NF1

General Information

Gene Name       : NF1
Gene ID             : ENSG00000196712.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NF1ENSG00000196712.1720.3615.6918.02ENCSR000AEF
HepG2NF1ENSG00000196712.1710.8913.3612.12ENCSR985KAT
K562NF1ENSG00000196712.1717.2620.7218.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NF1 RNA is bound by 45 proteins.  







eCLIP assay for NF1 is not avaliable on ENCORE database.





45 proteins are bound to NF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172955630829556379+3'-UTR,CDS3.303564.25541HepG2GRWD1
chr172966375329663892+3'-UTR,CDS3.304185.15914K562FXR1
chr172956011329560177+3'-UTR,CDS3.365159.03865HepG2BCLAF1
chr172955607229556121+3'-UTR,CDS4.127123.79199HepG2PPIG
chr172966337629663419+3'-UTR,CDS3.523953.12870HepG2YBX3
chr172956013029560207+3'-UTR,CDS5.122347.56505HepG2LIN28B
chr172956011729560198+3'-UTR,CDS5.8327911.88998K562LIN28B
chr172968551129685623+3'-UTR,CDS3.342903.72388HepG2FXR2
chr172953322829533302+3'-UTR,CDS,intron-Proximal4.090474.47532K562U2AF2
chr172955218429552270+3'-UTR,CDS,intron-Proximal3.341626.34055HepG2PPIG
chr172955209829552195+3'-UTR,CDS,intron-Proximal3.2886710.74851HepG2U2AF2
chr172968759529687670+3'-UTR,CDS3.383675.96194HepG2PCBP2
chr172965283829652897+3'-UTR,CDS3.568986.60490HepG2BCLAF1
chr172954613129546136+3'-UTR,CDS4.545204.98640K562YBX3
chr172955985329559900+3'-UTR,CDS,intron-Proximal4.886356.56513K562FXR2
chr172970374529703809+3'-UTR,intron-Distal3.771367.87287K562FAM120A
chr172970204929702109+3'-UTR,intron-Distal3.4181014.86383K562PUM2
chr172965453629654576+3'-UTR,CDS4.630114.70478HepG2BCLAF1
chr172970205229702107+3'-UTR,intron-Distal3.340013.80983K562TIA1
chr172968596729686033+3'-UTR,CDS,intron-Proximal3.828394.77518HepG2U2AF2
chr172970115329701197+3'-UTR,CDS,intron-Proximal4.114373.72865HepG2LIN28B
chr172955054229550658+3'-UTR,CDS,intron-Proximal4.748608.09130K562EFTUD2
chr172955364329553703+3'-UTR,CDS,intron-Proximal3.304755.09491HepG2EIF3H
chr172955685729556907+3'-UTR,CDS4.415548.80935HepG2BCLAF1
chr172957600129576061+3'-UTR,CDS,intron-Proximal3.180873.09866HepG2FXR2
chr172956001929560073+3'-UTR,CDS,intron-Proximal3.2349710.13621HepG2BCLAF1
chr172965472129654787+3'-UTR,CDS3.280806.28104K562IGF2BP2
chr172965461429654637+3'-UTR,CDS4.381363.89826HepG2BCLAF1
chr172954613129546278+3'-UTR,CDS,intron-Distal,intron-Proximal5.7812511.62275K562KHSRP
chr172955345329553511+3'-UTR,CDS3.823345.37099K562FXR2
chr172953322729533283+3'-UTR,CDS,intron-Proximal4.240346.86842HepG2U2AF2
chr172967012029670153+3'-UTR,CDS3.872827.23562HepG2BCLAF1
chr172970462729704671+3'-UTR,intron-Distal3.751677.06274K562PUM2
chr172954146829541479+3'-UTR,CDS,intron-Proximal4.372824.04372HepG2BCLAF1
chr172955789429557944+3'-UTR,CDS,intron-Proximal3.884188.19556HepG2BCLAF1
chr172970228229702338+3'-UTR,intron-Distal3.461415.75623K562FAM120A
chr172958731529587417+3'-UTR,CDS,intron-Proximal3.918093.45805K562KHSRP
chr172965470229654821+3'-UTR,CDS3.091836.67577HepG2IGF2BP1
chr172968408429684146+3'-UTR,CDS,intron-Proximal4.720535.01842HepG2PRPF8
chr172965482429654877+3'-UTR,CDS,intron-Proximal5.176803.70131HepG2PRPF8
chr172970103029701118+3'-UTR,CDS,intron-Proximal3.098875.66840K562ZNF622
chr172970122429701270+3'-UTR,intron-Distal,intron-Proximal4.554098.51568HepG2PCBP2
chr172958737629587460+3'-UTR,CDS,intron-Proximal3.305635.67580HepG2U2AF2
chr172967613429676180+3'-UTR,CDS,intron-Proximal3.759396.39464HepG2BCLAF1
chr172955731029557398+3'-UTR,CDS4.3376214.68146HepG2BCLAF1
chr172958542829585515+3'-UTR,CDS3.8280412.82131HepG2BCLAF1
chr172955209929552189+3'-UTR,CDS,intron-Proximal3.210244.76195K562U2AF1
chr172955210429552196+3'-UTR,CDS,intron-Proximal4.8547215.66890K562U2AF2
chr172954156129541602+3'-UTR,CDS4.139076.65960HepG2BCLAF1
