2HNRNPM
chr113328019933280242+5'-UTR,intron-Distal,intron-Proximal4.083674.00551K562DROSHA
chr113336104633361086+CDS,intron-Proximal4.554103.45943HepG2BCLAF1
chr113330823633308303+CDS3.705604.54534K562IGF2BP2
chr113337498533375084+CDS3.863777.09011HepG2IGF2BP1
chr113330796033308088+CDS4.019448.11182K562IGF2BP1
chr113330830333308366+CDS4.603295.69717K562IGF2BP2
chr113337497533375097+CDS5.153449.41982K562IGF2BP1
chr113337489833374975+CDS3.763495.73713K562IGF2BP1
chr113337023633370354+CDS3.483425.32768K562YBX3
chr113330888933308919+CDS3.129983.24816K562YBX3
chr113330886233308889+CDS3.302493.86052K562YBX3
chr113337477333374900+CDS3.8917610.62121HepG2IGF2BP1
chr113337480433374898+CDS3.571944.29472K562IGF2BP1
chr113330827933308416+CDS3.644955.58683HepG2GRWD1
chr113335006433350175+CDS4.340873.43975HepG2LIN28B
chr113330872033308812+CDS3.253704.96117K562YBX3
chr113330895633309021+CDS4.087083.39858K562IGF2BP2
chr113337066333370727+CDS,intron-Proximal3.367623.16095HepG2U2AF2
chr113329436233294441+intron-Distal6.7106726.47206HepG2PCBP2
chr113329418033294228+intron-Distal5.073034.90095K562PTBP1
chr113327886733278995+intron-Distal3.9849318.84251HepG2DDX3X
chr113329417733294233+intron-Distal3.210993.19404HepG2PTBP1
chr113333358833333677+intron-Distal5.9649213.84486K562AGGF1
chr113329434633294432+intron-Distal3.408793.04847HepG2CSTF2T
chr113329433933294443+intron-Distal3.941806.99640HepG2HNRNPK
chr113333342433333517+intron-Distal3.548223.27276HepG2HNRNPL
chr113333178733331893+intron-Distal3.156203.45713HepG2PTBP1
chr113329437033294462+intron-Distal4.6335212.51917HepG2ILF3
chr113329435033294453+intron-Distal3.693769.31827K562ILF3
chr113329435833294439+intron-Distal5.8332111.75245HepG2DDX59
chr113327899533279069+intron-Distal4.5794511.03866HepG2DDX3X
chr113329414733294239+intron-Distal3.247894.05586HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HIPK3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HIPK3 is not available on ENCORE database.

  • 105 RBPs can affect the levels of HIPK3.  








The Knockdown/knockout RNA-Seq assay for HIPK3 is not available on ENCORE database.





105 RBPs can affect the gene expression of HIPK3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HIPK3ENSG00000110422.71484.173401182.523000.327702.543201.51300HepG2AATF
HIPK3ENSG00000110422.71183.377102310.43890-0.965305.083104.38920HepG2AKAP1
HIPK3ENSG00000110422.71929.615301612.300400.259103.089702.28420HepG2AKAP8L
HIPK3ENSG00000110422.71600.682302154.03600-0.428407.509606.46830HepG2AUH
HIPK3ENSG00000110422.7535.047801383.51120-1.3706017.2458014.74010HepG2BCCIP
HIPK3ENSG00000110422.7632.720901202.29680-0.926209.494507.95980HepG2BCLAF1
HIPK3ENSG00000110422.71307.867101604.43820-0.294903.768103.01470HepG2CKAP4
HIPK3ENSG00000110422.71090.035802187.19870-1.004709.361907.98440HepG2CNOT7
HIPK3ENSG00000110422.72309.954101804.395500.356203.225202.48870HepG2CPSF6
HIPK3ENSG00000110422.71088.929101497.45800-0.459604.118302.87210HepG2YBX3
HIPK3ENSG00000110422.72502.990701759.019300.508809.712608.64820HepG2CELF1
HIPK3ENSG00000110422.72261.858601891.593300.257803.600702.77510HepG2DAZAP1
HIPK3ENSG00000110422.71609.729001305.096800.302602.299601.67390HepG2DDX21
HIPK3ENSG00000110422.71679.510301276.793300.395404.100502.97740HepG2DDX24
HIPK3ENSG00000110422.73294.130302213.476500.573505.257604.41850HepG2DDX3X
HIPK3ENSG00000110422.72896.228102049.015400.499102.424901.50960HepG2DDX59
