RRAGB

General Information

Gene Name       : RRAGB
Gene ID             : ENSG00000083750.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RRAGB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RRAGBENSG00000083750.1212.749.9711.36ENCSR000AEF
HepG2RRAGBENSG00000083750.129.518.198.85ENCSR985KAT
K562RRAGBENSG00000083750.125.424.254.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RRAGB is not avaliable on ENCORE database.



Proteins bound to RNA
  • RRAGB RNA is bound by 10 proteins.  







eCLIP assay for RRAGB is not avaliable on ENCORE database.





10 proteins are bound to RRAGB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX5578501955785110+3'-UTR3.082493.29213HepG2KHSRP
chrX5578479255784931+3'-UTR4.391654.80438HepG2KHSRP
chrX5574420255744307+5'-UTR,intron-Proximal3.951943.07217HepG2NCBP2
chrX5574854555748640+CDS,intron-Proximal5.481417.91936K562SF3B4
chrX5575785955757968+CDS3.305355.40132HepG2BCLAF1
chrX5574859755748669+CDS,intron-Proximal3.949053.25055K562U2AF2
chrX5574476255744849+CDS,intron-Distal4.241284.94878HepG2GRWD1
chrX5574859655748657+CDS,intron-Proximal4.168543.84661K562U2AF1
chrX5574859255748658+CDS,intron-Proximal4.3035711.12444HepG2U2AF2
chrX5574478455744851+CDS,intron-Distal3.259394.26492HepG2BCLAF1
chrX5577992655780014+CDS,intron-Proximal4.949076.15361K562PRPF8
chrX5575783355757941+CDS3.763476.02304HepG2GRWD1
chrX5577992555780007+CDS,intron-Proximal5.557324.35676HepG2PRPF8
chrX5576019755760294+intron-Distal4.059523.84389HepG2SUGP2
chrX5576830155768397+intron-Distal3.029483.33412HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RRAGB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RRAGB is not available on ENCORE database.

  • 46 RBPs can affect the levels of RRAGB.  








The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.





46 RBPs can affect the gene expression of RRAGB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RRAGBENSG00000083750.8294.07930223.415400.396401.986101.38760HepG2AUH
RRAGBENSG00000083750.8223.2003097.715801.191606.007604.74120HepG2BCLAF1
RRAGBENSG00000083750.8259.69230165.718000.648002.417601.70560HepG2CNOT7
RRAGBENSG00000083750.884.61030231.78590-1.453909.318408.25700HepG2DDX6
RRAGBENSG00000083750.8128.71970222.78970-0.791403.641402.96590HepG2EIF2S1
RRAGBENSG00000083750.8149.66540239.73320-0.679702.544201.88290HepG2EIF4B
RRAGBENSG00000083750.8358.91150256.500200.484602.994202.37270HepG2ETF1
RRAGBENSG00000083750.8270.47000175.537900.623603.476902.53880HepG2EWSR1
RRAGBENSG00000083750.8281.37940189.606800.569402.012801.35080HepG2FIP1L1
RRAGBENSG00000083750.8298.02350156.563200.928603.056501.98850HepG2FTO
RRAGBENSG00000083750.8238.09290124.290000.937705.187604.34150HepG2HNRNPA1
RRAGBENSG00000083750.8205.89060138.248700.574502.163001.54130HepG2HNRNPC
RRAGBENSG00000083750.8202.24370137.334700.558302.679602.08280HepG2HNRNPU
RRAGBENSG00000083750.8145.21240249.91570-0.783303.625202.91150HepG2MATR3
RRAGBENSG00000083750.8211.23300120.082100.814702.633001.60600HepG2METAP2
RRAGBENSG00000083750.8242.91810130.351900.898006.267205.15460HepG2PRPF4
RRAGBENSG00000083750.8138.54540202.65730-0.548702.146401.61220HepG2PUF60
RRAGBENSG00000083750.8309.12270227.650500.441302.069401.51780HepG2QKI
RRAGBENSG00000083750.8556.91060214.388901.3771022.0779020.89730HepG2RBM22
RRAGBENSG00000083750.8178.44880111.651700.676402.675402.06980HepG2RPS19
RRAGBENSG00000083750.8166.0335084.351300.976903.542602.66760HepG2RRP9
RRAGBENSG00000083750.8347.44810242.148300.520803.718203.16360HepG2SRFBP1
RRAGBENSG00000083750.8399.41780228.416600.806106.910106.24510HepG2SRSF1
RRAGBENSG00000083750.8268.86310169.362200.666704.497103.64300HepG2SRSF7
RRAGBENSG00000083750.8115.84690185.82320-0.681703.536702.92980HepG2SRSF9
RRAGBENSG00000083750.8332.81730210.248900.662505.205704.54570HepG2SSB
RRAGBENSG00000083750.8231.97880162.193000.516201.933001.39700HepG2U2AF1
RRAGBENSG00000083750.8110.4071065.020200.763802.249201.56450HepG2UCHL5
RRAGBENSG00000083750.8174.19710100.771900.789502.342801.42560HepG2UPF2
RRAGBENSG00000083750.8171.45390108.361200.661901.915701.30550HepG2XRN2
RRAGBENSG00000083750.8182.12090128.650100.501302.007401.42090HepG2ZC3H8
RRAGBENSG00000083750.8247.69850150.161700.722003.708702.26630K562ABCF1
RRAGBENSG00000083750.8288.75970157.145700.877705.364004.59310K562AQR
RRAGBENSG00000083750.8154.2228093.659000.719402.884201.90480K562BCLAF1
RRAGBENSG00000083750.8195.71410121.499100.687702.248101.30960K562CNOT7
RRAGBENSG00000083750.8361.20660236.267800.612303.780602.63270K562CELF1
RRAGBENSG00000083750.8224.21200158.637000.499002.283101.68210K562DDX47
RRAGBENSG00000083750.8130.3753084.196500.630702.082001.36540K562EIF4A3
RRAGBENSG00000083750.8298.41530192.164500.634904.002802.87580K562EIF4G2
RRAGBENSG00000083750.8231.62720118.357800.968605.401904.19970K562FMR1
RRAGBENSG00000083750.8168.86310100.320500.751102.983202.03290K562FTO
RRAGBENSG00000083750.8249.19270162.020200.621002.876602.10810K562GRSF1
RRAGBENSG00000083750.8150.6661095.890700.651802.576701.53940K562HNRNPA1
RRAGBENSG00000083750.8159.4476068.037001.228605.961305.11830K562HNRNPC
RRAGBENSG00000083750.8197.03970106.206500.891505.184403.94740K562HNRNPU
RRAGBENSG00000083750.8174.41360108.404200.686002.664301.80830K562METAP2
RRAGBENSG00000083750.8180.40940104.960500.781303.811602.87620K562MTPAP
RRAGBENSG00000083750.8222.35010116.726000.929603.827902.35250K562PABPC1
RRAGBENSG00000083750.8140.2880084.042900.739102.906902.04140K562RBM22
RRAGBENSG00000083750.8174.16810115.070400.597902.412301.64660K562SF3A3
RRAGBENSG00000083750.8170.99480105.624400.694902.418601.51460K562SF3B1
RRAGBENSG00000083750.8141.7801072.619500.965102.508501.36020K562SNRNP200
RRAGBENSG00000083750.8187.4729085.907301.125706.448105.38010K562SRSF1
RRAGBENSG00000083750.8174.10400115.683000.589702.715901.56220K562SRSF7
RRAGBENSG00000083750.8171.4568086.949500.979503.942203.09070K562TARDBP
RRAGBENSG00000083750.8163.02460110.029000.567102.357501.57170K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.