chr172955976429559833+3'-UTR,CDS3.573704.87412HepG2EIF3H
chr172955427129554309+3'-UTR,CDS3.872824.93978HepG2BCLAF1
chr172956297329563041+3'-UTR,CDS,intron-Proximal3.417805.11155K562YBX3
chr172970408929704149+3'-UTR,intron-Distal4.3213612.37152K562FAM120A
chr172954901829549058+3'-UTR,intron-Distal,intron-Proximal3.323163.48890K562KHSRP
chr172955973329559839+3'-UTR,CDS3.8763328.70171HepG2BCLAF1
chr172970179429701872+3'-UTR,intron-Distal3.457555.84619HepG2QKI
chr172965737229657512+3'-UTR,CDS3.606633.08726K562FXR1
chr172966484429664894+3'-UTR,CDS4.8938813.19760K562LIN28B
chr172966339029663434+3'-UTR,CDS4.230926.23296HepG2BCLAF1
chr172958531229585400+3'-UTR,CDS,intron-Proximal4.168857.80703K562SF3B4
chr172965289729652940+3'-UTR,CDS3.817306.97808HepG2BCLAF1
chr172954150029541542+3'-UTR,CDS5.083557.49561HepG2BCLAF1
chr172955456529554625+3'-UTR,CDS,intron-Proximal4.5303412.43877HepG2BCLAF1
chr172966186929661924+3'-UTR,CDS4.607208.47938HepG2BCLAF1
chr172955785929557894+3'-UTR,CDS,intron-Proximal5.404328.41647HepG2BCLAF1
chr172966335029663379+3'-UTR,CDS,intron-Proximal3.026884.74766HepG2BCLAF1
chr172955457529554629+3'-UTR,CDS,intron-Proximal4.124263.59941K562UCHL5
chr172968551329685607+3'-UTR,CDS4.6540810.68105HepG2BCLAF1
chr172956006229560167+3'-UTR,CDS4.102565.92041HepG2EIF3H
chr172953328829533309+3'-UTR,CDS4.835374.34038HepG2BCLAF1
chr172954609629546114+3'-UTR,CDS3.607938.04783K562YBX3
chr172968754529687602+3'-UTR,CDS3.831783.01428K562UCHL5
chr172958012529580155+3'-UTR,intron-Distal3.502324.09242HepG2QKI
chr172957612129576141+3'-UTR,CDS,intron-Proximal3.522249.67260HepG2BCLAF1
chr172970438829704439+3'-UTR,intron-Distal3.366303.12167HepG2FUBP3
chr172955457029554625+3'-UTR,CDS,intron-Proximal4.239254.67299K562DDX24
chr172970381929703889+3'-UTR,intron-Distal3.016433.29600K562LIN28B
chr172965312629653168+3'-UTR,CDS3.395364.74886HepG2BCLAF1
chr172966483529664844+3'-UTR,5'-UTR,CDS,intron-Proximal4.045447.52193K562LIN28B
chr172955692129556958+3'-UTR,CDS3.165305.40132HepG2BCLAF1
chr172966457129664582+3'-UTR,CDS3.359823.57857HepG2BCLAF1
chr172955606829556120+3'-UTR,CDS5.0380610.19430HepG2BCLAF1
chr172968549829685640+3'-UTR,CDS3.482355.10442K562YBX3
chr172955604229556068+3'-UTR,CDS,intron-Proximal4.159558.94445HepG2BCLAF1
chr172970223729702305+3'-UTR,intron-Distal3.015298.19971K562PUM2
chr172965319929653252+3'-UTR,CDS3.027996.06438HepG2BCLAF1
chr172955727729557310+3'-UTR,CDS,intron-Proximal3.344365.00751HepG2BCLAF1
chr172970103729701136+3'-UTR,CDS3.833555.85178HepG2IGF2BP1
chr172954881529548900+3'-UTR,CDS,intron-Proximal3.888534.77518HepG2U2AF2
chr172970114729701197+3'-UTR,CDS,intron-Proximal4.510866.32937K562LIN28B
chr172968599829686026+3'-UTR,CDS4.741305.68196HepG2BCLAF1
chr172957995429580010+3'-UTR,CDS,intron-Distal,intron-Proximal4.124077.23562HepG2BCLAF1
chr172953333429533389+3'-UTR,CDS3.479889.01874HepG2BCLAF1
chr172955909029559187+3'-UTR,CDS,intron-Proximal3.5744814.34206HepG2BCLAF1
chr172970444129704518+3'-UTR,intron-Distal4.8628727.07824K562PUM2
chr172970451829704558+3'-UTR,intron-Distal4.731357.56405K562PUM2
chr172955695829556992+3'-UTR,CDS3.599417.42278HepG2BCLAF1
chr172966483329664897+3'-UTR,5'-UTR,CDS,intron-Proximal4.9399221.06851HepG2LIN28B
chr172955345129553542+3'-UTR,CDS,intron-Proximal3.115776.70384HepG2PPIG
chr172958015529580258+3'-UTR,intron-Distal5.4288211.15144HepG2QKI
chr172970418929704248+3'-UTR,intron-Distal5.1027613.21799K562PUM2
chr172966485629664887+3'-UTR,CDS3.321415.15500HepG2BCLAF1
chr172955908929559174+3'-UTR,CDS,intron-Proximal3.738604.28265HepG2FXR2
chr172958534929585415+3'-UTR,CDS,intron-Proximal4.1309210.33445HepG2U2AF2
chr172954886729548887+3'-UTR,CDS,intron-Proximal3.611724.74241K562YBX3
chr172970204729702123+3'-UTR,intron-Distal4.2460615.31058K562FAM120A