HIPK3ENSG00000110422.71062.088901470.48370-0.469406.787005.72390HepG2DNAJC21
HIPK3ENSG00000110422.71064.582301457.36500-0.453108.695007.61640HepG2DNAJC2
HIPK3ENSG00000110422.71697.444501201.512400.498403.101001.92070HepG2AGO1
HIPK3ENSG00000110422.72962.395601966.533200.591003.438202.67430HepG2EIF4B
HIPK3ENSG00000110422.72238.912301865.987100.262803.059802.18780HepG2EIF4G1
HIPK3ENSG00000110422.71705.539701051.110400.698209.361207.96320HepG2FUBP3
HIPK3ENSG00000110422.7761.83070986.82660-0.373302.491301.64650HepG2GEMIN5
HIPK3ENSG00000110422.71715.418201402.953200.290002.207101.30240HepG2GNB2L1
HIPK3ENSG00000110422.72199.467701738.324400.339404.230903.11540HepG2HNRNPA2B1
HIPK3ENSG00000110422.71412.456301723.16220-0.286904.616703.76330HepG2HNRNPL
HIPK3ENSG00000110422.71523.946302162.87940-0.505103.529102.13800HepG2HSPD1
HIPK3ENSG00000110422.71238.722301515.03290-0.290502.366501.69430HepG2IGF2BP1
HIPK3ENSG00000110422.71378.386501675.57200-0.281703.383202.57880HepG2ILF2
HIPK3ENSG00000110422.71865.721902649.73110-0.506103.554502.61260HepG2LARP4
HIPK3ENSG00000110422.71108.296001443.28790-0.381002.782701.56500HepG2LIN28B
HIPK3ENSG00000110422.71219.819102049.82500-0.748803.555802.84840HepG2MATR3
HIPK3ENSG00000110422.71915.156101523.793200.329703.203702.33540HepG2MSI2
HIPK3ENSG00000110422.71143.338901875.68850-0.7142014.6437012.95200HepG2NOL12
HIPK3ENSG00000110422.7841.083301319.02860-0.649204.914202.71740HepG2PHF6
HIPK3ENSG00000110422.71546.022801280.435600.271802.880202.09390HepG2PRPF4
HIPK3ENSG00000110422.71308.312701049.669500.317702.392101.63920HepG2PRPF8
HIPK3ENSG00000110422.71380.575601900.57050-0.4612010.893909.88070HepG2PUM1
HIPK3ENSG00000110422.71360.722301899.22580-0.481006.914005.87230HepG2PUM2
HIPK3ENSG00000110422.73827.830901543.264001.3104014.1223012.64160HepG2RAVER1
HIPK3ENSG00000110422.72518.249001841.665300.451305.747304.80770HepG2RBM25
HIPK3ENSG00000110422.71677.858801038.377500.692207.718606.48930HepG2RRP9
HIPK3ENSG00000110422.72692.301201988.363800.437202.458601.82340HepG2SF3A3
HIPK3ENSG00000110422.71443.527901950.73080-0.434407.336906.44850HepG2SF3B4
HIPK3ENSG00000110422.71173.874401716.61740-0.5483013.0100011.68320HepG2SLBP
HIPK3ENSG00000110422.71088.163601572.34820-0.531003.656202.54190HepG2SMNDC1
HIPK3ENSG00000110422.73170.838402149.872300.560503.805502.88360HepG2SNRNP70
HIPK3ENSG00000110422.72435.220002036.152700.258103.493502.97820HepG2SRSF1
HIPK3ENSG00000110422.73118.530702078.917100.584905.134203.73300HepG2SRSF3
HIPK3ENSG00000110422.72063.702801656.529000.317004.876904.18290HepG2SRSF9
HIPK3ENSG00000110422.7569.926401257.59140-1.1418012.8313010.43960HepG2STAU1
HIPK3ENSG00000110422.72150.196901442.156400.576103.887502.45180HepG2SUB1
HIPK3ENSG00000110422.71019.025601271.34470-0.319202.426301.54180HepG2SUPT6H
HIPK3ENSG00000110422.71801.982101354.177000.412103.453402.70800HepG2SUPV3L1
HIPK3ENSG00000110422.72418.351001830.206800.401905.980005.20850HepG2TAF15
HIPK3ENSG00000110422.71324.261201594.07430-0.267502.423001.94940HepG2TIAL1
HIPK3ENSG00000110422.71127.652801608.14530-0.512109.558608.60700HepG2TRIM56
HIPK3ENSG00000110422.72295.179901749.078200.391904.278103.16260HepG2TUFM
HIPK3ENSG00000110422.73639.443301610.458701.1761027.5209025.47640HepG2U2AF1
HIPK3ENSG00000110422.72162.757201763.375200.294404.367103.52280HepG2UPF1
HIPK3ENSG00000110422.7650.846001240.30030-0.930304.710303.38390HepG2UPF2
