PRKDC

General Information

Gene Name : PRKDC
Gene ID : ENSG00000253729.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRKDC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRKDC	ENSG00000253729.7	105.31	100.49	102.90	ENCSR000AEF
HepG2	PRKDC	ENSG00000253729.7	131.49	123.73	127.61	ENCSR985KAT
K562	PRKDC	ENSG00000253729.7	140.78	151.94	146.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRKDC is not avaliable on ENCORE database.

Proteins bound to RNA

PRKDC RNA is bound by 58 proteins.

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eCLIP assay for PRKDC is not avaliable on ENCORE database.

58 proteins are bound to PRKDC RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	48701538	48701611	-	CDS,intron-Distal,intron-Proximal	5.95794	400.00000	K562	PUM2
chr8	48685787	48685828	-	3'-UTR,intron-Distal	3.93559	75.92812	K562	PUM2
chr8	48748984	48749038	-	CDS,intron-Distal	5.98273	75.57618	K562	FXR2
chr8	48685828	48685853	-	3'-UTR,intron-Distal	3.73813	68.46889	K562	PUM2
chr8	48771438	48771503	-	CDS,intron-Distal	7.22245	65.44609	K562	LIN28B
chr8	48872634	48872665	-	CDS,intron-Distal	7.17039	63.99367	K562	FXR2
chr8	48872607	48872634	-	CDS,intron-Distal	5.55696	62.21502	HepG2	DDX3X
chr8	48872608	48872634	-	CDS,intron-Distal	6.83254	54.00266	K562	FXR2
chr8	48872632	48872714	-	5'-UTR,CDS,intron-Distal	6.10679	52.04473	K562	FMR1
chr8	48748912	48748984	-	CDS,intron-Distal	6.14042	50.80282	K562	FXR2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 781 entries

eCLIP assay for PRKDC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRKDC is not available on ENCORE database.
168 RBPs can affect the levels of PRKDC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRKDC is not available on ENCORE database.

168 RBPs can affect the gene expression of PRKDC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRKDC	ENSG00000253729.3	3004.87740	11699.55120	-1.96110	98.19390	93.80130	K562	GPKOW
PRKDC	ENSG00000253729.3	8844.41880	30586.01630	-1.79000	95.55110	91.59820	K562	GRSF1
PRKDC	ENSG00000253729.3	2343.38500	6988.63680	-1.57640	81.83160	79.81740	HepG2	TIAL1
PRKDC	ENSG00000253729.3	3707.17740	7346.66280	-0.98680	78.88520	76.01230	HepG2	ILF2
PRKDC	ENSG00000253729.3	4749.60880	8722.85760	-0.87700	66.95340	65.20010	HepG2	ZNF622
PRKDC	ENSG00000253729.3	2004.01660	7588.63430	-1.92090	59.63500	57.11780	HepG2	GPKOW
PRKDC	ENSG00000253729.3	7021.59810	12479.36730	-0.82970	53.50630	52.03010	HepG2	SRFBP1
PRKDC	ENSG00000253729.3	10100.33010	5037.57410	1.00350	51.76190	50.28540	HepG2	SRSF1
PRKDC	ENSG00000253729.3	5924.62120	10834.84300	-0.87090	50.45230	48.93380	HepG2	SSB
PRKDC	ENSG00000253729.3	3636.55440	6390.36560	-0.81330	49.10530	46.63020	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 219 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRKDC is not available on ENCORE database.

39 RBPs can affect the splicing of PRKDC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.19000	0.00000	excluded	K562	FTO
SE	PRKDC	ENSG00000253729.3	chr8	-	48739216	48739422	48736418	48736557	48740728	48740884	-0.11200	0.00002	excluded	K562	SF3B4
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.07800	0.00001	excluded	K562	WDR43
SE	PRKDC	ENSG00000253729.3	chr8	-	48711770	48711951	48710797	48710958	48713353	48713547	-0.06100	0.00001	excluded	K562	AQR
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695180	-0.09200	0.00000	excluded	K562	AQR
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.10300	0.00000	excluded	K562	ABCF1
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.07700	0.00196	excluded	K562	HNRNPA1
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.08800	0.00000	excluded	K562	NSUN2
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	-0.09100	0.00002	excluded	K562	LARP4
SE	PRKDC	ENSG00000253729.3	chr8	-	48694722	48694815	48691564	48691654	48694938	48695159	0.07700	0.00028	included	HepG2	SRSF1

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRKDC

General Information

Functions

Localization

Domains (AlphaFold: PRKDC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRKDC is not avaliable on ENCORE database.

58 proteins are bound to PRKDC RNA:

eCLIP assay for PRKDC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRKDC is not available on ENCORE database.

168 RBPs can affect the gene expression of PRKDC :

The Knockdown/knockout RNA-Seq assay for PRKDC is not available on ENCORE database.

39 RBPs can affect the splicing of PRKDC :

The Knockdown/knockout RNA-Seq assay for PRKDC is not avaliable on ENCORE database.