chr172958877329588824+3'-UTR,CDS4.531834.21675K562ZNF622
chr172965299929653132+3'-UTR,CDS4.310358.27565K562FXR2
chr172965281529652890+3'-UTR,CDS,intron-Proximal4.385446.02363HepG2U2AF2
chr172955604229556071+3'-UTR,CDS,intron-Proximal4.267143.87995K562UCHL5
chr172955210129552149+3'-UTR,CDS,intron-Proximal5.4856417.59328K562SF3B4
chr172953323529533314+3'-UTR,CDS,intron-Proximal3.325643.26275K562BUD13
chr172950847229508507+5'-UTR,CDS3.7338212.82131HepG2BCLAF1
chr172942222329422286+5'-UTR,CDS3.847534.59716HepG2HNRNPK
chr172942222329422296+5'-UTR,CDS4.1765515.24247HepG2PCBP2
chr172942213629422220+5'-UTR3.802799.80797K562ILF3
chr172952745829527519+5'-UTR,CDS4.009339.50935HepG2BCLAF1
chr172950844529508472+5'-UTR,CDS3.488136.50801HepG2BCLAF1
chr172942210429422223+5'-UTR6.3565557.73075HepG2PCBP2
chr172950876029508804+5'-UTR,CDS,intron-Proximal5.4203313.34895HepG2BCLAF1
chr172942212329422194+5'-UTR6.7128836.80098HepG2DDX59
chr172950872729508760+5'-UTR,CDS,intron-Proximal3.9074010.35753HepG2BCLAF1
chr172942208229422211+5'-UTR4.9406725.29933HepG2HNRNPK
chr172942219429422292+5'-UTR,CDS4.9105034.77142HepG2DDX59
chr172952814029528176+5'-UTR,CDS3.381366.20035HepG2BCLAF1
chr172950954329509594+5'-UTR,CDS3.687848.66838HepG2BCLAF1
chr172942212529422307+5'-UTR,CDS5.6236013.87589K562HNRNPK
chr172950961729509682+5'-UTR,CDS3.419377.13168HepG2BCLAF1
chr172942222029422318+5'-UTR,CDS3.989708.81166K562ILF3
chr172942202229422069+5'-UTR4.036323.82414HepG2HNRNPK
chr172950952529509543+5'-UTR,CDS,intron-Proximal4.3224411.11870HepG2BCLAF1
chr172942219229422290+5'-UTR,CDS3.553428.73667K562PCBP1
chr172942212129422192+5'-UTR5.890559.70511K562PCBP1
chr172959224529592253+CDS,intron-Proximal3.413635.15500HepG2BCLAF1
chr172948605629486100+CDS4.2363415.80902HepG2BCLAF1
chr172949020229490225+CDS,intron-Proximal3.6301111.76397HepG2BCLAF1
chr172942232729422383+CDS3.502154.52901HepG2DDX59
chr172949690729496965+CDS,intron-Distal,intron-Proximal4.9022710.13662HepG2BCLAF1
chr172958884029588875+CDS5.385597.95223HepG2BCLAF1
chr172949696529497015+CDS,intron-Distal4.0978412.07231HepG2BCLAF1
chr172959235429592483+CDS,intron-Distal,intron-Proximal4.393475.66560K562TIA1
chr172948610029486112+CDS,intron-Proximal3.9305614.30125HepG2BCLAF1
chr172963236829632424+intron-Distal5.118097.63393K562HNRNPM
chr172962266329622711+intron-Distal4.719036.08869K562EXOSC5
chr172954177829541914+intron-Distal7.4575231.18574K562QKI
chr172948784229487942+intron-Distal4.844825.60990HepG2KHSRP
chr172944719929447241+intron-Distal3.807475.20960K562EXOSC5
chr172942832329428396+intron-Distal3.953443.39827HepG2MATR3
chr172952522529525296+intron-Distal3.611674.10380HepG2MATR3
chr172953795129538013+intron-Distal4.587285.54528HepG2QKI
chr172955065829550720+intron-Distal,intron-Proximal4.341385.84589K562EFTUD2
chr172962716629627229+intron-Distal3.751803.45805K562KHSRP
chr172959954529599588+intron-Distal4.713345.37406HepG2HNRNPM
chr172954616929546250+intron-Distal,intron-Proximal3.280453.29213HepG2KHSRP
chr172961555729615609+intron-Distal3.375864.23034HepG2HNRNPC
chr172963221729632259+intron-Distal4.410709.39985K562EXOSC5
chr172954693429547008+intron-Distal3.980928.67954K562KHSRP
chr172959943929599494+intron-Distal3.424495.72132HepG2HNRNPM
chr172959881029598880+intron-Distal4.5950411.95660HepG2PCBP2
chr172966530829665371+intron-Distal3.779033.42844K562KHSRP
chr172946414729464242+intron-Distal3.643825.79523HepG2SUGP2
chr172959934129599391+intron-Distal3.995653.27946HepG2HNRNPM
chr172942854829428617+intron-Distal4.267294.47026K562MATR3
chr172955028829550321+intron-Distal3.820996.57673K562KHSRP
chr172963238029632438+intron-Distal5.6679812.32537K562EXOSC5
chr172962233829622397+intron-Distal4.290424.78128K562HNRNPM
chr172954700829547070+intron-Distal3.770076.18396K562KHSRP