HIPK3ENSG00000110422.71942.140501702.468600.189901.982901.45830HepG2UTP3
HIPK3ENSG00000110422.7612.986801333.03540-1.1208012.1467010.65100HepG2XRN2
HIPK3ENSG00000110422.71015.963301263.62760-0.314704.024403.23860HepG2ZC3H8
HIPK3ENSG00000110422.72781.370801939.374400.5201016.1834015.13440HepG2ZNF622
HIPK3ENSG00000110422.7682.74210511.481900.416602.878701.67140K562AARS
HIPK3ENSG00000110422.71522.983601159.017500.393903.257001.91460K562ABCF1
HIPK3ENSG00000110422.71235.96630887.726500.477407.319506.46110K562AGGF1
HIPK3ENSG00000110422.71244.88310923.737500.430404.185503.37940K562AKAP8L
HIPK3ENSG00000110422.72300.35690947.399501.2797029.3255027.62150K562AQR
HIPK3ENSG00000110422.7419.36930653.35710-0.639706.869204.68420K562BCCIP
HIPK3ENSG00000110422.7467.60680631.29030-0.433003.758802.63150K562BCLAF1
HIPK3ENSG00000110422.71422.85390816.372600.8014010.330608.59610K562BOP1
HIPK3ENSG00000110422.71076.82220807.319200.415502.827201.39290K562BUD13
HIPK3ENSG00000110422.7800.250701069.60990-0.418604.725103.25140K562CPEB4
HIPK3ENSG00000110422.71106.96980867.975900.350802.867502.07110K562CPSF6
HIPK3ENSG00000110422.72551.458901567.393300.7029014.3675012.27410K562CELF1
HIPK3ENSG00000110422.7608.15690326.030700.899305.880203.27350K562DDX1
HIPK3ENSG00000110422.71076.11750657.916900.709809.522707.47850K562DDX3X
HIPK3ENSG00000110422.7481.55570346.339400.475402.883301.52560K562DHX30
HIPK3ENSG00000110422.7745.20950534.788500.478602.517101.30470K562EEF2
HIPK3ENSG00000110422.7692.77140516.645600.423102.585001.70580K562EFTUD2
HIPK3ENSG00000110422.7605.41810337.678000.842204.148701.68830K562EIF4G1
HIPK3ENSG00000110422.71689.875401274.850900.406505.684204.35970K562EIF4G2
HIPK3ENSG00000110422.7522.46760833.15720-0.673206.922305.52790K562FIP1L1
HIPK3ENSG00000110422.7778.69330485.798500.680605.992004.22050K562FKBP4
HIPK3ENSG00000110422.71502.90430883.265600.7667010.205908.51070K562FMR1
HIPK3ENSG00000110422.71170.21550748.699700.644205.788204.41210K562FTO
HIPK3ENSG00000110422.7671.92000994.76380-0.566105.832104.72970K562GRSF1
HIPK3ENSG00000110422.71377.83150835.038000.722404.320602.07180K562HNRNPA0
HIPK3ENSG00000110422.71288.59220721.440600.836704.150402.56710K562HNRNPA2B1
HIPK3ENSG00000110422.7908.91750715.214200.345702.965602.04110K562HNRNPU
HIPK3ENSG00000110422.7717.516001129.57230-0.654707.299006.02330K562HSPD1
HIPK3ENSG00000110422.71290.98770849.903800.603003.043301.54620K562ILF2
HIPK3ENSG00000110422.7493.49900323.220000.610404.239602.38830K562ILF3
HIPK3ENSG00000110422.7453.05420312.317400.536603.392001.74190K562KHDRBS1
HIPK3ENSG00000110422.71371.48800980.253800.484405.404504.17060K562KIF1C
HIPK3ENSG00000110422.7682.34420906.85600-0.410403.494502.44160K562MATR3
HIPK3ENSG00000110422.71455.559801098.140600.406404.289503.11400K562MBNL1
HIPK3ENSG00000110422.71776.759201358.885600.386703.644602.34740K562MSI2
HIPK3ENSG00000110422.71281.96370769.722500.735802.322701.53130K562NAA15
HIPK3ENSG00000110422.7975.40380686.353200.506904.088302.57690K562NCBP2
HIPK3ENSG00000110422.7968.48200828.150600.225701.998001.35150K562NSUN2
HIPK3ENSG00000110422.71509.34910893.778100.755805.360403.62710K562PABPC1
HIPK3ENSG00000110422.7392.49510546.49150-0.477503.157501.61680K562PHF6
HIPK3ENSG00000110422.71504.94430828.044000.861807.575704.55100K562PPIL4
HIPK3ENSG00000110422.7737.50160502.758400.552704.002103.09980K562PRPF8
HIPK3ENSG00000110422.72514.952001390.975800.8543015.5079013.55600K562PUF60