12 RBPs can affect the splicing of RRAGB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERRAGBENSG00000083750.8chrX+5577867355778786557775335577762955779824557799470.420000.000030.00503includedHepG2G3BP1
SERRAGBENSG00000083750.8chrX+557786735577883455777533557776295577982455779947-0.415000.001130.06552excludedHepG2RBM22
SERRAGBENSG00000083750.8chrX+5578150055781639557798245577994755782273557823650.457000.000930.07647includedHepG2PRPF8
SERRAGBENSG00000083750.8chrX+557786785577878655777533557776295577982455779947-0.424000.010870.08677excludedK562AQR
SERRAGBENSG00000083750.8chrX+5577867355778834557775335577762955779824557799470.359000.001710.07722includedHepG2PTBP1
SERRAGBENSG00000083750.8chrX+5578150055781639557798245577994755782273557823650.540000.000090.01063includedHepG2HNRNPL
SERRAGBENSG00000083750.8chrX+5577867855778834557775335577762955779824557799470.543000.000280.02422includedHepG2HNRNPL
SERRAGBENSG00000083750.8chrX+5578150055781639557798245577994755782273557823650.487000.000130.03059includedHepG2RBM15
SERRAGBENSG00000083750.8chrX+557815005578163955779824557799475578227355782365-0.300000.000660.07141excludedHepG2SSB
SERRAGBENSG00000083750.8chrX+557786735577883455777533557776295577982455779947-0.500000.000180.02807excludedHepG2SSB
SERRAGBENSG00000083750.8chrX+5577867355778834557775335577762955779824557799470.646000.000980.06674includedHepG2TIAL1
SERRAGBENSG00000083750.8chrX+5577867855778786557775335577762955779824557799470.380000.000940.08380includedHepG2TAF15
SERRAGBENSG00000083750.8chrX+5577867355778834557775335577762955779824557799470.655000.000460.09237includedHepG2EIF3D
SERRAGBENSG00000083750.8chrX+557815005578163955779824557799475578227355782365-0.294000.002990.09713excludedHepG2HNRNPU
A3SSRRAGBENSG00000083750.8chrX+5577865955778786557786785577878655777533557776290.423000.006970.03865longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RRAGB is not avaliable on ENCORE database.