chr172958255829582581+intron-Distal5.138648.32833K562LIN28B
chr172949622029496301+intron-Distal3.391654.03817HepG2KHSRP
chr172961540929615467+intron-Distal5.7349019.89577HepG2QKI
chr172951601229516083+intron-Distal3.823163.25538K562KHSRP
chr172945864629458716+intron-Distal4.157827.69621K562KHSRP
chr172962360029623653+intron-Distal3.582343.27944K562PTBP1
chr172945125729451317+intron-Distal3.674658.38488HepG2HNRNPC
chr172960394629604012+intron-Distal3.613523.94088HepG2QKI
chr172959879429598875+intron-Distal3.073324.25730HepG2HNRNPK
chr172959607129596308+intron-Distal3.185783.56409K562MATR3
chr172963243929632485+intron-Distal4.481524.51377K562HNRNPM
chr172948388129483943+intron-Distal4.186947.82201HepG2QKI
chr172955066829550717+intron-Distal,intron-Proximal4.036936.08301HepG2EFTUD2
chr172955026929550370+intron-Distal,intron-Proximal3.942704.54121HepG2KHSRP
chr172945214529452224+intron-Distal4.301914.72162K562KHSRP
chr172961835729618403+intron-Distal4.359094.12401HepG2U2AF2
chr172945322229453410+intron-Distal4.1178113.37458K562KHSRP
chr172942240929422488+intron-Distal,intron-Proximal4.914667.58609HepG2PRPF4
chr172955521629555291+intron-Distal4.375224.79379K562KHSRP
chr172960450229604553+intron-Distal3.370803.35585HepG2QKI
chr172963212029632143+intron-Distal3.931026.11008K562EXOSC5
chr172951890629518996+intron-Distal3.157903.80334HepG2U2AF2
chr172954714829547272+intron-Distal3.6039010.59064K562KHSRP
chr172962243429622510+intron-Distal3.301163.34940K562HNRNPM
chr172962264629622692+intron-Distal4.189933.07980HepG2HNRNPM
chr172958177329581883+intron-Distal3.424715.55825HepG2U2AF2
chr172953794129538017+intron-Distal5.066845.61339K562QKI
chr172942834829428415+intron-Distal4.457255.32928K562MATR3
chr172944714829447196+intron-Distal3.500984.02241K562EXOSC5
chr172954183029541902+intron-Distal6.2044713.99567HepG2QKI
chr172959950229599598+intron-Distal4.288014.51309K562HNRNPM
chr172955656429556644+intron-Distal,intron-Proximal4.010923.31283K562PRPF8
chr172959943729599490+intron-Distal4.061753.78162K562HNRNPM
chr172965072229650823+intron-Distal4.657885.57752HepG2PTBP1
chr172945238929452448+intron-Distal4.264033.66668K562KHSRP
chr172962242829622494+intron-Distal5.151348.59719HepG2HNRNPM
chr172961825429618335+intron-Distal4.161183.60944K562TARDBP
chr172952788429528001+intron-Distal,intron-Proximal4.692116.94732K562KHSRP
chr172958258129582613+intron-Distal4.154857.48534K562LIN28B
chr172963221229632363+intron-Distal5.2121317.37274HepG2HNRNPM
chr172949565129495699+intron-Distal3.447863.16095HepG2U2AF2
chr172962707329627166+intron-Distal3.068465.57010K562KHSRP
chr172960596429606023+intron-Distal4.329113.95871HepG2ILF3
chr172942856329428624+intron-Distal3.717075.78025HepG2RBFOX2
chr172948790829487968+intron-Distal3.588787.64049K562KHSRP
chr172962231729622387+intron-Distal4.347938.80887K562EXOSC5
chr172942859729428640+intron-Distal4.265743.27829HepG2MATR3
chr172944596529446025+intron-Distal3.974229.08614K562EXOSC5
chr172961807529618141+intron-Distal3.827803.49011K562KHSRP
chr172957655329576626+intron-Distal3.078263.06355HepG2KHSRP
chr172954876129548790+intron-Distal,intron-Proximal4.202914.31512K562KHSRP
chr172962318129623217+intron-Distal3.431024.31658K562EXOSC5
chr172962727329627339+intron-Distal4.993825.95026HepG2U2AF2
chr172945871629458828+intron-Distal3.659079.89511K562KHSRP
chr172960932729609394+intron-Distal4.453674.48296K562LIN28B
chr172954693329546989+intron-Distal3.832853.95921HepG2U2AF2
chr172963221429632305+intron-Distal5.4408417.52831K562HNRNPM
chr172948385629483964+intron-Distal5.474634.38664K562QKI
chr172954799629548070+intron-Distal3.601556.18396K562KHSRP
chr172947423029474303+intron-Distal4.399035.06031HepG2CSTF2
chr172954190729541950+intron-Distal4.103143.50357HepG2QKI