HIPK3ENSG00000110422.71797.10120915.966600.9722017.3360016.01730K562PUS1
HIPK3ENSG00000110422.71101.65610681.038100.693803.342801.75390K562RAVER1
HIPK3ENSG00000110422.71348.95650892.577100.595706.889505.98150K562RBM15
HIPK3ENSG00000110422.71299.36980830.214500.646204.060902.11910K562RPS3A
HIPK3ENSG00000110422.7823.19310513.962900.679504.562302.84100K562RRP9
HIPK3ENSG00000110422.71383.14100817.086800.759307.841806.52610K562SF3A3
HIPK3ENSG00000110422.71061.29250788.260600.429002.772701.79790K562SF3B1
HIPK3ENSG00000110422.7569.20840742.04370-0.382503.150402.23720K562SF3B4
HIPK3ENSG00000110422.71345.44330870.996700.627204.099201.95640K562SMN1
HIPK3ENSG00000110422.71203.54380662.669300.860802.689001.48360K562SNRNP200
HIPK3ENSG00000110422.7982.16870486.636301.0130011.983609.83830K562SUPV3L1
HIPK3ENSG00000110422.7655.64340875.92220-0.417903.014202.27560K562TARDBP
HIPK3ENSG00000110422.7635.42150829.01470-0.383702.766401.67520K562TRA2A
HIPK3ENSG00000110422.7995.18830714.447900.478005.065303.98340K562U2AF2
HIPK3ENSG00000110422.71246.21850840.280700.568504.751703.17360K562UTP3
HIPK3ENSG00000110422.7993.46770781.286900.346503.865402.87650K562WDR43
HIPK3ENSG00000110422.71370.96040779.765500.814003.672301.73580K562YTHDC2
HIPK3ENSG00000110422.71361.807901067.225900.351602.931202.04000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HIPK3 is not available on ENCORE database.





13 RBPs can affect the splicing of HIPK3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHIPK3ENSG00000110422.7chr11+3336971133369774333693973336955933370067333703640.294000.000350.03549includedHepG2G3BP1
SEHIPK3ENSG00000110422.7chr11+3336971133369774333693973336955933370067333703640.384000.000030.00127includedHepG2HNRNPK
SEHIPK3ENSG00000110422.7chr11+333697113336977433369397333695593337006733370364-0.099000.006750.07795excludedK562PUS1
SEHIPK3ENSG00000110422.7chr11+333586203335874033350055333501793336030233360389-0.316000.000070.00185excludedK562PUS1
SEHIPK3ENSG00000110422.7chr11+333697113336977433369397333695593337006733370364-0.154000.002030.04450excludedHepG2SRSF1
SEHIPK3ENSG00000110422.7chr11+333079583330905733279132332794353335005533350179-0.325000.000020.00126excludedHepG2SF3A3
SEHIPK3ENSG00000110422.7chr11+333586203335874033350055333501793336030233360389-0.273000.000270.01255excludedK562UTP18
SEHIPK3ENSG00000110422.7chr11+3336971133369774333693973336955933370067333703640.275000.001120.04108includedK562HNRNPU
SEHIPK3ENSG00000110422.7chr11+333586203335874033350055333501793336030233360389-0.279000.003400.06990excludedK562AGGF1
SEHIPK3ENSG00000110422.7chr11+3336971133369774333693973336955933370067333703640.340000.000170.04463includedHepG2EIF3D
MXEHIPK3ENSG00000110422.7chr11+33369711333697743337006733370364333693973336955933370692333708330.247000.001830.052971includedK562PTBP1
MXEHIPK3ENSG00000110422.7chr11+3336971133369774333700673337036433369397333695593337069233370833-0.110000.004200.069012includedHepG2SRSF1
MXEHIPK3ENSG00000110422.7chr11+3336971133369774333700673337036433369397333695593337069233370833-0.170000.004520.076142includedHepG2DDX55
MXEHIPK3ENSG00000110422.7chr11+3336971133369774333700673337036433369397333695593337069233370833-0.164000.000880.073312includedHepG2SSB
MXEHIPK3ENSG00000110422.7chr11+3336971133369774333700673337036433369397333695593337069233370833-0.245000.000050.009162includedHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HIPK3 is not avaliable on ENCORE database.