RAB9A

General Information

Gene Name       : RAB9A
Gene ID             : ENSG00000123595.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB9A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB9AENSG00000123595.743.1131.9837.55ENCSR000AEF
HepG2RAB9AENSG00000123595.77.4413.6310.54ENCSR985KAT
K562RAB9AENSG00000123595.712.6913.8113.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB9A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB9A RNA is bound by 1 proteins.  







eCLIP assay for RAB9A is not avaliable on ENCORE database.





1 proteins are bound to RAB9A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1370724913707327+5'-UTR3.241474.32211K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB9A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB9A is not available on ENCORE database.

  • 42 RBPs can affect the levels of RAB9A.  








The Knockdown/knockout RNA-Seq assay for RAB9A is not available on ENCORE database.





42 RBPs can affect the gene expression of RAB9A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB9AENSG00000123595.5391.37390306.275900.353601.907101.31750HepG2AUH
RAB9AENSG00000123595.5419.79840245.638400.773106.429805.31710HepG2CALR
RAB9AENSG00000123595.5363.00510253.597100.517401.945801.30950HepG2CNOT7
RAB9AENSG00000123595.5435.15340294.153100.564904.190803.43040HepG2CELF1
RAB9AENSG00000123595.5488.69370343.410600.508902.771502.14460HepG2DDX3X
RAB9AENSG00000123595.5189.43070313.36270-0.726203.801803.05780HepG2EIF4A3
RAB9AENSG00000123595.5192.85350316.26860-0.713603.969303.15030HepG2FXR1
RAB9AENSG00000123595.5137.29090203.93430-0.570902.213201.63030HepG2HNRNPA1
RAB9AENSG00000123595.5215.61070297.14810-0.462801.971001.37440HepG2HNRNPK
RAB9AENSG00000123595.5146.69240225.34810-0.619403.362102.69970HepG2HNRNPU
RAB9AENSG00000123595.5208.49440316.37940-0.601603.018202.33370HepG2MAGOH
RAB9AENSG00000123595.5377.80710231.795000.704703.124202.17750HepG2PABPC1
RAB9AENSG00000123595.5256.40340317.84290-0.309901.853401.34710HepG2PUM1
RAB9AENSG00000123595.5566.24820317.629400.834008.571307.41990HepG2PUM2
RAB9AENSG00000123595.5224.43450300.80100-0.422501.966101.42550HepG2QKI
RAB9AENSG00000123595.5439.83700217.983201.012705.581804.60120HepG2RAVER1
RAB9AENSG00000123595.5415.29400299.086500.473502.342401.54610HepG2RBM15
RAB9AENSG00000123595.5529.26530293.909400.848509.515108.68470HepG2RBM22
RAB9AENSG00000123595.5220.10410309.11130-0.489902.510301.99100HepG2NELFE
RAB9AENSG00000123595.5195.50970287.90810-0.558403.120602.47160HepG2RECQL
RAB9AENSG00000123595.5399.72770275.707700.535803.254302.52290HepG2RPLP0
RAB9AENSG00000123595.5210.09290131.118100.680102.277301.55690HepG2RRP9
RAB9AENSG00000123595.5181.94660261.86680-0.525302.286101.64220HepG2SF3B1
RAB9AENSG00000123595.5219.95970289.16700-0.394701.819901.32370HepG2SF3B4
RAB9AENSG00000123595.5651.36850331.960700.9724015.3426014.41450HepG2SRFBP1
RAB9AENSG00000123595.5313.89220245.563500.354101.892101.41980HepG2SRSF9
RAB9AENSG00000123595.5316.32190221.544300.513702.342701.34360HepG2STIP1
RAB9AENSG00000123595.5314.16500171.127300.876404.158103.35410HepG2SUPV3L1
RAB9AENSG00000123595.5187.26110271.31760-0.534902.752902.19390HepG2TAF15
RAB9AENSG00000123595.5275.08760178.091200.627204.122203.32700HepG2ZC3H8
RAB9AENSG00000123595.5365.56770264.332800.467703.356502.77070HepG2ZNF622
RAB9AENSG00000123595.5553.02010360.687500.616506.004905.21990K562AGGF1
RAB9AENSG00000123595.5518.96020375.305900.467502.976402.29800K562AKAP8L
RAB9AENSG00000123595.5680.66530442.175400.622207.562106.55660K562DDX47
RAB9AENSG00000123595.5515.37490403.892500.351602.309001.51890K562DKC1
RAB9AENSG00000123595.5385.41480236.689400.703303.992303.10470K562G3BP2
RAB9AENSG00000123595.5549.36820398.313800.463803.435402.50390K562KIF1C
RAB9AENSG00000123595.5595.90330446.209200.417302.426801.58270K562MBNL1
RAB9AENSG00000123595.5488.15650312.758500.642203.474602.46140K562NAA15
RAB9AENSG00000123595.5731.33060372.242200.9742011.1075010.06880K562PUS1
RAB9AENSG00000123595.5546.72570362.659300.592105.180504.39190K562RBM15
RAB9AENSG00000123595.5213.91810310.33420-0.536802.805902.09420K562TARDBP
RAB9AENSG00000123595.5324.92160237.030900.454902.552701.78070K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB9A is not available on ENCORE database.





9 RBPs can affect the splicing of RAB9A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB9AENSG00000123595.5chrX+1372193213722021137072431370740713726839137286250.263000.003140.05237includedK562SRSF1
SERAB9AENSG00000123595.5chrX+137219321372202113707243137074071372683913728625-0.233000.003100.07360excludedK562AKAP8L
SERAB9AENSG00000123595.5chrX+1372185313722021137072431370740713726839137286250.254000.000110.03627includedK562PUM1
SERAB9AENSG00000123595.5chrX+1372193213722021137072431370740713726839137286250.324000.001720.06010includedK562FXR1
SERAB9AENSG00000123595.5chrX+137219321372202113707243137074071372683913728625-0.296000.000020.00058excludedK562PUS1
SERAB9AENSG00000123595.5chrX+137219321372202113707243137074071372683913728625-0.471000.006030.09328excludedK562U2AF1
SERAB9AENSG00000123595.5chrX+1372193213722021137072431370740713726839137286250.207000.005440.09396includedHepG2SRSF1
SERAB9AENSG00000123595.5chrX+137219321372202113707243137074071372683913728625-0.232000.002940.07542excludedK562UTP18
SERAB9AENSG00000123595.5chrX+137219321372202113707243137074071372683913728625-0.215000.002740.05950excludedK562AGGF1
SERAB9AENSG00000123595.5chrX+1372193213722021137072431370740713726839137286250.308000.000210.05336includedHepG2EIF3D

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB9A is not avaliable on ENCORE database.