chr172963220929632359+intron-Distal4.872026.50992HepG2BCCIP
chr172952002529520071+intron-Distal4.263996.86842HepG2U2AF2
chr172961547029615514+intron-Distal4.875307.27974HepG2QKI
chr172953352329533603+intron-Distal4.101554.10688K562KHSRP
chr172958168429581745+intron-Distal4.044283.42844K562KHSRP
chr172948004529480058+intron-Distal4.028263.90241K562MATR3
chr172944957729449634+intron-Distal3.125203.51696K562KHSRP
chr172946419829464260+intron-Distal4.301124.31871HepG2HNRNPM
chr172961532929615409+intron-Distal4.4518410.60587HepG2QKI
chr172965082329650943+intron-Distal4.072923.41738HepG2PTBP1
chr172951608329516247+intron-Distal5.1627810.49617K562KHSRP
chr172963203829632078+intron-Distal5.6962711.99379K562EXOSC5
chr172948677129486880+intron-Distal4.512784.31512K562KHSRP
chr172954804129548087+intron-Distal4.308744.00239HepG2KHSRP
chr172959895329599019+intron-Distal4.205334.70117K562HNRNPL
chr172963225929632348+intron-Distal6.8877930.10437K562EXOSC5
chr172961535029615468+intron-Distal6.9935935.63936K562QKI
chr172968803929688097+intron-Distal4.191583.50357HepG2QKI
chr172963170529631759+intron-Distal6.3526019.67027K562EXOSC5
chr172942251329422607+intron-Distal3.453136.66494HepG2NKRF
chr172962725829627360+intron-Distal4.593276.73684K562KHSRP
chr172962359229623685+intron-Distal3.507304.48652HepG2PTBP1
chr172962243129622489+intron-Distal3.864738.78073K562EXOSC5
chr172954692929547065+intron-Distal4.064334.54121HepG2KHSRP
chr172954826629548330+intron-Distal4.8381912.02715HepG2KHSRP
chr172958160129581742+intron-Distal4.622367.82056K562QKI
chr172963236329632437+intron-Distal5.142047.15660HepG2HNRNPM
chr172959959829599699+intron-Distal3.562584.32964K562HNRNPM
chr172963230529632364+intron-Distal5.9947713.42189K562HNRNPM
chr172954671729546781+intron-Distal4.691585.31925HepG2QKI
chr172955035229550447+intron-Distal,intron-Proximal4.533067.69621K562KHSRP
chr172948279729482869+intron-Distal3.874363.45805K562KHSRP
chr172963254029632588+intron-Distal5.6182112.32537K562EXOSC5
chr172942252229422602+intron-Distal4.386685.11005HepG2PRPF4
chr172954721429547274+intron-Distal3.764243.78824HepG2KHSRP
chr172952559729525686+intron-Distal4.683845.76685K562EXOSC5
chr172944650529446554+intron-Distal4.957257.06134K562EXOSC5
chr172961818929618254+intron-Distal4.131304.54401K562KHSRP
chr172942799229428058+intron-Distal3.685564.32448K562PTBP1
chr172959958829599672+intron-Distal5.151348.87179HepG2HNRNPM
chr172942797429428079+intron-Distal5.020718.08294K562MATR3
chr172958157329581719+intron-Distal5.5729522.72580HepG2QKI
chr172945857529458645+intron-Distal3.425063.61733HepG2XPO5
chr172963215029632182+intron-Distal4.419644.64592HepG2HNRNPM
chr172963243829632513+intron-Distal5.2688017.76358K562EXOSC5
chr172962220929622274+intron-Distal4.251136.40934HepG2HNRNPM
chr172959940429599502+intron-Distal3.762504.61282K562EXOSC5
chr172953771729537822+intron-Distal3.778043.45805K562KHSRP
chr172954713429547214+intron-Distal4.112446.36119HepG2KHSRP
chr172952767429527790+intron-Distal,intron-Proximal3.432634.93120K562KHSRP
chr172963219329632282+intron-Distal5.150385.43487HepG2EXOSC5
chr172948005829480089+intron-Distal4.185784.24113K562MATR3
chr172958624629586303+intron-Distal,intron-Proximal3.637114.36528HepG2U2AF2
chr172954686529546919+intron-Distal3.631914.93120K562KHSRP
chr172962272929622837+intron-Distal4.9310213.84610K562EXOSC5
chr172962284029622884+intron-Distal4.962097.78465HepG2HNRNPM
chr172962311429623168+intron-Distal4.607845.12432K562EXOSC5
chr172963214329632188+intron-Distal5.9332415.65314K562EXOSC5
chr172955144429551508+intron-Distal3.119493.29213HepG2KHSRP
chr172965063529650718+intron-Distal3.135804.50771K562PTBP1
chr172963566929635780+intron-Distal4.375784.40847HepG2PTBP1
chr172948774629487865+intron-Distal3.718758.89894K562KHSRP
chr172948394329483985+intron-Distal4.402563.80778HepG2QKI
chr172955032129550352+intron-Distal4.323286.83037K562KHSRP
chr172962218929622283+intron-Distal5.8609314.98606K562EXOSC5
chr172962281729622903+intron-Distal4.739365.31171K562HNRNPM
chr172955037029550445+intron-Proximal4.511624.53660HepG2KHSRP
chr172942242129422477+intron-Proximal3.273143.69530HepG2CSTF2T
chr172955206229552101+intron-Proximal5.137954.90235K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NF1 is not available on ENCORE database.

  • 85 RBPs can affect the levels of NF1.  








The Knockdown/knockout RNA-Seq assay for NF1 is not available on ENCORE database.





85 RBPs can affect the gene expression of NF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NF1ENSG00000196712.123901.774602907.139700.424403.305102.73070HepG2AKAP1
NF1ENSG00000196712.123024.899402658.562400.186102.094401.41420HepG2AKAP8L
NF1ENSG00000196712.121126.260001993.60120-0.823807.976506.33710HepG2BCCIP
NF1ENSG00000196712.121916.580003184.80970-0.732705.591104.50070HepG2CNOT7
NF1ENSG00000196712.121692.561802225.39490-0.394903.836702.63320HepG2YBX3
NF1ENSG00000196712.12798.091601231.70760-0.626005.333703.90990HepG2CSTF2
NF1ENSG00000196712.121863.766102439.40510-0.388306.072705.19030HepG2CELF1
NF1ENSG00000196712.121974.932102622.90330-0.409409.624508.37310HepG2DAZAP1
NF1ENSG00000196712.121290.885102167.60300-0.7477012.3710011.05750HepG2DDX21
NF1ENSG00000196712.121379.530701960.02430-0.506703.456102.60370HepG2DDX55
NF1ENSG00000196712.121876.490002531.63980-0.432008.247807.19900HepG2DKC1
NF1ENSG00000196712.121807.774002165.89960-0.260804.105203.34180HepG2DNAJC2
NF1ENSG00000196712.121408.797501797.57790-0.351602.646101.55880HepG2EFTUD2
NF1ENSG00000196712.122022.382902525.24150-0.320402.528001.48420HepG2ESF1
NF1ENSG00000196712.122072.171502585.74040-0.319403.150502.26170HepG2EWSR1
NF1ENSG00000196712.122292.030601436.011400.6745010.515809.03170HepG2FUBP3
NF1ENSG00000196712.122994.095502378.682900.331902.324201.71230HepG2G3BP1
NF1ENSG00000196712.121190.121301558.50500-0.389103.209202.23590HepG2GEMIN5
NF1ENSG00000196712.121778.075702641.14750-0.570805.643604.75110HepG2GPKOW
NF1ENSG00000196712.121379.561102206.05320-0.6773010.722809.57620HepG2HNRNPA1
NF1ENSG00000196712.121697.400602453.85180-0.531706.793405.74430HepG2HNRNPC
NF1ENSG00000196712.121996.482402389.24720-0.259104.165603.35160HepG2HNRNPL
NF1ENSG00000196712.121937.257702437.62650-0.331505.471504.64090HepG2HNRNPU
NF1ENSG00000196712.121614.179202489.95040-0.6253021.4088019.58780HepG2ILF2
NF1ENSG00000196712.123045.130203940.72880-0.372002.409101.63790HepG2LARP4
NF1ENSG00000196712.121681.840602565.07720-0.609006.698105.69070HepG2MAGOH
NF1ENSG00000196712.122362.792903451.15270-0.546603.996202.28260HepG2NKRF
NF1ENSG00000196712.121985.648502412.80100-0.281103.833602.85380HepG2PARN
NF1ENSG00000196712.121188.507001447.51240-0.284402.457501.30330HepG2PKM
NF1ENSG00000196712.121643.210802174.16360-0.403905.970804.92080HepG2PPIL4
NF1ENSG00000196712.121352.272802482.77210-0.8766011.9572010.83800HepG2PUF60
NF1ENSG00000196712.122203.885102695.26870-0.290404.848604.07500HepG2PUS1
NF1ENSG00000196712.123639.895002502.526500.5404010.758809.64410HepG2QKI
NF1ENSG00000196712.122943.587902271.248300.374004.355003.52510HepG2RBM25
NF1ENSG00000196712.121985.594902549.32130-0.360502.571201.61700HepG2RBM27
NF1ENSG00000196712.121373.895501703.15230-0.309902.610902.01280HepG2RPS19
NF1ENSG00000196712.121823.545302351.25740-0.366702.821102.01330HepG2RPS2
NF1ENSG00000196712.121934.138003198.98160-0.725906.864505.61400HepG2RPS3A
NF1ENSG00000196712.121762.774502170.79920-0.300404.785903.97820HepG2SAFB2
NF1ENSG00000196712.122889.982802405.733200.264503.847703.16850HepG2SF3B4
NF1ENSG00000196712.122997.087902380.628500.332107.146906.10310HepG2SLBP
NF1ENSG00000196712.121816.353202531.49340-0.4789012.1895010.98820HepG2SMN1
NF1ENSG00000196712.122906.876602511.105200.211002.833702.35640HepG2SRSF1
NF1ENSG00000196712.122587.485202042.952700.340806.197005.42950HepG2SRSF9
NF1ENSG00000196712.122076.239003096.73130-0.5768016.2929015.26250HepG2SSB
NF1ENSG00000196712.121928.561002783.08760-0.529204.058702.70620HepG2STIP1
NF1ENSG00000196712.123252.694102257.191800.5270010.912109.91560HepG2TAF15
NF1ENSG00000196712.122531.015202073.932300.287202.921702.06440HepG2TIA1
NF1ENSG00000196712.121094.408902368.51410-1.1138032.8113031.43470HepG2TIAL1
NF1ENSG00000196712.121784.672602389.78940-0.421208.058007.17440HepG2TRIM56
NF1ENSG00000196712.12792.976201152.81860-0.539804.171903.23920HepG2UCHL5
NF1ENSG00000196712.12979.224901787.23550-0.868006.707005.09890HepG2UPF2
NF1ENSG00000196712.122305.973002933.50130-0.347205.271304.48910HepG2UTP3
NF1ENSG00000196712.121773.425802865.38860-0.692205.953204.34990HepG2XPO5
NF1ENSG00000196712.12805.702801920.86670-1.2534015.2098013.53860HepG2XRN2
NF1ENSG00000196712.122577.650102266.945500.185202.130601.52970HepG2ZC3H8
NF1ENSG00000196712.123245.781202556.352800.344403.973603.03410K562CPSF6
NF1ENSG00000196712.121453.614801740.79930-0.260102.522201.51830K562CSTF2
NF1ENSG00000196712.123690.771104777.86350-0.372406.222504.82530K562DKC1
NF1ENSG00000196712.122196.269202771.65620-0.335703.067902.20500K562EIF4A3
NF1ENSG00000196712.121930.379203144.13380-0.7038011.416009.57090K562FIP1L1
NF1ENSG00000196712.123487.245502601.234800.422804.398403.31950K562FMR1
NF1ENSG00000196712.122754.323702204.870800.320902.329701.49520K562FTO
NF1ENSG00000196712.122481.559802882.41620-0.216002.176401.62820K562FXR1
NF1ENSG00000196712.123824.496702864.628200.416802.806102.09190K562G3BP2
NF1ENSG00000196712.122371.857503665.11250-0.6278010.834009.30980K562GRSF1
NF1ENSG00000196712.124153.614002687.300700.628102.793001.56630K562HNRNPA2B1
NF1ENSG00000196712.121746.685802586.13350-0.566205.695804.29520K562HNRNPM
NF1ENSG00000196712.122643.721004262.72390-0.6892011.119909.55390K562HSPD1
NF1ENSG00000196712.123100.411402084.193800.572903.524002.45580K562KRR1
NF1ENSG00000196712.122495.484703299.07170-0.402704.757203.64850K562MAGOH
NF1ENSG00000196712.122637.978203292.43690-0.319703.344302.31790K562MATR3
NF1ENSG00000196712.121728.377802235.59660-0.371202.890501.56130K562NONO
NF1ENSG00000196712.122011.051103569.26940-0.8277014.7871012.39570K562PPIG
NF1ENSG00000196712.121417.598701959.74340-0.467205.000303.73590K562PSIP1
NF1ENSG00000196712.122630.003103205.22630-0.285402.850002.17690K562PTBP1
NF1ENSG00000196712.124388.447005658.82710-0.366803.265702.38050K562PUF60
NF1ENSG00000196712.124573.077005897.52340-0.366902.895401.91430K562PUM2
NF1ENSG00000196712.122318.112303073.63760-0.407004.280403.20710K562RBM22
NF1ENSG00000196712.121615.849202248.79050-0.476903.866402.89910K562RPS19
NF1ENSG00000196712.122034.125102961.88170-0.542104.511903.19570K562RPS3
NF1ENSG00000196712.123773.981103283.250000.200902.271401.52650K562SF3A3
NF1ENSG00000196712.122950.256702321.410400.345702.452701.54050K562SF3B1
NF1ENSG00000196712.123802.898702468.481800.623402.520101.36900K562SNRNP200
NF1ENSG00000196712.122242.535302859.76590-0.350802.717401.68070K562SRSF4
NF1ENSG00000196712.122394.678403180.15060-0.409303.968303.11340K562TARDBP
NF1ENSG00000196712.122422.882403067.59010-0.340403.883002.89090K562TIA1
NF1ENSG00000196712.124505.403302777.359700.697806.036604.27990K562U2AF1
NF1ENSG00000196712.123656.409202868.210400.350204.541703.51870K562U2AF2
NF1ENSG00000196712.123022.554703528.11290-0.223103.355002.56850K562UPF1
NF1ENSG00000196712.124839.801502904.751800.736403.466801.62680K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NF1 is not available on ENCORE database.





20 RBPs can affect the splicing of NF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.143000.002090.03784excludedK562SRSF1
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.340000.000300.03135excludedHepG2QKI
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.096000.000000.00007excludedHepG2U2AF2
SENF1ENSG00000196712.12chr17+2964132229641411295922152959235729652837296532700.070000.009700.07928includedK562AQR
SENF1ENSG00000196712.12chr17+2957697229577143295759772957613729579955295800180.390000.000030.00066includedK562AQR
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.259000.001650.01862excludedK562AQR
SENF1ENSG00000196712.12chr17+2968930529689382296875042968772129701030297011470.058000.001180.09033includedHepG2SRSF7
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.135000.000000.00000excludedK562PUS1
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.259000.003180.04382excludedK562PUS1
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.455000.000000.00067excludedK562HNRNPM
SENF1ENSG00000196712.12chr17+2957697229577143295760012957613729579955295800180.230000.000640.01786includedHepG2SRSF1
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.291000.000000.00001excludedHepG2SRSF1
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.282000.003750.08477excludedHepG2SF3A3
SENF1ENSG00000196712.12chr17+295542352955430929553452295537022955454029554624-0.161000.000770.01596excludedK562U2AF2
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.264000.001550.02859excludedK562U2AF2
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.064000.000470.01520excludedK562RBM15
SENF1ENSG00000196712.12chr17+2958470429584803295799552958001829585361295855200.087000.002470.05522includedK562AGGF1
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.083000.000030.00163excludedK562AGGF1
SENF1ENSG00000196712.12chr17+2957995529580018295760012957613729585361295855200.333000.000050.02035includedHepG2EIF3D
SENF1ENSG00000196712.12chr17+296834772968360029679274296794322968397729684108-0.053000.000530.02481excludedK562SF3B1
SENF1ENSG00000196712.12chr17+2964132229641411295922462959235729652837296532700.083000.000810.09425includedK562ZC3H8
SENF1ENSG00000196712.12chr17+295799552958001829576001295761372958536129585520-0.253000.000270.04516excludedK562ZC3H8
A3SSNF1ENSG00000196712.12chr17+2966481929664898296648362966489829664385296646000.072000.001310.00885longerK562AQR
A3SSNF1ENSG00000196712.12chr17+2966501929665157296650422966515729664819296648980.056000.006630.03701longerK562AQR
A3SSNF1ENSG00000196712.12chr17+2958871429588812295887282958881229587386295875330.081000.004500.02636longerK562AQR
A3SSNF1ENSG00000196712.12chr17+2955970129559899295597172955989929559090295592070.105000.002760.01715longerK562AQR
RINF1ENSG00000196712.12chr17+2955604229556992295560422955648329556852295569920.059000.007360.07097includedK562AGGF1
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.130000.000660.014671includedK562PUS1
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.170000.000030.002031includedK562AGGF1
MXENF1ENSG00000196712.12chr17+29679274296794242968347729683600296772002967733629683977296841080.152000.000160.009401includedK562AGGF1
MXENF1ENSG00000196712.12chr17+29667522296676632967002629670153296648342966489829676137296762690.057000.001930.016141includedK562AQR
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.126000.000840.047891includedK562UTP18
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.100000.002230.027031includedHepG2SFPQ
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.127000.000060.000701includedHepG2U2AF2
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.103000.002200.053441includedK562SBDS
MXENF1ENSG00000196712.12chr17+2967927429679432296834772968360029677200296773362968397729684108-0.179000.003140.080482includedK562TAF15
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.099000.000730.022651includedK562FXR2
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.132000.000690.031051includedK562AKAP8L
MXENF1ENSG00000196712.12chr17+29679274296794322968347729683600296772002967733629683977296841080.139000.004400.058641includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NF1 is not avaliable on ENCORE database.